BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0095.p (603 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776623.1| methyl-accepting chemotaxis transducer trans... 721 0.0 ref|YP_004753016.1| methyl-accepting chemotaxis sensory transduc... 706 0.0 ref|YP_002981055.1| Cache sensor-containing methyl-accepting che... 671 0.0 ref|YP_001898575.1| methyl-accepting chemotaxis sensory transduc... 667 0.0 ref|ZP_07675989.1| chemotaxis sensory transducer [Ralstonia sp. ... 667 0.0 >ref|YP_003776623.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64715.1| methyl-accepting chemotaxis transducer transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 609 Score = 721 bits (1860), Expect = 0.0, Method: Compositional matrix adjust. Identities = 381/513 (74%), Positives = 439/513 (85%) Query: 2 KLSFKQRLWAPLVISLIALLAISLFNAYQAHNIRLEERKKDLINVAQVAMSTIKEYGELA 61 +LSF ++LW PLV+SLIALLAIS+F+A NIRLEERK DL N+ Q A+S +K YG LA Sbjct: 3 QLSFNKKLWLPLVLSLIALLAISIFSAVMVRNIRLEERKADLTNIGQTALSLVKGYGALA 62 Query: 62 KNGTMSKEEAQKTALARVKMMRYGADGYFSVSNSSAVTVMHPIKPELNGKDLTNFKDPAG 121 +G +SKE+AQK A +K +RYG DGYFS+S S + VMHPIK EL+GKDL+NFKDPAG Sbjct: 63 DSGALSKEDAQKLAKQAIKSLRYGTDGYFSISTSGQIIVMHPIKTELDGKDLSNFKDPAG 122 Query: 122 NQVFVDIAKAAASPQGGFINYIWPKVGSPDPVPKTSYAFRYEPWDWIVTTGVYMDDVNAA 181 N +FV+I KA + P+GGF++Y+WPKVG+ +PVPKTS+ Y+PWDW +TTG YMDD+NAA Sbjct: 123 NNLFVEITKAGSKPEGGFVHYLWPKVGAAEPVPKTSFVIAYKPWDWNLTTGAYMDDINAA 182 Query: 182 FTQSVYQLIAIVFGFSIILIALVVVNNRSILRIIGGDPGDAAEIANRISDGDLTLVINTA 241 F ++++Q+ + S L+ALV+V N ILR IGGDP AAE+ANRI+ GDLT I TA Sbjct: 183 FLRTLWQMALLFAAVSAALVALVIVINHGILRTIGGDPAQAAEVANRIAQGDLTPNIETA 242 Query: 242 PGDTSSLVYAFKRMRDSLTHTISNIKSSADTIATASSEIASGNLDLSSRTEQQAGSLEET 301 PGD+SSL+YA + MRDSL TI+NIK+SA TIA+AS EIASGNLDLS RTEQQAGS+EET Sbjct: 243 PGDSSSLLYAVRSMRDSLLSTITNIKASAGTIASASQEIASGNLDLSGRTEQQAGSIEET 302 Query: 302 ASAMEELTSTVKQNADNARQANQLAVSASEVAIQGGAVVSQVVDTMGSINESSRKIVDII 361 ASAMEELT+TVKQNADNARQANQLA SASEVAIQGG+VVSQVV TM I +SSRKI DII Sbjct: 303 ASAMEELTATVKQNADNARQANQLAESASEVAIQGGSVVSQVVQTMEGITDSSRKIADII 362 Query: 362 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSAAAKEIKTLIDDSV 421 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRS++AAKEIKTLIDDSV Sbjct: 363 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSASAAKEIKTLIDDSV 422 Query: 422 SKVDVGSKLVQQAGATMDEVVASVKRVTDIVGEISSASQEQSAGIGEVGQAITQMDEGTQ 481 +KVD GSKLV+QAGATM EVVASV+RVTDIVGEISSASQEQSAGI EVG+AITQMDEGTQ Sbjct: 423 AKVDTGSKLVEQAGATMTEVVASVRRVTDIVGEISSASQEQSAGIAEVGRAITQMDEGTQ 482 Query: 482 QNAALVEQAAAAAQSLQDQAATLAQLVGRFKLD 514 QNAALVEQAAAAAQSLQDQAATLA LVGRF +D Sbjct: 483 QNAALVEQAAAAAQSLQDQAATLAGLVGRFHVD 515 >ref|YP_004753016.1| methyl-accepting chemotaxis sensory transducer [Collimonas fungivorans Ter331] gb|AEK62193.1| methyl-accepting chemotaxis sensory transducer [Collimonas fungivorans Ter331] Length = 575 Score = 706 bits (1821), Expect = 0.0, Method: Compositional matrix adjust. Identities = 384/556 (69%), Positives = 452/556 (81%), Gaps = 10/556 (1%) Query: 2 KLSFKQRLWAPLVISLIALLAISLFNAYQAHNIRLEERKKDLINVAQVAMSTIKEYGELA 61 +LSF Q+LW PL++SL+AL +IS+FNAYQA IRL+ERK DL+NV+ VAM+ IKEYG +A Sbjct: 26 RLSFTQKLWLPLLVSLVALFSISVFNAYQARQIRLDERKSDLVNVSNVAMNVIKEYGAMA 85 Query: 62 KNGTMSKEEAQKTALARVKMMRYGADGYFSVSNSSAVTVMHPIKPELNGKDLTNFKDPAG 121 +G + K EAQ+ ALAR+K MRYG DGYFSVS S+ V VMHPIKPEL+G+ +++FKDP G Sbjct: 86 ASGALGKSEAQQQALARLKAMRYGKDGYFSVSTSNEVMVMHPIKPELDGRKMSDFKDPDG 145 Query: 122 NQVFVDIAKAAASPQGGFINYIWPKVGSPDPVPKTSYAFRYEPWDWIVTTGVYMDDVNAA 181 N VFV I+KA + GGFINY+WP+VG+ + VPK S+A Y+PWDWI TTG+Y+DD+N A Sbjct: 146 NLVFVLISKAGSQSGGGFINYVWPRVGAAEAVPKMSFALGYQPWDWIATTGIYVDDLNRA 205 Query: 182 FTQSVYQLIAIVFGFSIILIALVVVNNRSILRIIGGDPGDAAEIANRISDGDLTLVINTA 241 F QS+YQ AI+ ++ L+ALV+ +NRS+L IGGDPG AA+IANRI+ GDL+L I T Sbjct: 206 FMQSLYQAGAILLAVALALVALVIYSNRSMLAAIGGDPGHAADIANRIAGGDLSLDIATR 265 Query: 242 PGDTSSLVYAFKRMRDSLTHTISNIKSSADTIATASSEIASGNLDLSSRTEQQAGSLEET 301 PGDT SLVYA K MR SL HTI+NIKSSADTIATAS +IASGNLDLSSRTEQQAGSLEET Sbjct: 266 PGDTRSLVYAMKCMRASLLHTITNIKSSADTIATASGQIASGNLDLSSRTEQQAGSLEET 325 Query: 302 ASAMEELTSTVKQNADNARQANQLAVSASEVAIQGGAVVSQVVDTMGSINESSRKIVDII 361 ASAME+LTSTVKQNADNARQANQLAV+AS+VA AVVSQVVDTMG+I SS+KIVDII Sbjct: 326 ASAMEQLTSTVKQNADNARQANQLAVTASQVASNSSAVVSQVVDTMGNIRSSSKKIVDII 385 Query: 362 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSAAAKEIKTLIDDSV 421 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA+EVRSLAQRS+AAAKEIK LIDDSV Sbjct: 386 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAAEVRSLAQRSAAAAKEIKVLIDDSV 445 Query: 422 SKVDVGSKLVQQAGATMDEVVASVKRVTDIVGEISSASQEQSAGIGEVGQAITQMDEGTQ 481 S+V GS+LV+QAGATM EVV SVKRVTDI+GEI++ASQEQS+GI +V AITQMDE TQ Sbjct: 446 SQVGSGSRLVEQAGATMGEVVTSVKRVTDIIGEIATASQEQSSGIEQVNHAITQMDEVTQ 505 Query: 482 QNAALVEQAAAAAQSLQDQAATLAQLVGRFKLDAGHVXQLVGRFKLDAGHVQAPANPKLL 541 QNAALVEQAAAAA SLQ+QA +LAQ+V FK D+G L AG + P L Sbjct: 506 QNAALVEQAAAAAASLQEQAVSLAQMVSVFKTDSGPASP-----ALHAGAARRP-----L 555 Query: 542 LLLPHRASPRRLPKQR 557 + PH+A P R Sbjct: 556 DITPHQAQLGNRPAAR 571 >ref|YP_002981055.1| Cache sensor-containing methyl-accepting chemotaxis sensory transducer [Ralstonia pickettii 12D] gb|ACS62383.1| methyl-accepting chemotaxis sensory transducer with Cache sensor [Ralstonia pickettii 12D] Length = 618 Score = 671 bits (1730), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/514 (67%), Positives = 420/514 (81%) Query: 2 KLSFKQRLWAPLVISLIALLAISLFNAYQAHNIRLEERKKDLINVAQVAMSTIKEYGELA 61 KLSF+Q+LW PLVISL+AL IS+FNAYQA IR+EERK +L++V +AM+ +K+Y +L Sbjct: 3 KLSFRQKLWLPLVISLVALTLISVFNAYQAREIRMEERKNNLVSVTTMAMNLVKQYDDLT 62 Query: 62 KNGTMSKEEAQKTALARVKMMRYGADGYFSVSNSSAVTVMHPIKPELNGKDLTNFKDPAG 121 KNGT+SK+ AQK AL R K +RY DGYF++++S+ V VMHPIKPE GKD + FKD G Sbjct: 63 KNGTLSKDAAQKQALDRFKALRYDKDGYFTITSSNNVVVMHPIKPEFIGKDQSGFKDAQG 122 Query: 122 NQVFVDIAKAAASPQGGFINYIWPKVGSPDPVPKTSYAFRYEPWDWIVTTGVYMDDVNAA 181 N V+V ++ AA P+GGF +Y+WPKVG DPVPKT++A RYEPWDW+ +TGVYMDD+NAA Sbjct: 123 NAVYVGLSNAAKDPKGGFTSYVWPKVGGTDPVPKTAFAMRYEPWDWVFSTGVYMDDINAA 182 Query: 182 FTQSVYQLIAIVFGFSIILIALVVVNNRSILRIIGGDPGDAAEIANRISDGDLTLVINTA 241 F S+YQ ++ +L+ L V NRS+ R +GGDP AA++ANRI+ GDLT+ I T Sbjct: 183 FMTSLYQTGGLLLLVGGLLVLLGSVANRSLQRTLGGDPAYAADVANRIAGGDLTVEIATR 242 Query: 242 PGDTSSLVYAFKRMRDSLTHTISNIKSSADTIATASSEIASGNLDLSSRTEQQAGSLEET 301 D SL+YA RMR +L TI IK +++TI TA+ EIASGNLDLSSRTEQQA SLEET Sbjct: 243 ADDNDSLLYAMSRMRGALVDTIGRIKGASETIGTATREIASGNLDLSSRTEQQASSLEET 302 Query: 302 ASAMEELTSTVKQNADNARQANQLAVSASEVAIQGGAVVSQVVDTMGSINESSRKIVDII 361 ASAME+L STV+QNADNA+QANQLA SAS+VA++GG VV++VV+TMGSIN SSRKIVDII Sbjct: 303 ASAMEQLMSTVQQNADNAQQANQLAASASDVAVRGGDVVTRVVETMGSINASSRKIVDII 362 Query: 362 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSAAAKEIKTLIDDSV 421 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRS+AAAKEIK LIDDSV Sbjct: 363 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALIDDSV 422 Query: 422 SKVDVGSKLVQQAGATMDEVVASVKRVTDIVGEISSASQEQSAGIGEVGQAITQMDEGTQ 481 VD GS LV++AG TM E+VASVKRVTDIVGEISSASQEQ +GI EV A+TQ+D+ TQ Sbjct: 423 VNVDAGSALVEEAGTTMREIVASVKRVTDIVGEISSASQEQRSGIEEVSHAVTQLDDATQ 482 Query: 482 QNAALVEQAAAAAQSLQDQAATLAQLVGRFKLDA 515 QNAALVE+AAAAAQSL++QA +L Q+V +F+LDA Sbjct: 483 QNAALVEEAAAAAQSLEEQAVSLTQVVAQFRLDA 516 >ref|YP_001898575.1| methyl-accepting chemotaxis sensory transducer [Ralstonia pickettii 12J] gb|ACD26143.1| methyl-accepting chemotaxis sensory transducer [Ralstonia pickettii 12J] Length = 621 Score = 667 bits (1721), Expect = 0.0, Method: Compositional matrix adjust. Identities = 354/549 (64%), Positives = 435/549 (79%), Gaps = 12/549 (2%) Query: 2 KLSFKQRLWAPLVISLIALLAISLFNAYQAHNIRLEERKKDLINVAQVAMSTIKEYGELA 61 KLSF+Q+LW PL+ISL+AL IS+FNAYQA IR+EERK +L++V +A++ +K+Y +L Sbjct: 3 KLSFRQKLWLPLIISLVALTLISVFNAYQAREIRVEERKNNLVSVTTMAVNLVKQYDDLT 62 Query: 62 KNGTMSKEEAQKTALARVKMMRYGADGYFSVSNSSAVTVMHPIKPELNGKDLTNFKDPAG 121 KNGT+SK+ AQK AL R K +RY DGYF++++S+ V VMHPIKPE GKD + FKD G Sbjct: 63 KNGTLSKDAAQKEALDRFKALRYDKDGYFTITSSNNVVVMHPIKPEFIGKDQSGFKDAQG 122 Query: 122 NQVFVDIAKAAASPQGGFINYIWPKVGSPDPVPKTSYAFRYEPWDWIVTTGVYMDDVNAA 181 N V+V ++ AA P+GGF +Y+WPKVG +PVPKT++A RYEPWDW+ +TGVYMDD+NAA Sbjct: 123 NAVYVGLSNAAKDPKGGFTSYVWPKVGGSEPVPKTAFAMRYEPWDWVFSTGVYMDDINAA 182 Query: 182 FTQSVYQLIAIVFGFSIILIALVVVNNRSILRIIGGDPGDAAEIANRISDGDLTLVINTA 241 F S+YQ ++ +L+ L V NRS+ R +GGDP AA++ANRI+ GDLTL I T Sbjct: 183 FMTSLYQTGGLLVLVGGLLLLLGGVANRSLQRTLGGDPAYAADVANRIAGGDLTLEIATR 242 Query: 242 PGDTSSLVYAFKRMRDSLTHTISNIKSSADTIATASSEIASGNLDLSSRTEQQAGSLEET 301 D +SL+YA RMR +L TI IK +++TI TA+ EIASGNLDLSSRTEQQA SLEET Sbjct: 243 ADDNNSLLYAMSRMRGALVDTIGRIKGASETIGTATREIASGNLDLSSRTEQQASSLEET 302 Query: 302 ASAMEELTSTVKQNADNARQANQLAVSASEVAIQGGAVVSQVVDTMGSINESSRKIVDII 361 ASAME+L STV+QNADNA+QANQLA SAS+VA++GG VV++VV+TMGSIN SSRKIVDII Sbjct: 303 ASAMEQLMSTVQQNADNAQQANQLAASASDVAVRGGDVVTRVVETMGSINASSRKIVDII 362 Query: 362 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSAAAKEIKTLIDDSV 421 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRS+AAAKEIK LIDDSV Sbjct: 363 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALIDDSV 422 Query: 422 SKVDVGSKLVQQAGATMDEVVASVKRVTDIVGEISSASQEQSAGIGEVGQAITQMDEGTQ 481 VD GS LV++AG TM E+VASVKRVTDIVGEISSASQEQ +GI EV A+TQ+D+ TQ Sbjct: 423 VNVDAGSALVEEAGTTMREIVASVKRVTDIVGEISSASQEQRSGIEEVSHAVTQLDDATQ 482 Query: 482 QNAALVEQAAAAAQSLQDQAATLAQLVGRFKLDAGHVXQ---LVGRFKLDAGHVQ----- 533 QNAALVEQAAAAAQSL++QA +L Q+V +F+LDA H + +V R + V+ Sbjct: 483 QNAALVEQAAAAAQSLEEQAVSLTQVVAQFRLDA-HALRAPAMVARVEPAVAPVKPVALA 541 Query: 534 ---APANPK 539 APA+PK Sbjct: 542 TPMAPASPK 550 >ref|ZP_07675989.1| chemotaxis sensory transducer [Ralstonia sp. 5_7_47FAA] gb|EFP65733.1| chemotaxis sensory transducer [Ralstonia sp. 5_7_47FAA] Length = 618 Score = 667 bits (1720), Expect = 0.0, Method: Compositional matrix adjust. Identities = 344/514 (66%), Positives = 418/514 (81%) Query: 2 KLSFKQRLWAPLVISLIALLAISLFNAYQAHNIRLEERKKDLINVAQVAMSTIKEYGELA 61 KLSF+Q+LW PLVISL+AL IS+FNAYQA IR+EERK +L++V +AM+ +K+Y +L Sbjct: 3 KLSFRQKLWLPLVISLVALTLISVFNAYQAREIRVEERKNNLVSVTTMAMNLVKQYDDLT 62 Query: 62 KNGTMSKEEAQKTALARVKMMRYGADGYFSVSNSSAVTVMHPIKPELNGKDLTNFKDPAG 121 KNGT+SK+ AQK A+ R K +RY DGYF++++S+ V VMHPIKPE GKD + FKD G Sbjct: 63 KNGTLSKDAAQKQAIDRFKALRYDKDGYFTITSSNNVVVMHPIKPEFIGKDQSGFKDAQG 122 Query: 122 NQVFVDIAKAAASPQGGFINYIWPKVGSPDPVPKTSYAFRYEPWDWIVTTGVYMDDVNAA 181 N V+ + AA P+GGF +Y+WPKVG DPVPKT++A RYEPWDW+ +TGVYMDD+NAA Sbjct: 123 NAVYAGLTTAAKDPKGGFTSYVWPKVGGTDPVPKTAFAMRYEPWDWVFSTGVYMDDINAA 182 Query: 182 FTQSVYQLIAIVFGFSIILIALVVVNNRSILRIIGGDPGDAAEIANRISDGDLTLVINTA 241 F S+YQ ++ +L+ L V NRS+ R +GGDP AA++ANRI+ GDLT+ I T Sbjct: 183 FMTSLYQTGGLLLLVGGLLVLLGSVANRSLQRTLGGDPAYAADVANRIAGGDLTVEIATR 242 Query: 242 PGDTSSLVYAFKRMRDSLTHTISNIKSSADTIATASSEIASGNLDLSSRTEQQAGSLEET 301 D SL+YA RMR +L TI IK +++TI TA+ EIASGNLDLSSRTEQQA SLEET Sbjct: 243 ADDNDSLLYAMSRMRGALVDTIGRIKGASETIGTATREIASGNLDLSSRTEQQASSLEET 302 Query: 302 ASAMEELTSTVKQNADNARQANQLAVSASEVAIQGGAVVSQVVDTMGSINESSRKIVDII 361 ASAME+L STV+QNADNA+QANQLA SAS+VA++GG VV++VV+TMGSIN SSRKIVDII Sbjct: 303 ASAMEQLMSTVQQNADNAQQANQLAASASDVAVRGGDVVTRVVETMGSINASSRKIVDII 362 Query: 362 SVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVASEVRSLAQRSSAAAKEIKTLIDDSV 421 VIDGIAFQTNILALNAAVEAARAGEQGRGFAVVA EVRSLAQRS+AAAKEIK LIDDSV Sbjct: 363 GVIDGIAFQTNILALNAAVEAARAGEQGRGFAVVAGEVRSLAQRSAAAAKEIKALIDDSV 422 Query: 422 SKVDVGSKLVQQAGATMDEVVASVKRVTDIVGEISSASQEQSAGIGEVGQAITQMDEGTQ 481 VD GS LV++AG TM E+VASVKRVTDIVGEISSASQEQ +GI EV A+TQ+D+ TQ Sbjct: 423 VNVDAGSALVEEAGTTMREIVASVKRVTDIVGEISSASQEQRSGIEEVSHAVTQLDDATQ 482 Query: 482 QNAALVEQAAAAAQSLQDQAATLAQLVGRFKLDA 515 QNAALVE+AAAAAQSL++QA +L Q+V +F+LDA Sbjct: 483 QNAALVEEAAAAAQSLEEQAVSLTQVVAQFRLDA 516