BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0047.p (287 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004753120.1| nitrate/sulfonate/bicarbonate ABC transporte... 477 e-133 ref|YP_003776776.1| nitrate/sulfonate/bicarbonate ABC transporte... 454 e-126 ref|YP_004231018.1| binding-protein-dependent transport systems ... 431 e-119 ref|YP_001860130.1| binding-protein-dependent transport systems ... 430 e-118 ref|ZP_02881852.1| binding-protein-dependent transport systems i... 430 e-118 >ref|YP_004753120.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Collimonas fungivorans Ter331] gb|AEK62297.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component [Collimonas fungivorans Ter331] Length = 284 Score = 477 bits (1228), Expect = e-133, Method: Compositional matrix adjust. Identities = 250/284 (88%), Positives = 267/284 (94%) Query: 4 MTQVNTSRAMSPEAIAEVEREAQRKIKQRYWLVISLRLAILVIILGGWELSATMQWIDPF 63 M QV T +S ++A VE+EAQRKIKQRYWLVISLR+AILV+ LGGWEL+A +QWIDPF Sbjct: 1 MNQVQTIDKLSAASLATVEQEAQRKIKQRYWLVISLRVAILVLTLGGWELAARLQWIDPF 60 Query: 64 FFSQPSLIVIQIYDWIMEGTSQGPLWVQVMVTLEETVLGFLIGSVAGIIAGIALGRNKLM 123 FFSQPSLIV+QIYDWI+EGTSQGPLW QV+VTLEETVLGFLIGSVAG+I GI LGRNKL+ Sbjct: 61 FFSQPSLIVVQIYDWIVEGTSQGPLWTQVLVTLEETVLGFLIGSVAGVICGILLGRNKLL 120 Query: 124 SDVFSLYIQIANSIPRVVLGSIFVIALGLGMASKVALAVVMVFFVVFGNAFQGVREADRY 183 SDVFS+YIQ+ANSIPRVVLGSIFVIALGLGMASKVALAVVMVFFVVFGNAFQGVREADRY Sbjct: 121 SDVFSIYIQVANSIPRVVLGSIFVIALGLGMASKVALAVVMVFFVVFGNAFQGVREADRY 180 Query: 184 MIANAQILGASRRQVTTAVVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGLLIS 243 MIANAQILGAS RQVT +VVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGLLIS Sbjct: 181 MIANAQILGASPRQVTMSVVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGLLIS 240 Query: 244 TAQGAFNASGVFAAMIVLAVVALLADYLLTSLEKRLLKWRPAAF 287 TAQGAFNASGVFAAMIVLAVVAL ADYLLT+LEKRLLKWRP AF Sbjct: 241 TAQGAFNASGVFAAMIVLAVVALAADYLLTTLEKRLLKWRPVAF 284 >ref|YP_003776776.1| nitrate/sulfonate/bicarbonate ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ64868.1| ABC-type nitrate/sulfonate/bicarbonate transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 284 Score = 454 bits (1169), Expect = e-126, Method: Compositional matrix adjust. Identities = 243/284 (85%), Positives = 259/284 (91%) Query: 4 MTQVNTSRAMSPEAIAEVEREAQRKIKQRYWLVISLRLAILVIILGGWELSATMQWIDPF 63 MTQ S++ + IA VE EAQRKI+ R LVI LR+AILVI+LGGWE+ A + WIDPF Sbjct: 1 MTQAQASQSAATMDIAAVEAEAQRKIRARKQLVIGLRIAILVIVLGGWEVCARIGWIDPF 60 Query: 64 FFSQPSLIVIQIYDWIMEGTSQGPLWVQVMVTLEETVLGFLIGSVAGIIAGIALGRNKLM 123 FFSQPSLIV QIYDW++EGTSQGPLW QV+VTLEETVLGFLIGSVAG+IAGI LGRNKL+ Sbjct: 61 FFSQPSLIVAQIYDWMVEGTSQGPLWTQVLVTLEETVLGFLIGSVAGVIAGIVLGRNKLL 120 Query: 124 SDVFSLYIQIANSIPRVVLGSIFVIALGLGMASKVALAVVMVFFVVFGNAFQGVREADRY 183 SDVFSLYIQIANSIPRVVLGSIFVIA GLGMASKVALAVVMVFFVVF NAFQGVREADRY Sbjct: 121 SDVFSLYIQIANSIPRVVLGSIFVIAFGLGMASKVALAVVMVFFVVFANAFQGVREADRY 180 Query: 184 MIANAQILGASRRQVTTAVVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGLLIS 243 MIANAQILGASRRQVT AVVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGLLIS Sbjct: 181 MIANAQILGASRRQVTMAVVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGLLIS 240 Query: 244 TAQGAFNASGVFAAMIVLAVVALLADYLLTSLEKRLLKWRPAAF 287 TAQGAFNASGVFAAMIVLAVVAL AD+LL +LE+RLLKWRP AF Sbjct: 241 TAQGAFNASGVFAAMIVLAVVALAADWLLHALERRLLKWRPQAF 284 >ref|YP_004231018.1| binding-protein-dependent transport systems inner membrane component [Burkholderia sp. CCGE1001] gb|ADX57958.1| binding-protein-dependent transport systems inner membrane component [Burkholderia sp. CCGE1001] Length = 287 Score = 431 bits (1109), Expect = e-119, Method: Compositional matrix adjust. Identities = 228/286 (79%), Positives = 254/286 (88%) Query: 1 VSNMTQVNTSRAMSPEAIAEVEREAQRKIKQRYWLVISLRLAILVIILGGWELSATMQWI 60 +S Q + P ++ +VER AQ++I+QR LVISLR+A+LV++LGGWEL+A ++WI Sbjct: 1 MSTTPQQTMPAGLDPASLEQVERAAQKRIRQRQLLVISLRIAVLVVVLGGWELAARLKWI 60 Query: 61 DPFFFSQPSLIVIQIYDWIMEGTSQGPLWVQVMVTLEETVLGFLIGSVAGIIAGIALGRN 120 DPFFFS PS I QI +W + GTSQGPL QV VTLEET LGF+IGSVAG+ GI LGRN Sbjct: 61 DPFFFSMPSAIFDQIVEWFVNGTSQGPLLTQVWVTLEETGLGFIIGSVAGVFCGIVLGRN 120 Query: 121 KLMSDVFSLYIQIANSIPRVVLGSIFVIALGLGMASKVALAVVMVFFVVFGNAFQGVREA 180 KL+SDVFSLYI+IANSIPRVVLGS+FVIALGLGMASKVALAVVMVFFVVF NAFQGVREA Sbjct: 121 KLLSDVFSLYIKIANSIPRVVLGSVFVIALGLGMASKVALAVVMVFFVVFANAFQGVREA 180 Query: 181 DRYMIANAQILGASRRQVTTAVVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGL 240 DRYMIANAQILGASRRQVTT+VVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGL Sbjct: 181 DRYMIANAQILGASRRQVTTSVVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGL 240 Query: 241 LISTAQGAFNASGVFAAMIVLAVVALLADYLLTSLEKRLLKWRPAA 286 LISTAQGAFNASGVFAAMIVLAVVAL ADYLLT++E+RLLKWRPAA Sbjct: 241 LISTAQGAFNASGVFAAMIVLAVVALAADYLLTAVEQRLLKWRPAA 286 >ref|YP_001860130.1| binding-protein-dependent transport systems inner membrane component [Burkholderia phymatum STM815] gb|ACC73084.1| binding-protein-dependent transport systems inner membrane component [Burkholderia phymatum STM815] Length = 287 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 229/284 (80%), Positives = 253/284 (89%) Query: 1 VSNMTQVNTSRAMSPEAIAEVEREAQRKIKQRYWLVISLRLAILVIILGGWELSATMQWI 60 +S Q + P ++A+VER AQ++I+QR LVI LR+A+LV++LGGWE+SA M+WI Sbjct: 1 MSTTPQQMMPAGLDPTSLAQVERIAQKRIRQRNALVIGLRIAVLVLVLGGWEISARMKWI 60 Query: 61 DPFFFSQPSLIVIQIYDWIMEGTSQGPLWVQVMVTLEETVLGFLIGSVAGIIAGIALGRN 120 DPFFFS PSLI QI DW + GTSQGPL QV VTLEET LGF+IGSVAG+ GI LGRN Sbjct: 61 DPFFFSMPSLIFEQIVDWFVNGTSQGPLLTQVWVTLEETGLGFIIGSVAGVFCGIVLGRN 120 Query: 121 KLMSDVFSLYIQIANSIPRVVLGSIFVIALGLGMASKVALAVVMVFFVVFGNAFQGVREA 180 KL+SDVFSLYI+IANSIPRVVLGS+FVIALGLGMASKVALAVVMVFFVVF NAFQGVREA Sbjct: 121 KLLSDVFSLYIKIANSIPRVVLGSVFVIALGLGMASKVALAVVMVFFVVFANAFQGVREA 180 Query: 181 DRYMIANAQILGASRRQVTTAVVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGL 240 DRYMIANAQILGASRRQVTT+VVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGL Sbjct: 181 DRYMIANAQILGASRRQVTTSVVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGL 240 Query: 241 LISTAQGAFNASGVFAAMIVLAVVALLADYLLTSLEKRLLKWRP 284 LISTAQGAFNASGVFAAMIVLAVVAL ADYLLT++E+RLLKWRP Sbjct: 241 LISTAQGAFNASGVFAAMIVLAVVALAADYLLTAVEQRLLKWRP 284 >ref|ZP_02881852.1| binding-protein-dependent transport systems inner membrane component [Burkholderia graminis C4D1M] gb|EDT12097.1| binding-protein-dependent transport systems inner membrane component [Burkholderia graminis C4D1M] Length = 287 Score = 430 bits (1106), Expect = e-118, Method: Compositional matrix adjust. Identities = 230/286 (80%), Positives = 252/286 (88%) Query: 1 VSNMTQVNTSRAMSPEAIAEVEREAQRKIKQRYWLVISLRLAILVIILGGWELSATMQWI 60 +S Q + ++ VER AQ++I+QR LVISLR+A+LV++LGGWELSA ++WI Sbjct: 1 MSTTPQQTMPTGIDTASLEHVERVAQKRIRQRQLLVISLRIAVLVVVLGGWELSARLKWI 60 Query: 61 DPFFFSQPSLIVIQIYDWIMEGTSQGPLWVQVMVTLEETVLGFLIGSVAGIIAGIALGRN 120 DPFFFS PS I QI DW + GTSQGPL QV VTLEET LGF+IGSVAGI GI LGRN Sbjct: 61 DPFFFSMPSAIFDQIVDWFVNGTSQGPLLTQVWVTLEETGLGFIIGSVAGIFCGIVLGRN 120 Query: 121 KLMSDVFSLYIQIANSIPRVVLGSIFVIALGLGMASKVALAVVMVFFVVFGNAFQGVREA 180 KL+SDVFSLYI+IANSIPRVVLGS+FVIALGLGMASKVALAVVMVFFVVF NAFQGVREA Sbjct: 121 KLLSDVFSLYIKIANSIPRVVLGSVFVIALGLGMASKVALAVVMVFFVVFANAFQGVREA 180 Query: 181 DRYMIANAQILGASRRQVTTAVVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGL 240 DRYMIANAQILGASRRQVTT+VVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGL Sbjct: 181 DRYMIANAQILGASRRQVTTSVVIPSALSWILASLHVSFGFALVGAVVGEFLGSKQGIGL 240 Query: 241 LISTAQGAFNASGVFAAMIVLAVVALLADYLLTSLEKRLLKWRPAA 286 LISTAQGAFNASGVFAAMIVLAVVAL ADYLLT++E+RLLKWRPAA Sbjct: 241 LISTAQGAFNASGVFAAMIVLAVVALAADYLLTAVEQRLLKWRPAA 286