BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0089.p         (102 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776638.1| hypothetical protein Hsero_3249 [Herbaspiril...   132   2e-29
ref|YP_002287729.1| hypothetical protein OCAR_4722 [Oligotropha ...   115   3e-24
ref|YP_487132.1| hypothetical protein RPB_3526 [Rhodopseudomonas...   114   5e-24
ref|YP_001564900.1| hypothetical protein Daci_3884 [Delftia acid...   114   7e-24
ref|YP_004488303.1| hypothetical protein DelCs14_2938 [Delftia s...   113   8e-24

>ref|YP_003776638.1| hypothetical protein Hsero_3249 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64730.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 239

 Score =  132 bits (331), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 58/87 (66%), Positives = 69/87 (79%)

Query: 3   TGKPGEFKLVYKGQPLAKTKITIVTSAGWGKEGHTNEQGLVNFDLPWQGTYVVEAHHIDK 62
           TGKPG+FK+ YK   L K K+ +VT +GW KE H++EQGLV FDLPWQG YV E HH DK
Sbjct: 140 TGKPGQFKVTYKNAALPKAKVGLVTPSGWMKEAHSDEQGLVQFDLPWQGVYVAEVHHTDK 199

Query: 63  TAGERDGKPYDVASFVTSLTVAQTKGI 89
           TAGERDGKPYD ASFVT+L++ Q KG+
Sbjct: 200 TAGERDGKPYDTASFVTTLSLVQAKGM 226


>ref|YP_002287729.1| hypothetical protein OCAR_4722 [Oligotropha carboxidovorans OM5]
 ref|YP_004634145.1| hypothetical protein OCA5_c32280 [Oligotropha carboxidovorans OM5]
 gb|ACI91864.1| conserved hypothetical protein [Oligotropha carboxidovorans OM5]
 gb|AEI04274.1| hypothetical protein OCA4_c31760 [Oligotropha carboxidovorans OM4]
 gb|AEI07904.1| hypothetical protein OCA5_c32280 [Oligotropha carboxidovorans OM5]
          Length = 242

 Score =  115 bits (287), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 55/106 (51%), Positives = 74/106 (69%), Gaps = 4/106 (3%)

Query: 1   VTTGKPGEFKLVYKGQPLAKTKITIVTSAGWGKEGHTNEQGLVNFDLPWQGTYVVEAHHI 60
           V TG+ G+FKL++K QP AKTK+T+VT +GW KE HT+EQGLV FD+PW+G YV E    
Sbjct: 137 VPTGEAGQFKLLFKNQPKAKTKVTLVTQSGWSKEAHTDEQGLVKFDMPWKGAYVAEVSVN 196

Query: 61  DKTAGERDG----KPYDVASFVTSLTVAQTKGIKALPTPPAATPNK 102
           D++AGER G    + YD  S+VT++T     G+  +P+ P ATP K
Sbjct: 197 DRSAGERPGASGAEKYDAVSYVTTVTYVNGSGLDPIPSGPPATPGK 242


>ref|YP_487132.1| hypothetical protein RPB_3526 [Rhodopseudomonas palustris HaA2]
 gb|ABD08221.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
          Length = 240

 Score =  114 bits (285), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 53/100 (53%), Positives = 70/100 (70%)

Query: 1   VTTGKPGEFKLVYKGQPLAKTKITIVTSAGWGKEGHTNEQGLVNFDLPWQGTYVVEAHHI 60
           V TGK GEFKLV+K QP  KTK+T+ T +GW KE HT+ QG V+F++PW+G YVVE  + 
Sbjct: 137 VPTGKTGEFKLVFKDQPKPKTKVTLTTQSGWAKEAHTDAQGQVSFEMPWKGVYVVEVSYT 196

Query: 61  DKTAGERDGKPYDVASFVTSLTVAQTKGIKALPTPPAATP 100
           D+T GER G+ +D   + T+LT  Q  G+  +P  PAATP
Sbjct: 197 DRTPGERAGEKFDAVVYGTTLTFMQADGLPPIPAGPAATP 236


>ref|YP_001564900.1| hypothetical protein Daci_3884 [Delftia acidovorans SPH-1]
 gb|ABX36515.1| conserved hypothetical protein [Delftia acidovorans SPH-1]
          Length = 242

 Score =  114 bits (284), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 53/106 (50%), Positives = 72/106 (67%), Gaps = 4/106 (3%)

Query: 1   VTTGKPGEFKLVYKGQPLAKTKITIVTSAGWGKEGHTNEQGLVNFDLPWQGTYVVEAHHI 60
           V +GK GEFK++YKGQPL K K+ +   +GW KE H +EQGLV FD+PW+GTYV EA H 
Sbjct: 137 VPSGKAGEFKVIYKGQPLPKAKVVLTVQSGWSKEAHADEQGLVQFDMPWKGTYVAEATHD 196

Query: 61  DKTAGERDG----KPYDVASFVTSLTVAQTKGIKALPTPPAATPNK 102
           +++ GER G    + YD   +VTS+T  + +G+  +   PAA PNK
Sbjct: 197 ERSGGERTGPNGAEKYDGVHYVTSVTYVKPEGVAPIAAGPAAKPNK 242


>ref|YP_004488303.1| hypothetical protein DelCs14_2938 [Delftia sp. Cs1-4]
 gb|AEF89948.1| hypothetical protein DelCs14_2938 [Delftia sp. Cs1-4]
          Length = 242

 Score =  113 bits (283), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 53/106 (50%), Positives = 72/106 (67%), Gaps = 4/106 (3%)

Query: 1   VTTGKPGEFKLVYKGQPLAKTKITIVTSAGWGKEGHTNEQGLVNFDLPWQGTYVVEAHHI 60
           V +GK GEFK++YKGQPL K K+ +   +GW KE H +EQGLV FD+PW+GTYV EA H 
Sbjct: 137 VPSGKAGEFKVIYKGQPLPKAKVVLTVQSGWSKEAHADEQGLVQFDMPWKGTYVAEATHD 196

Query: 61  DKTAGERDG----KPYDVASFVTSLTVAQTKGIKALPTPPAATPNK 102
           +++ GER G    + YD   +VTS+T  + +G+  +   PAA PNK
Sbjct: 197 ERSGGERTGPNGAEKYDGVHYVTSVTYVKPEGVAPIAAGPAAKPNK 242