BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0088.p         (140 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776638.1| hypothetical protein Hsero_3249 [Herbaspiril...   111   4e-23
ref|YP_487132.1| hypothetical protein RPB_3526 [Rhodopseudomonas...    82   3e-14
ref|YP_004488303.1| hypothetical protein DelCs14_2938 [Delftia s...    78   4e-13
ref|YP_001564900.1| hypothetical protein Daci_3884 [Delftia acid...    78   5e-13
ref|YP_004109979.1| hypothetical protein Rpdx1_3679 [Rhodopseudo...    76   2e-12

>ref|YP_003776638.1| hypothetical protein Hsero_3249 [Herbaspirillum seropedicae SmR1]
 gb|ADJ64730.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 239

 Score =  111 bits (278), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 52/86 (60%), Positives = 68/86 (79%), Gaps = 1/86 (1%)

Query: 3  LKRL-VIPALLSTLLLAASAQAHHVWLQQDAKSAHLYFGEFGENLRETSPGLLDRFVQPS 61
          +KRL ++  L ++LLLA  A AH +WLQQD K A LYFGEFG+NLRE SPGLLD+FV PS
Sbjct: 1  MKRLAIVSGLFTSLLLALPASAHQIWLQQDGKEAKLYFGEFGDNLREVSPGLLDKFVSPS 60

Query: 62 AVLLGANGDKTLDVNKGKNAYALSAR 87
          AVL+ A GD+TL ++K  +A++LSA+
Sbjct: 61 AVLISAQGDRTLALSKQSDAFSLSAK 86


>ref|YP_487132.1| hypothetical protein RPB_3526 [Rhodopseudomonas palustris HaA2]
 gb|ABD08221.1| conserved hypothetical protein [Rhodopseudomonas palustris HaA2]
          Length = 240

 Score = 81.6 bits (200), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 39/83 (46%), Positives = 58/83 (69%), Gaps = 2/83 (2%)

Query: 3  LKRLVIPALLSTLLLAASAQAHHVWLQQ-DAKSAHLYFGEFGENLRETSPGLLDRFVQPS 61
          + +L I AL++ L    SAQAH +W++Q D ++A + FGEFG+NLRE SPGLLD+F +P+
Sbjct: 1  MNKLSI-ALVALLGAMNSAQAHQIWIEQADGQNAVVRFGEFGDNLREVSPGLLDKFSKPT 59

Query: 62 AVLLGANGDKTLDVNKGKNAYAL 84
          A L+ A G++T+D  K    + L
Sbjct: 60 ATLISAKGEQTVDATKTATGFTL 82


>ref|YP_004488303.1| hypothetical protein DelCs14_2938 [Delftia sp. Cs1-4]
 gb|AEF89948.1| hypothetical protein DelCs14_2938 [Delftia sp. Cs1-4]
          Length = 242

 Score = 77.8 bits (190), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 41/76 (53%), Positives = 54/76 (71%), Gaps = 2/76 (2%)

Query: 11 LLSTLLLAASA-QAHHVWLQQDA-KSAHLYFGEFGENLRETSPGLLDRFVQPSAVLLGAN 68
          L+S LL A+ A QAH +WL+Q A ++A + FGEFG+NLRETSPGLLD+F +P A L+ A 
Sbjct: 7  LVSALLAASGASQAHQIWLEQPAGETAVIRFGEFGDNLRETSPGLLDKFGKPVATLVSAQ 66

Query: 69 GDKTLDVNKGKNAYAL 84
          G+K  D  K    +AL
Sbjct: 67 GEKAADGRKTGTGFAL 82


>ref|YP_001564900.1| hypothetical protein Daci_3884 [Delftia acidovorans SPH-1]
 gb|ABX36515.1| conserved hypothetical protein [Delftia acidovorans SPH-1]
          Length = 242

 Score = 77.8 bits (190), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 41/76 (53%), Positives = 54/76 (71%), Gaps = 2/76 (2%)

Query: 11 LLSTLLLAASA-QAHHVWLQQDA-KSAHLYFGEFGENLRETSPGLLDRFVQPSAVLLGAN 68
          L+S LL A+ A QAH +WL+Q A ++A + FGEFG+NLRETSPGLLD+F +P A L+ A 
Sbjct: 7  LVSALLAASGASQAHQIWLEQPAGETAVIRFGEFGDNLRETSPGLLDKFGKPVATLVSAQ 66

Query: 69 GDKTLDVNKGKNAYAL 84
          G+K  D  K    +AL
Sbjct: 67 GEKAADGRKTGTGFAL 82


>ref|YP_004109979.1| hypothetical protein Rpdx1_3679 [Rhodopseudomonas palustris DX-1]
 gb|ADU45246.1| hypothetical protein Rpdx1_3679 [Rhodopseudomonas palustris DX-1]
          Length = 244

 Score = 76.3 bits (186), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 38/82 (46%), Positives = 56/82 (68%), Gaps = 1/82 (1%)

Query: 3  LKRLVIPALLSTLLLAASAQAHHVWLQQDAKSAHLYFGEFGENLRETSPGLLDRFVQPSA 62
          +K+L + A+L+TL    SAQAH +W++Q    A + FGEFGENLRE SPGLLD+F + +A
Sbjct: 1  MKKLSL-AMLATLGAMTSAQAHQIWIEQADGGAVVRFGEFGENLREASPGLLDKFSKVTA 59

Query: 63 VLLGANGDKTLDVNKGKNAYAL 84
           LL A G++  + +K  + + L
Sbjct: 60 TLLSAMGEQKAEASKIASGFKL 81