BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0066.p (283 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776756.1| glycine rich transmembrane protein [Herbaspi... 296 3e-78 ref|YP_004754348.1| hypothetical protein CFU_3701 [Collimonas fu... 253 3e-65 ref|ZP_08272826.1| Beta-propeller domains of methanol dehydrogen... 250 2e-64 ref|YP_001098961.1| putative glycine rich transmembrane protein ... 244 2e-62 ref|YP_001352293.1| hypothetical protein mma_0603 [Janthinobacte... 239 2e-61 >ref|YP_003776756.1| glycine rich transmembrane protein [Herbaspirillum seropedicae SmR1] gb|ADJ64848.1| glycine rich transmembrane protein [Herbaspirillum seropedicae SmR1] Length = 283 Score = 296 bits (757), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 159/245 (64%), Positives = 186/245 (75%), Gaps = 10/245 (4%) Query: 6 RLLAFCLFILLTGSFRSAGAQD-FVAVPALTSHVTDQAGMLDEQQRRTLDQVLTDYETRT 64 +LL C + A A D V VP L+ HV DQ +L QQR+ L+ VLT+ E RT Sbjct: 3 KLLLSCWLLAWLALAGPARADDGLVPVPPLSGHVIDQVHLLQAQQRQALEGVLTEIEQRT 62 Query: 65 GSQIAVLLIASTAPEAIEQYGIRVADAWKLGRKGIDDGVILIVAKDNPKALRRLRIEAGR 124 GSQI VLL++STAPEAIEQY IRVADAWKLGRKGIDDGVILIVAKDNPK+LRRLRIEAGR Sbjct: 63 GSQIGVLLMSSTAPEAIEQYSIRVADAWKLGRKGIDDGVILIVAKDNPKSLRRLRIEAGR 122 Query: 125 GVQGSLTDAQSKRILEDVIAPHFRQNDYYGGLAAGVSALTSLLDRENLPAAKKEAA---G 181 GVQGSLTDAQSKRILEDVIAPHFRQND+YGGLAAGV+A+T+LL++E LP +K++A+ Sbjct: 123 GVQGSLTDAQSKRILEDVIAPHFRQNDFYGGLAAGVTAITTLLEQEKLPPSKRQASTAQP 182 Query: 182 QDDAGWLEVAVLVIMLAVFFTALLLVRRRSAGRNNLNSNTWG----NAAGVIIGSILNEA 237 D GW+ + V+ + L VFF+ LL RR S RNNLN N WG AGVIIGSIL+EA Sbjct: 183 SDGGGWITLLVIGLFLVVFFSVLLKSRRGS--RNNLNDNDWGRGRSTTAGVIIGSILDEA 240 Query: 238 ARSSS 242 AR +S Sbjct: 241 ARQAS 245 >ref|YP_004754348.1| hypothetical protein CFU_3701 [Collimonas fungivorans Ter331] gb|AEK63525.1| conserved hypothetical protein, putative glycine rich transmembrane protein [Collimonas fungivorans Ter331] Length = 288 Score = 253 bits (645), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 129/220 (58%), Positives = 159/220 (72%), Gaps = 5/220 (2%) Query: 22 SAGAQDFVAVPALTSHVTDQAGMLDEQQRRTLDQVLTDYETRTGSQIAVLLIASTAPEAI 81 A AQ VAVP L +HVTD AGML QR LD L++YE RTGSQIAVLL++ T PE I Sbjct: 29 PASAQTQVAVPPLQAHVTDLAGMLQPAQRDALDNTLSEYEARTGSQIAVLLLSKTEPEGI 88 Query: 82 EQYGIRVADAWKLGRKGIDDGVILIVAKDNPKALRRLRIEAGRGVQGSLTDAQSKRILED 141 E Y +RVADAWKLGRKGIDDGVIL+VAKDNPKALRR+ I GRGVQG+LTDAQSKR+L++ Sbjct: 89 EDYAVRVADAWKLGRKGIDDGVILLVAKDNPKALRRMMILTGRGVQGTLTDAQSKRVLQE 148 Query: 142 VIAPHFRQNDYYGGLAAGVSALTSLLDRENL-PAAKKEAAGQDDAG-WLEVAVLVIMLAV 199 +IAP+F + D+YGGL AG+SA+ LLD+EN P ++K Q+ + WL ++ Sbjct: 149 IIAPYFSKGDFYGGLTAGISAIMPLLDQENFAPPSRKSGPAQEPSSDWLGALAPLLFFGF 208 Query: 200 FFTALLLVRRRSAGR---NNLNSNTWGNAAGVIIGSILNE 236 ++ R RS G +LNSN WGNAAGVIIGSIL++ Sbjct: 209 IILITIISRARSGGAGSGRSLNSNVWGNAAGVIIGSILSQ 248 >ref|ZP_08272826.1| Beta-propeller domains of methanol dehydrogenase type [Oxalobacteraceae bacterium IMCC9480] gb|EGF33696.1| Beta-propeller domains of methanol dehydrogenase type [Oxalobacteraceae bacterium IMCC9480] Length = 265 Score = 250 bits (638), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 142/229 (62%), Positives = 165/229 (72%), Gaps = 6/229 (2%) Query: 7 LLAFCLFILLTGSFRSAGAQDFVAVPALTSHVTDQAGMLDEQQRRTLDQVLTDYETRTGS 66 L F L ILLTGS AGAQ VAVP LT HV DQA ML Q L+ LT YE RTGS Sbjct: 3 LTRFVLAILLTGSLSLAGAQALVAVPPLTGHVIDQAAMLQAPQLAALEATLTQYEARTGS 62 Query: 67 QIAVLLIASTAPEAIEQYGIRVADAWKLGRKGIDDGVILIVAKDNPKALRRLRIEAGRGV 126 QI VLL+ STAPE IEQY IRVADAWKLGR G+DDGVIL+VAKDNPK RLRIEAGRGV Sbjct: 63 QIGVLLVPSTAPETIEQYSIRVADAWKLGRTGVDDGVILLVAKDNPKGSGRLRIEAGRGV 122 Query: 127 QGSLTDAQSKRILEDVIAPHFRQNDYYGGLAAGVSALTSLLDRENLPAAKKEAAGQDDAG 186 QGSLTD QSKRIL++VIAP+F++ND+ GGLAAG +A+ SLLD+E LPAA + A DAG Sbjct: 123 QGSLTDLQSKRILQEVIAPYFQRNDFNGGLAAGTTAIMSLLDKEQLPAAPAQTASPRDAG 182 Query: 187 WLEVAVLVIMLAVFFTALLL---VRRRSAGRNNLNSNTWGNAAGVIIGS 232 V++ ++ + F A++L + R GRN L WGN AGVI+GS Sbjct: 183 ---VSLAALLPLLLFGAVMLAGALTRGRRGRNRLGQGDWGNTAGVILGS 228 >ref|YP_001098961.1| putative glycine rich transmembrane protein [Herminiimonas arsenicoxydans] emb|CAL60834.1| conserved hypothetical protein; putative exported protein [Herminiimonas arsenicoxydans] Length = 267 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 140/244 (57%), Positives = 169/244 (69%), Gaps = 16/244 (6%) Query: 1 MQRFPRLLAFCL--FILLTGSFRSAGAQDFVAVPALTSHVTDQAGMLDEQQRRTLDQVLT 58 M+ +LLA L F +L AGAQ+ VAVP L VTD AGML+ QR TL+ VL Sbjct: 1 MKILRQLLACTLAFFCVL------AGAQNLVAVPQLKERVTDLAGMLNAGQRTTLENVLA 54 Query: 59 DYETRTGSQIAVLLIASTAPEAIEQYGIRVADAWKLGRKGIDDGVILIVAKDNPKALRRL 118 DYETRTGSQIAVLLI ST PE IEQY IRVAD WKLGRKG+DDGVIL++AK+N A R+ Sbjct: 55 DYETRTGSQIAVLLIDSTEPETIEQYSIRVADTWKLGRKGVDDGVILLIAKNNSTASGRM 114 Query: 119 RIEAGRGVQGSLTDAQSKRILEDVIAPHFRQNDYYGGLAAGVSALTSLLDRENLPAAKK- 177 RIE GRGVQG LTDAQSKR+L+DVIAPHFRQNDYYGGLA+G+S +TSLLD+E P + Sbjct: 115 RIETGRGVQGVLTDAQSKRVLQDVIAPHFRQNDYYGGLASGISVITSLLDKEAFPEPAQG 174 Query: 178 -EAAGQDDAGWLEVAVLVIMLAVFFTALLLVRRRSAGRNNLNSNTWGNAAGVIIGSIL-N 235 +A D GW + F + ++R R GR +S+ WGN+AGVI+G ++ N Sbjct: 175 GKAQNNDGFGWGP-----FIFFAFLIVMTMLRSRGGGRRGHSSDGWGNSAGVILGGMIGN 229 Query: 236 EAAR 239 E R Sbjct: 230 EIGR 233 >ref|YP_001352293.1| hypothetical protein mma_0603 [Janthinobacterium sp. Marseille] gb|ABR90641.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 274 Score = 239 bits (611), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 138/247 (55%), Positives = 168/247 (68%), Gaps = 19/247 (7%) Query: 1 MQRFPRLLA--FCLFILLTGSFRSAGAQDFVAVPALTSHVTDQAGMLDEQQRRTLDQVLT 58 M+ LLA LF +L AGAQ+ V VP L VTD AGML+ +QR TL+ VL Sbjct: 1 MKILRTLLACTLALFCVL------AGAQNLVPVPPLKERVTDLAGMLNAEQRTTLENVLA 54 Query: 59 DYETRTGSQIAVLLIASTAPEAIEQYGIRVADAWKLGRKGIDDGVILIVAKDNPKALRRL 118 +YETRTG+QIA+LL+ ST PE IEQY IRVADAWKLGRKG+DDGV+L+VAKDN A RL Sbjct: 55 EYETRTGNQIAILLLKSTEPEGIEQYSIRVADAWKLGRKGVDDGVLLLVAKDNSAASGRL 114 Query: 119 RIEAGRGVQGSLTDAQSKRILEDVIAPHFRQNDYYGGLAAGVSALTSLLDRENLPAAKK- 177 RIE GRGVQG LTDAQSKR+L+DVIAPHFRQ D+YGGLA+GVS +TSLLD+E P K Sbjct: 115 RIETGRGVQGVLTDAQSKRVLQDVIAPHFRQGDFYGGLASGVSVITSLLDKEAFPEPAKR 174 Query: 178 -EAAGQDDA-GWLEVAVLVIMLAVFFTALLLVRRR--SAGRNNLNSNTWGNAAGVIIGSI 233 +A+ QDDA W ++L R R R + ++ WGN+AGVI+G+ Sbjct: 175 GQASAQDDAFTWGPFIF-----FAILIFIMLARSRGGRGARAHSSNGDWGNSAGVILGTA 229 Query: 234 L-NEAAR 239 + NE R Sbjct: 230 IGNELGR 236