BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0093.p (321 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08401879.1| LysR family transcriptional regulator [Rubriv... 377 e-102 ref|YP_001770696.1| LysR family transcriptional regulator [Methy... 365 7e-99 ref|YP_001415789.1| LysR family transcriptional regulator [Xanth... 333 2e-89 ref|ZP_08629140.1| transcriptional regulator, LysR family [Brady... 323 2e-86 ref|YP_001417095.1| LysR family transcriptional regulator [Xanth... 317 2e-84 >ref|ZP_08401879.1| LysR family transcriptional regulator [Rubrivivax benzoatilyticus JA2] gb|EGJ10212.1| LysR family transcriptional regulator [Rubrivivax benzoatilyticus JA2] Length = 299 Score = 377 bits (969), Expect = e-102, Method: Compositional matrix adjust. Identities = 180/299 (60%), Positives = 231/299 (77%), Gaps = 1/299 (0%) Query: 1 MNKFDWNDLQAFLAVVRAGRLTVAARQLGIDHSTLSRRIVGLEESLGVALFDRRSAGYAL 60 M FDWNDL+AFLA+ R GRLTVAARQLG+DHSTLSRRI GLE +LG LFDRR AG+ Sbjct: 1 MPDFDWNDLRAFLAMARTGRLTVAARQLGVDHSTLSRRISGLEAALGTPLFDRRPAGFVP 60 Query: 61 TVEGERLIPEAEAMESLAVRIHARQDDAAQGLTGSIRIGTPEAWGTYFLAPQLSLLAQRH 120 T EGERL+P+AEAME++A+R+ R DA Q L+GS+R+G+PE +GTYFL P+L+ LA RH Sbjct: 61 TPEGERLLPDAEAMEAMALRLTGRLADAGQQLSGSVRVGSPEGFGTYFLGPRLATLATRH 120 Query: 121 PQLEVELIANPRMFSLSKREADIAVSMTRPEQGRLYARRLNDYELGIYAARDYLRRKPAV 180 PQLE+EL+A PR FSLSKREAD+A++MTRP QGR+YA +L DY LG+YA+ YL+ + A+ Sbjct: 121 PQLELELVAMPRSFSLSKREADLAITMTRPAQGRVYAHKLVDYALGLYASPQYLQGRRAI 180 Query: 181 EDKSQLETHPWVGYVEDLMWSRELDYLSEISPALRPHIRISNIISQMAAVVGGAGLGVLP 240 + L +H W+GYVE+LMW+ ELDYL ++ L P +RISN+ISQM A+ GGAGLGVLP Sbjct: 181 RQREDLTSHRWIGYVEELMWTEELDYLPQVQRGLVPQLRISNVISQMMALAGGAGLGVLP 240 Query: 241 CFMARGEKKLVRLLP-QVKLYRSYWLITHADARDIVRVNVVADFIAERVEAEGASFWTD 298 FMAR + LV++L +V+L RSYW +TH D ++ RV V +F+ E+V A G FW D Sbjct: 241 HFMARQQPGLVQVLADKVRLVRSYWCVTHEDTHELARVRRVVEFLDEQVAAAGEDFWLD 299 >ref|YP_001770696.1| LysR family transcriptional regulator [Methylobacterium sp. 4-46] gb|ACA18262.1| transcriptional regulator, LysR family [Methylobacterium sp. 4-46] Length = 301 Score = 365 bits (936), Expect = 7e-99, Method: Compositional matrix adjust. Identities = 173/297 (58%), Positives = 230/297 (77%), Gaps = 1/297 (0%) Query: 1 MNKFDWNDLQAFLAVVRAGRLTVAARQLGIDHSTLSRRIVGLEESLGVALFDRRSAGYAL 60 M+ FDWNDL+AFLAV RAGRLTVAA+++GIDHSTLSRR+ LE +LG LF RR +G+ L Sbjct: 1 MSDFDWNDLRAFLAVARAGRLTVAAQRMGIDHSTLSRRLSALESALGTRLFGRRPSGFVL 60 Query: 61 TVEGERLIPEAEAMESLAVRIHARQDDAAQGLTGSIRIGTPEAWGTYFLAPQLSLLAQRH 120 T +GERL+ +AE +ES+A+ + AR D+A+ ++G++R+GTPEA+GT FLAP+L+ L Sbjct: 61 TSDGERLLGDAERIESVAITLRARLDEASHQVSGTVRVGTPEAFGTTFLAPRLAQLFAAQ 120 Query: 121 PQLEVELIANPRMFSLSKREADIAVSMTRPEQGRLYARRLNDYELGIYAARDYLRRKPAV 180 P LE+EL+ANPR FSLSKREAD+AV++TRPE GRL+AR+L DY LG+YAAR Y A+ Sbjct: 121 PALEIELVANPRSFSLSKREADLAVTLTRPETGRLFARKLVDYALGLYAARSYAEAAEAI 180 Query: 181 EDKSQLETHPWVGYVEDLMWSRELDYLSEISPALRPHIRISNIISQMAAVVGGAGLGVLP 240 L H WVGYVEDL+W+ EL+YL ++S A+ P RISN+I+QM AV GGAGLG+LP Sbjct: 181 RTVDDLHRHRWVGYVEDLLWTSELNYLPQVSSAIHPQARISNVITQMEAVRGGAGLGILP 240 Query: 241 CFMARGEKKLVRLLPQ-VKLYRSYWLITHADARDIVRVNVVADFIAERVEAEGASFW 296 F+ARG L+ +LPQ V++ R+YWLI HAD RD+ RV +V++F+ + EA G +FW Sbjct: 241 HFLARGHPDLIAVLPQEVRIVRAYWLIAHADTRDLPRVRLVSEFLTRQAEAAGDAFW 297 >ref|YP_001415789.1| LysR family transcriptional regulator [Xanthobacter autotrophicus Py2] gb|ABS66132.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus Py2] Length = 316 Score = 333 bits (855), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 158/289 (54%), Positives = 207/289 (71%), Gaps = 1/289 (0%) Query: 1 MNKFDWNDLQAFLAVVRAGRLTVAARQLGIDHSTLSRRIVGLEESLGVALFDRRSAGYAL 60 M DWNDLQAFLAVVRAGRLT AA+ + +DHSTLSRRI GLE +L LF+RR AGY Sbjct: 15 MRDLDWNDLQAFLAVVRAGRLTAAAQAMRVDHSTLSRRITGLEAALKTRLFERRPAGYVP 74 Query: 61 TVEGERLIPEAEAMESLAVRIHARQDDAAQGLTGSIRIGTPEAWGTYFLAPQLSLLAQRH 120 T GERL+ EAEA+ES+ + + A+ D GL GS+RIGTPE +GTYFL PQ+ RH Sbjct: 75 TAAGERLVAEAEAVESIVIGMRAKLTDQVLGLAGSVRIGTPEGFGTYFLTPQMIHFCARH 134 Query: 121 PQLEVELIANPRMFSLSKREADIAVSMTRPEQGRLYARRLNDYELGIYAARDYLRRKPAV 180 +L+VEL+ANPR SLSKREADI + M RPE+GRL+A RL DYE+G+YA+R YL + + Sbjct: 135 RELQVELVANPRTVSLSKREADIGIMMARPEEGRLHATRLTDYEMGLYASRHYLAQHAPI 194 Query: 181 EDKSQLETHPWVGYVEDLMWSRELDYLSEISPALRPHIRISNIISQMAAVVGGAGLGVLP 240 ++ + H ++GY++DL+ + Y++E+ AL P +R+SNII+Q+ A G GL +LP Sbjct: 195 ASRADIRQHAFIGYIDDLLPTAAHGYVAELDKALNPQMRMSNIITQLVAATNGGGLCMLP 254 Query: 241 CFMARGEKKLVRLLP-QVKLYRSYWLITHADARDIVRVNVVADFIAERV 288 CFMA LVRLLP ++ + RSYWL+ H+D R++ RV V DFIAE V Sbjct: 255 CFMAGTSADLVRLLPEEIAITRSYWLVIHSDVRELARVRAVIDFIAETV 303 >ref|ZP_08629140.1| transcriptional regulator, LysR family [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08499.1| transcriptional regulator, LysR family [Bradyrhizobiaceae bacterium SG-6C] Length = 302 Score = 323 bits (828), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 150/294 (51%), Positives = 218/294 (74%) Query: 2 NKFDWNDLQAFLAVVRAGRLTVAARQLGIDHSTLSRRIVGLEESLGVALFDRRSAGYALT 61 ++FDWN +++FLA+ R+G +T AA++L ID+STLSRRI LE SLG LFDRR++G +LT Sbjct: 3 DQFDWNLVRSFLAITRSGSMTAAAKRLKIDYSTLSRRIAALEASLGSQLFDRRTSGSSLT 62 Query: 62 VEGERLIPEAEAMESLAVRIHARQDDAAQGLTGSIRIGTPEAWGTYFLAPQLSLLAQRHP 121 GERL+ AE M+ LA D+ TG++RIGTP+ +GT FLAP+L L+ RHP Sbjct: 63 EAGERLLEMAEQMDQLATSAAQSIGDSKLQATGAVRIGTPDGFGTKFLAPRLGELSDRHP 122 Query: 122 QLEVELIANPRMFSLSKREADIAVSMTRPEQGRLYARRLNDYELGIYAARDYLRRKPAVE 181 +L +EL+A PR FSLS+READIAVS+T+P +GRL++R+L DYELG+YA++DYL PA++ Sbjct: 123 ELTIELVAMPREFSLSRREADIAVSLTQPSEGRLHSRKLTDYELGLYASKDYLANHPAIK 182 Query: 182 DKSQLETHPWVGYVEDLMWSRELDYLSEISPALRPHIRISNIISQMAAVVGGAGLGVLPC 241 + + +H ++ Y++DL++S EL+Y ++P LRP I+ SN+I+Q+ + V GAGL VLP Sbjct: 183 TAADVPSHRFISYIDDLVYSPELEYTHFVAPELRPAIKSSNLIAQLNSTVAGAGLCVLPY 242 Query: 242 FMARGEKKLVRLLPQVKLYRSYWLITHADARDIVRVNVVADFIAERVEAEGASF 295 F+A+ E +LVR+LP +L R++WL+ H+D R+I RV V ADF+AE+ + F Sbjct: 243 FIAQTEPQLVRVLPSFRLIRTFWLVLHSDLRNIARVRVTADFMAEQANKAQSLF 296 >ref|YP_001417095.1| LysR family transcriptional regulator [Xanthobacter autotrophicus Py2] gb|ABS67438.1| transcriptional regulator, LysR family [Xanthobacter autotrophicus Py2] Length = 307 Score = 317 bits (811), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 154/302 (50%), Positives = 218/302 (72%), Gaps = 6/302 (1%) Query: 2 NKFDWNDLQAFLAVVRAGRLTVAARQLGIDHSTLSRRIVGLEESLGVALFDRRSAGYALT 61 FDW+DL FLAV RAGRLT AA +L ++HST+SRRI LEE+LG LFDRR GY LT Sbjct: 4 GDFDWSDLTFFLAVARAGRLTAAAARLKVEHSTVSRRIGALEEALGAKLFDRRPHGYGLT 63 Query: 62 VEGERLIPEAEAMESLAVRIHARQDDAAQGLTGSIRIGTPEAWGTYFLAPQLSLLAQRHP 121 GERL+ AE ME+LA+ A G+ G++RIG P+ +GT+FLAP++S LA HP Sbjct: 64 AAGERLMAAAEGMETLALAAQGEIGGADLGVAGTVRIGAPDGFGTFFLAPRISALADLHP 123 Query: 122 QLEVELIANPRMFSLSKREADIAVSMTRPEQGRLYARRLNDYELGIYAARDYLRRKPAVE 181 +L+++L+A PR+FSLSKREADIA+S++RP++GRL+AR+L DY LG+YA+R YL R +E Sbjct: 124 ELDIQLLAMPRLFSLSKREADIAISLSRPKEGRLHARKLTDYRLGLYASRAYLERHGPIE 183 Query: 182 DKSQLETHPWVGYVEDLMWSRELDYLSEISPALRPHIRISNIISQMAAVVGGAGLGVLPC 241 ++ L+ HP++GYV+DL+++ ELDY+ ++ +R ++ S++++Q+ A GAG+ VLPC Sbjct: 184 SRAGLQRHPFIGYVDDLIYAPELDYVPLVAKDIRVRLKSSSLVAQLTATQAGAGVCVLPC 243 Query: 242 FMA---RGEKK--LVRLLP-QVKLYRSYWLITHADARDIVRVNVVADFIAERVEAEGASF 295 FMA G++ LV +LP V L R++WL+TH D RD+ R+ V ADFIA V+A F Sbjct: 244 FMADLFAGDRPNALVPILPGDVGLTRTFWLLTHTDTRDLARIRVAADFIAGVVQAARGQF 303 Query: 296 WT 297 + Sbjct: 304 LS 305