BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0054.p (396 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776771.1| periplasmic sensor signal transduction histi... 513 e-143 ref|ZP_08274424.1| hypothetical protein IMCC9480_2943 [Oxalobact... 423 e-116 ref|YP_004752190.1| ATP-binding protein [Collimonas fungivorans ... 340 4e-91 ref|YP_001354554.1| sensor histidine kinase transcription regula... 259 5e-67 ref|YP_283657.1| sensor histidine kinase [Dechloromonas aromatic... 256 5e-66 >ref|YP_003776771.1| periplasmic sensor signal transduction histidine kinase [Herbaspirillum seropedicae SmR1] gb|ADJ64863.1| periplasmic sensor signal transduction histidine kinase protein [Herbaspirillum seropedicae SmR1] Length = 459 Score = 513 bits (1321), Expect = e-143, Method: Compositional matrix adjust. Identities = 244/390 (62%), Positives = 308/390 (78%) Query: 4 KTSLELTKQAEQMLRSDHFDTMYFVVRDSNGETLAGDHNFPPVNHVTAPNEPVTYDGVMN 63 +T+ ELT+QAEQ+LRS+H DT +F VR++ G+ + GD FP + + P+ YDG M Sbjct: 64 RTTAELTQQAEQILRSNHSDTTFFAVRNTEGQIVVGDKGFPQLPASDVFDRPINYDGEMR 123 Query: 64 GEQVRIAVLYVSIERTPIYIGIAETFRKRNQTHYVILISLLLLDGALTFFSIAIVMIAVN 123 GE VRIA + V ++ I++ +AET RKR++ HY IL+S L+LDGALTF SI +V++AV Sbjct: 124 GEPVRIAAMQVRVKNGVIWVAVAETIRKRDRAHYTILLSFLVLDGALTFASIFVVLVAVR 183 Query: 124 KGLSPLRELRQNLDQRNHDNLTPIEFKETAEELSPVIGAINSLLENIRKGASAQQNFLAN 183 +GL PL+ L++NL+QR+H L I+ + EL P+I A+N L+ I KG AQQNF+A+ Sbjct: 184 RGLRPLKSLQRNLEQRDHGKLGAIDGRGAPVELQPLIVAMNELMARINKGEQAQQNFMAD 243 Query: 184 VAHQIRTPLTGLRLQLEWLHQRHADEPETAHSTELMTSSVERMVRQSNQLLALARAEPSR 243 VAHQ+RTPLTGL+LQLE LH +H D+P+TA S +M SSVERM+RQS QLLALAR+EP Sbjct: 244 VAHQLRTPLTGLKLQLELLHDKHQDQPDTARSLAMMNSSVERMIRQSRQLLALARSEPGL 303 Query: 244 FKPTHLEDLLLDKLVEESVQHFIEQADKKQIDLGFDLQPARMKGDRFMLRDLIDNLVDNA 303 F+ LE+L LDKLVEESVQHFIE+ADKK+IDLGFDL+PAR++GDRF+L DLIDNL+DNA Sbjct: 304 FESRKLEELSLDKLVEESVQHFIEEADKKRIDLGFDLRPARLRGDRFLLSDLIDNLIDNA 363 Query: 304 VRYSPPQSTVTVSCREQEDATLLTVEDSGPGIAPEHRELIFDRFYRVNDKIAGSGLGLAI 363 VRYSPP TVTV C E++DAT+L+VEDSGPGIAPEHRELIFDRFYR NDK+AGSGLGLAI Sbjct: 364 VRYSPPHGTVTVRCLEEQDATVLSVEDSGPGIAPEHRELIFDRFYRANDKVAGSGLGLAI 423 Query: 364 VRDIAKDHGGEITLTSGEANCGTIFTVRFP 393 VR+IA DHGG I++ E GTIFTVRFP Sbjct: 424 VREIAHDHGGVISVDCKEQGQGTIFTVRFP 453 >ref|ZP_08274424.1| hypothetical protein IMCC9480_2943 [Oxalobacteraceae bacterium IMCC9480] gb|EGF32108.1| hypothetical protein IMCC9480_2943 [Oxalobacteraceae bacterium IMCC9480] Length = 452 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 211/391 (53%), Positives = 277/391 (70%) Query: 3 GKTSLELTKQAEQMLRSDHFDTMYFVVRDSNGETLAGDHNFPPVNHVTAPNEPVTYDGVM 62 G ++L +QAEQ+LR DH D +YF+VRD G+ +AGD +FP + N+PV Y G M Sbjct: 60 GTILVDLPQQAEQVLRLDHVDEIYFIVRDQAGQVVAGDKDFPSLPAPQKLNDPVAYSGTM 119 Query: 63 NGEQVRIAVLYVSIERTPIYIGIAETFRKRNQTHYVILISLLLLDGALTFFSIAIVMIAV 122 GE +R+ VL + + I ++ET RKR+ I L +L+G LT SIA+V +AV Sbjct: 120 RGEAIRMIVLKARVGTQVVSISVSETLRKRSLIRTEIFAGLFVLEGLLTAISIALVWLAV 179 Query: 123 NKGLSPLRELRQNLDQRNHDNLTPIEFKETAEELSPVIGAINSLLENIRKGASAQQNFLA 182 +GL PL++++ +LD R+HD L P+ EL P++ AIN+LL ++ GA+AQQ FLA Sbjct: 180 TRGLLPLKKMQADLDARSHDTLAPVSDVHLPRELRPLVDAINTLLGKVQAGAAAQQAFLA 239 Query: 183 NVAHQIRTPLTGLRLQLEWLHQRHADEPETAHSTELMTSSVERMVRQSNQLLALARAEPS 242 NVAHQ+RTPL L++QLEWL QRH ETAHS LM ++ RM+R +NQLLALARAEPS Sbjct: 240 NVAHQLRTPLAALQMQLEWLQQRHPQGHETAHSATLMLTATARMIRHTNQLLALARAEPS 299 Query: 243 RFKPTHLEDLLLDKLVEESVQHFIEQADKKQIDLGFDLQPARMKGDRFMLRDLIDNLVDN 302 R + E++ L L+E++VQ F+EQA +KQIDLGFDLQPA ++ D F+LRDLIDNL+DN Sbjct: 300 RLEKDRFEEVDLCHLIEDAVQVFVEQAVRKQIDLGFDLQPAPLRADPFLLRDLIDNLIDN 359 Query: 303 AVRYSPPQSTVTVSCREQEDATLLTVEDSGPGIAPEHRELIFDRFYRVNDKIAGSGLGLA 362 A+RYSP STVTVSCR +E+A L VEDSGPGIA RELIF+RFYR+++ +AGSGLGLA Sbjct: 360 AIRYSPAGSTVTVSCRCEEEAVLFLVEDSGPGIAESRRELIFNRFYRLDESVAGSGLGLA 419 Query: 363 IVRDIAKDHGGEITLTSGEANCGTIFTVRFP 393 IVRDI H E+ L +G GT F+VRFP Sbjct: 420 IVRDIVLAHDAEMQLGAGPGGKGTTFSVRFP 450 >ref|YP_004752190.1| ATP-binding protein [Collimonas fungivorans Ter331] gb|AEK61367.1| ATP-binding region, ATPase-like:Histidine kinase [Collimonas fungivorans Ter331] Length = 349 Score = 340 bits (871), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 160/277 (57%), Positives = 213/277 (76%), Gaps = 1/277 (0%) Query: 117 IVMIAVNKGLSPLRELRQNLDQRNHDNLTPIEFKETAEELSPVIGAINSLLENIRKGASA 176 ++ +A+ +GL PL+++ +L+ R+ D+L+ ++ + ELSPV+ AIN LL+ +++ A A Sbjct: 62 VIWLALGRGLLPLKKMTADLEARSDDDLSALDQRHVPLELSPVVTAINRLLDKVQQDAKA 121 Query: 177 QQNFLANVAHQIRTPLTGLRLQLEWLHQRHADEPETAHSTELMTSSVERMVRQSNQLLAL 236 QQNFLAN+AHQ+RTPL G R QLEWL Q+HA EPE+AHS LMTSS ERM+RQ+NQLL L Sbjct: 122 QQNFLANMAHQLRTPLAGFRTQLEWLRQKHAGEPESAHSIALMTSSTERMIRQTNQLLTL 181 Query: 237 ARAEPSRFKPTHLEDLLLDKLVEESVQHFIEQADKKQIDLGFDLQPARMKGDRFMLRDLI 296 ARAEP++F+ L + L++LVEES+QHF+EQA +K IDLGF+LQP R+ GD F+LRDLI Sbjct: 182 ARAEPAKFEKERLRVVELNRLVEESIQHFVEQAHRKNIDLGFNLQPTRVMGDHFLLRDLI 241 Query: 297 DNLVDNAVRYSPPQSTVTVSCREQEDATLLTVEDSGPGIAPEHRELIFDRFYRVNDKIAG 356 DNL+DNA+RYSP VTVS +D + +VEDSGPGI P +ELIF+RF R++D +AG Sbjct: 242 DNLIDNAIRYSPQGGKVTVSSLHGKDGGIFSVEDSGPGIKPSEQELIFNRFRRLDDSVAG 301 Query: 357 SGLGLAIVRDIAKDHGGEITLTSGEANCGTIFTVRFP 393 +GLGLAIVRDIAKDHG I + A GT+F+V FP Sbjct: 302 NGLGLAIVRDIAKDHGARIMVEPATAG-GTVFSVLFP 337 >ref|YP_001354554.1| sensor histidine kinase transcription regulator protein [Janthinobacterium sp. Marseille] gb|ABR91339.1| sensor histidine kinase transcription regulator protein [Janthinobacterium sp. Marseille] Length = 544 Score = 259 bits (663), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 162/419 (38%), Positives = 238/419 (56%), Gaps = 30/419 (7%) Query: 1 VRGKTSLELTKQAEQMLRSDHFDTMYFVVRDSNGETLAGDHNFPPVNHVTAPNEPVT--- 57 V GK LT A +L +D D +Y+ VR+S G+ + GD P V AP T Sbjct: 118 VNGKVVTRLTGAATDILHADDIDNVYYQVRNSFGDVVEGDMEIPLPKDVEAPPPWSTQFR 177 Query: 58 YDGVMNGEQVRIAVLYV-----------SIERTPIYIGIAETFRKRNQTHYVILISLLLL 106 YD + N E VRIA +YV SIE + +AET KR+Q I+ +++ Sbjct: 178 YDFIRNTE-VRIAYIYVDLHKTQTAPQLSIEPRLALVQVAETLDKRSQLVNQIIKGVIVP 236 Query: 107 DGALTFFSIAIVMIAVNKGLSPLRELRQNLDQRNHDNLTPIEFKETAEELSPVIGAINSL 166 + + ++ +V A+ +GL PL EL+Q + +R D+L+PI+ EE+ P++G++N + Sbjct: 237 EFIILPIALVLVWFALTRGLRPLVELQQRIRERRPDDLSPIDSGYVPEEILPLVGSLNEM 296 Query: 167 LENIRKGASAQQNFLANVAHQIRTPLTGLRLQLEWLHQRHADEPETAHSTELMTSSVERM 226 LE + + Q+ F+A+ AHQ++TPL G+R+Q E L R D+ E S E + S + Sbjct: 297 LERLSQSIKVQKRFIADAAHQMKTPLAGMRMQSE-LALRQTDQVEIHKSLEQLAKSSKSA 355 Query: 227 VRQSNQLLALARAEPSRFKPTHLEDLLLDKLVEESVQHFIEQADKKQIDLGFDLQP---A 283 R NQLLALARAE L+ L L +L ++VQ +++ + K+IDLGF+ QP Sbjct: 356 TRMINQLLALARAENQTPTTRPLQPLELSELARDTVQEWVQTSFNKKIDLGFE-QPDYHI 414 Query: 284 RMKGDRFMLRDLIDNLVDNAVRYSPPQSTVTVSCREQEDATL--LTVEDSGPGIAPEHRE 341 + GD MLR+L++NL+DNA+ Y+P TV R E+A L L VED+GPGIAP + Sbjct: 415 MVNGDAIMLRELLNNLIDNALNYTPAGGHATVRVRADEEARLAYLEVEDTGPGIAPHEHK 474 Query: 342 LIFDRFYRV-NDKIAGSGLGLAIVRDIAKDHGGEITLTSGEANC------GTIFTVRFP 393 IF+RFYR+ + GSGLGLAIVR+IA+ HG EI + + NC G + + P Sbjct: 475 RIFERFYRILGSNVEGSGLGLAIVREIAQQHGAEIDILNN-PNCTNPKAPGCLMRITLP 532 >ref|YP_283657.1| sensor histidine kinase [Dechloromonas aromatica RCB] gb|AAZ45187.1| ATP-binding region, ATPase-like:Histidine kinase, HAMP region:Histidine kinase A, N-terminal [Dechloromonas aromatica RCB] Length = 501 Score = 256 bits (654), Expect = 5e-66, Method: Compositional matrix adjust. Identities = 152/402 (37%), Positives = 220/402 (54%), Gaps = 11/402 (2%) Query: 1 VRGKTSLELTKQAEQMLRSDHFDTMYFVVRDSNGETLAGDHNFP----PVNHVTAPNEPV 56 V GK L L A +LR+D D++YF V +G LAGD P P++ E Sbjct: 73 VNGKPQLSLPASARALLRADETDSVYFHVVTFDGRFLAGDKELPLSQLPLDDAMVSGEIY 132 Query: 57 TYDGVMNGEQVRIAVLYVSIERTP----IYIGIAETFRKRNQTHYVILISLLLLDGALTF 112 D G+ +R+A Y++ P + I + ET KR+Q I+ S++L + Sbjct: 133 QRDADFKGQDLRMAYTYLAEPNMPKSQWVVIEVGETTEKRSQLANKIVASVILPQFIIIP 192 Query: 113 FSIAIVMIAVNKGLSPLRELRQNLDQRNHDNLTPIEFKETAEELSPVIGAINSLLENIRK 172 ++ +V +++GL PL LRQ +D R D+L+PI + EEL P++ A N +LE +++ Sbjct: 193 LAVMLVWFGLSRGLRPLTRLRQTIDARQPDDLSPIATRRVPEELEPLVEAFNEMLERMKR 252 Query: 173 GASAQQNFLANVAHQIRTPLTGLRLQLEWLHQRHADEPETAHSTELMTSSVERMVRQSNQ 232 AQQ F+A+ AHQ+RTPLTGL+ Q + R D H+ + + V+R R NQ Sbjct: 253 SVEAQQRFVADAAHQLRTPLTGLKTQAQ-FAIRETDPEALRHALRQIATGVDRAGRLVNQ 311 Query: 233 LLALARAEPSRFKPTHLEDLLLDKLVEESVQHFIEQADKKQIDLGFDLQ-PARMKGDRFM 291 LL LAR E E L L LV E V+ ++ A +K IDLG++ + PA + G+ F+ Sbjct: 312 LLTLARTEGGELAQRRHEPLDLSLLVREVVEDWVTVAIEKDIDLGYESEGPAMISGNSFL 371 Query: 292 LRDLIDNLVDNAVRYSPPQSTVTVSCREQEDATLLTVEDSGPGIAPEHRELIFDRFYRVN 351 LR+L NL+DNA+RY+P VT D LL VED+G GI+ E +L+F+RFYRV+ Sbjct: 372 LRELAKNLIDNALRYTPAGGRVTCRVVVNPDTVLLEVEDNGVGISEEQADLVFERFYRVD 431 Query: 352 D-KIAGSGLGLAIVRDIAKDHGGEITLTSGEANCGTIFTVRF 392 D GSGLGLAIV++IA H +L G I + F Sbjct: 432 DASTEGSGLGLAIVQEIAMQHDSRASLRPNPLGKGAIARIAF 473