BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0104.p (187 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001353280.1| transcriptional regulator [Janthinobacterium... 264 5e-69 ref|YP_003774795.1| transcription regulator protein [Herbaspiril... 259 2e-67 ref|ZP_02958646.1| hypothetical protein PROSTU_00393 [Providenci... 229 1e-58 ref|ZP_06127726.1| putative transcriptional regulator [Providenc... 226 1e-57 ref|ZP_05974373.1| putative transcriptional regulator [Providenc... 224 4e-57 >ref|YP_001353280.1| transcriptional regulator [Janthinobacterium sp. Marseille] gb|ABR88594.1| transcriptional regulator [Janthinobacterium sp. Marseille] Length = 216 Score = 264 bits (674), Expect = 5e-69, Method: Compositional matrix adjust. Identities = 131/203 (64%), Positives = 155/203 (76%), Gaps = 20/203 (9%) Query: 2 STAERILLRLKTRGPASTATLAQELGMTAEAAR-------------------XGAGRPRQ 42 +T ER+LL +KT+GP STA LAQEL MTAEAAR G GRPRQ Sbjct: 13 ATHERMLLLIKTKGPISTAELAQELNMTAEAARQQVQKLMTAGLIAGQQEASTGVGRPRQ 72 Query: 43 NWELSPAGHARFPDTHAYLTIQLIGSIRQLFGEEGLDRLISQREGEMRKDYLKACRGVAG 102 NW L+ AG+ARFPDTHA LT+QL+GS+RQLFGEEGL+R+ISQRE E R YL+AC Sbjct: 73 NWVLTEAGYARFPDTHAQLTVQLLGSVRQLFGEEGLERMISQREEETRVVYLQACSS-KK 131 Query: 103 IPKKLDKLAALRAAEGYMARVEKDGKDWLLIEDHCPICAAATTCQGFCRSELQLFREVIG 162 + ++L LA +R+AEGYMARVE+DGKDWLLIEDHCPIC AA TCQGFCRSEL+LF+EV+G Sbjct: 132 LAERLQSLAEVRSAEGYMARVERDGKDWLLIEDHCPICFAARTCQGFCRSELRLFQEVVG 191 Query: 163 DAASVTREEHLLAGARRCVYRVS 185 D A+V RE+HLLA A RCVYR+S Sbjct: 192 DEATVIREQHLLADAGRCVYRIS 214 >ref|YP_003774795.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ62887.1| transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 223 Score = 259 bits (661), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 135/203 (66%), Positives = 157/203 (77%), Gaps = 19/203 (9%) Query: 2 STAERILLRLKTRGPASTATLAQELGMTAEAARX------GAG-------------RPRQ 42 STA+RILLRLKTRGPAS + LA EL M+AEAAR G G RPRQ Sbjct: 16 STADRILLRLKTRGPASASELAGELEMSAEAARQQIQKLAGDGLIASRQAAAARAGRPRQ 75 Query: 43 NWELSPAGHARFPDTHAYLTIQLIGSIRQLFGEEGLDRLISQREGEMRKDYLKACRGVAG 102 +WEL+ AGHARFPDTHA LT+QLIGSIRQLFG+ GLD+LI QRE +MR +Y + C + Sbjct: 76 DWELTAAGHARFPDTHAQLTVQLIGSIRQLFGQAGLDKLIEQREVQMRAEYQQHCGRLNS 135 Query: 103 IPKKLDKLAALRAAEGYMARVEKDGKDWLLIEDHCPICAAATTCQGFCRSELQLFREVIG 162 +P+KL+KLA LR+AEGYMARVEK GK WLLIEDHCPICAAA +CQGFCRSELQLF EV+G Sbjct: 136 LPRKLEKLAELRSAEGYMARVEKHGKQWLLIEDHCPICAAAQSCQGFCRSELQLFGEVLG 195 Query: 163 DAASVTREEHLLAGARRCVYRVS 185 + A +TREEHLLA RRCVYR++ Sbjct: 196 EQAEITREEHLLAEGRRCVYRIT 218 >ref|ZP_02958646.1| hypothetical protein PROSTU_00393 [Providencia stuartii ATCC 25827] gb|EDU61504.1| hypothetical protein PROSTU_00393 [Providencia stuartii ATCC 25827] Length = 220 Score = 229 bits (585), Expect = 1e-58, Method: Compositional matrix adjust. Identities = 109/201 (54%), Positives = 138/201 (68%), Gaps = 21/201 (10%) Query: 4 AERILLRLKTRGPASTATLAQELGMTAEAAR--------------------XGAGRPRQN 43 +++L +KT+GP STA +A++L MT EAAR GAGRPRQN Sbjct: 17 VDKVLFCIKTKGPISTAVIAKDLAMTGEAARQHIQKLTSLGLVEGVQCTSQTGAGRPRQN 76 Query: 44 WELSPAGHARFPDTHAYLTIQLIGSIRQLFGEEGLDRLISQREGEMRKDYLKACRGVAGI 103 W L+ GH RFPDTHA LT+QLI S++ +FG EGL++LISQREGE++ YL C G Sbjct: 77 WVLTALGHQRFPDTHAQLTLQLIDSVKNIFGNEGLEKLISQREGEVKAKYLSRC-GSLPF 135 Query: 104 PKKLDKLAALRAAEGYMARVEKDGKDWLLIEDHCPICAAATTCQGFCRSELQLFREVIGD 163 ++L LA +R EGYMA +E+DG WL IE+HCPICAAAT CQ FCRSELQLFR+++G Sbjct: 136 VERLQALADVRNEEGYMAHIEQDGNSWLFIENHCPICAAATVCQNFCRSELQLFRDIMGS 195 Query: 164 AASVTREEHLLAGARRCVYRV 184 +V RE++LL GA RCVYRV Sbjct: 196 DVTVEREQYLLNGAGRCVYRV 216 >ref|ZP_06127726.1| putative transcriptional regulator [Providencia rettgeri DSM 1131] gb|EFE51381.1| putative transcriptional regulator [Providencia rettgeri DSM 1131] Length = 220 Score = 226 bits (576), Expect = 1e-57, Method: Compositional matrix adjust. Identities = 106/201 (52%), Positives = 139/201 (69%), Gaps = 21/201 (10%) Query: 4 AERILLRLKTRGPASTATLAQELGMTAEAAR--------------------XGAGRPRQN 43 +++L +KT+GP STA +A +L MT EAAR GAGRPRQN Sbjct: 17 VDKVLFCIKTKGPISTAVIANDLNMTGEAARQHIQKLTSLGLVEGAQCLSQTGAGRPRQN 76 Query: 44 WELSPAGHARFPDTHAYLTIQLIGSIRQLFGEEGLDRLISQREGEMRKDYLKACRGVAGI 103 W L+ GH RFPDTHA L +QLI S++ +FG+EGL++LISQRE E R+ Y C+ + + Sbjct: 77 WVLTELGHQRFPDTHAQLALQLINSVQTIFGDEGLEKLISQREMESREKYFARCKNLP-L 135 Query: 104 PKKLDKLAALRAAEGYMARVEKDGKDWLLIEDHCPICAAATTCQGFCRSELQLFREVIGD 163 ++L++LA +R+ EGYMA+VE+D WL IE+HCPICAAAT CQ FCRSEL LF E++GD Sbjct: 136 AERLEELAEVRSEEGYMAKVEQDDNSWLFIENHCPICAAATACQNFCRSELALFSEIVGD 195 Query: 164 AASVTREEHLLAGARRCVYRV 184 S+ RE++LL GA RCVYRV Sbjct: 196 DGSIEREQYLLNGAGRCVYRV 216 >ref|ZP_05974373.1| putative transcriptional regulator [Providencia rustigianii DSM 4541] gb|EFB70664.1| putative transcriptional regulator [Providencia rustigianii DSM 4541] Length = 223 Score = 224 bits (572), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 107/204 (52%), Positives = 141/204 (69%), Gaps = 21/204 (10%) Query: 4 AERILLRLKTRGPASTATLAQELGMTAEAAR--------------------XGAGRPRQN 43 +++L +KT+GP ST+ +A +L +T EAAR GAGRPRQN Sbjct: 17 VDKVLFCIKTKGPISTSVIANDLNLTGEAARQHVQKLTSLGLVEGVQCAAQSGAGRPRQN 76 Query: 44 WELSPAGHARFPDTHAYLTIQLIGSIRQLFGEEGLDRLISQREGEMRKDYLKACRGVAGI 103 W L+ GH RFPDTHA L +QLI S+R +FG++GL++LI QRE E R YL C+ + + Sbjct: 77 WVLTELGHQRFPDTHAQLALQLIDSVRTIFGDDGLEKLIEQREAESRTKYLARCKNLP-L 135 Query: 104 PKKLDKLAALRAAEGYMARVEKDGKDWLLIEDHCPICAAATTCQGFCRSELQLFREVIGD 163 ++L +LA +R+ EGYMA+VE+DG WL IE+HCPICAAAT CQ FCRSEL LFR+V+G+ Sbjct: 136 AQRLAELAEVRSEEGYMAKVEQDGDSWLFIENHCPICAAATACQNFCRSELALFRDVVGE 195 Query: 164 AASVTREEHLLAGARRCVYRVSHA 187 A V RE++LL GA RCVYRV+ A Sbjct: 196 EAQVDREQYLLDGAGRCVYRVTLA 219