BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0044.p         (107 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003776778.1| nitrate/sulfonate/bicarbonate ABC transporte...   198   2e-49
ref|YP_004753122.1| nitrate/sulfonate/bicarbonate ABC transporte...   189   2e-46
ref|YP_003776779.1| nitrate/sulfonate/bicarbonate ABC transporte...   174   3e-42
ref|YP_001887794.1| NMT1/THI5 like domain-containing protein [Bu...   164   6e-39
ref|YP_001887791.1| ABC nitrate/sulfonate/bicarbonate family tra...   163   7e-39

>ref|YP_003776778.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein
           [Herbaspirillum seropedicae SmR1]
 gb|ADJ64870.1| ABC-type nitrate/sulfonate/bicarbonate transport systems,
           periplasmic component protein [Herbaspirillum
           seropedicae SmR1]
          Length = 337

 Score =  198 bits (504), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 89/107 (83%), Positives = 100/107 (93%)

Query: 1   VQRNWLNGHKDDAAKLARAFVKTLKFIKTHSAAEIADKMPKDYYGNNKPLYIQALENSLP 60
           VQR+WLN HK+DA KLARAFVKTL+FI+TH+A +IADKMPKDYYGNNKPLYIQAL NSLP
Sbjct: 231 VQRSWLNSHKEDAQKLARAFVKTLRFIQTHTAEQIADKMPKDYYGNNKPLYIQALTNSLP 290

Query: 61  MYSADGKMPAGGPETVLSVLAGFNPNVKGKHIDLSKTYTNEFVNLVK 107
           MYS DGKMP GGP+TVL+VL+GFNPNVKGKH+DLSKTYT+EFVN VK
Sbjct: 291 MYSQDGKMPKGGPQTVLAVLSGFNPNVKGKHVDLSKTYTDEFVNAVK 337


>ref|YP_004753122.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic proteins
           [Collimonas fungivorans Ter331]
 gb|AEK62299.1| ABC-type nitrate/sulfonate/bicarbonate transport systems,
           periplasmic components [Collimonas fungivorans Ter331]
          Length = 356

 Score =  189 bits (479), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 87/107 (81%), Positives = 95/107 (88%)

Query: 1   VQRNWLNGHKDDAAKLARAFVKTLKFIKTHSAAEIADKMPKDYYGNNKPLYIQALENSLP 60
           VQ  WL  HK +A KLA AFVKTLKFI THSAAEIADKMPKDYYGNNKP+Y+QAL+NSLP
Sbjct: 250 VQGPWLKAHKAEATKLAHAFVKTLKFINTHSAAEIADKMPKDYYGNNKPMYVQALQNSLP 309

Query: 61  MYSADGKMPAGGPETVLSVLAGFNPNVKGKHIDLSKTYTNEFVNLVK 107
           M+SADGKMP GGPETVL VL+GFNPNVKGKHIDL+KTYTNEFV+  K
Sbjct: 310 MFSADGKMPPGGPETVLQVLSGFNPNVKGKHIDLAKTYTNEFVSQAK 356


>ref|YP_003776779.1| nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein
           [Herbaspirillum seropedicae SmR1]
 gb|ADJ64871.1| ABC-type nitrate/sulfonate/bicarbonate transport system,
           periplasmic component protein [Herbaspirillum
           seropedicae SmR1]
          Length = 353

 Score =  174 bits (442), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 78/107 (72%), Positives = 94/107 (87%)

Query: 1   VQRNWLNGHKDDAAKLARAFVKTLKFIKTHSAAEIADKMPKDYYGNNKPLYIQALENSLP 60
           V R+W+N HK ++ KLAR FVKTL++I+THSA +IADKMPKDYYG +K +Y+QAL+ SLP
Sbjct: 247 VHRSWMNSHKAESQKLARVFVKTLRYIQTHSAEDIADKMPKDYYGGSKAIYVQALKASLP 306

Query: 61  MYSADGKMPAGGPETVLSVLAGFNPNVKGKHIDLSKTYTNEFVNLVK 107
           MYS DGKMPAGGPE VL V+AGFNPN+KGK+IDLSKTYTNEFV+ VK
Sbjct: 307 MYSPDGKMPAGGPEQVLKVMAGFNPNIKGKNIDLSKTYTNEFVDQVK 353


>ref|YP_001887794.1| NMT1/THI5 like domain-containing protein [Burkholderia phytofirmans
           PsJN]
 gb|ACD18424.1| NMT1/THI5 like domain protein [Burkholderia phytofirmans PsJN]
          Length = 356

 Score =  164 bits (414), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 74/107 (69%), Positives = 91/107 (85%)

Query: 1   VQRNWLNGHKDDAAKLARAFVKTLKFIKTHSAAEIADKMPKDYYGNNKPLYIQALENSLP 60
           VQ  WL+ H  +AAKLARA VKTL+++ THSA EIA +MPKDY GN++ LY+ AL+ SLP
Sbjct: 249 VQSAWLDTHPQEAAKLARALVKTLRYLNTHSAEEIAAQMPKDYIGNDEALYVSALKASLP 308

Query: 61  MYSADGKMPAGGPETVLSVLAGFNPNVKGKHIDLSKTYTNEFVNLVK 107
           M++ADGKMPA GPETVL VLAGFNP+VKG+HIDLS+T+TN+FVN VK
Sbjct: 309 MFTADGKMPADGPETVLKVLAGFNPSVKGRHIDLSRTFTNQFVNEVK 355


>ref|YP_001887791.1| ABC nitrate/sulfonate/bicarbonate family transporter periplasmic
           ligand binding protein [Burkholderia phytofirmans PsJN]
 gb|ACD18421.1| ABC nitrate/sulfonate/bicarbonate family transporter, periplasmic
           ligand binding protein [Burkholderia phytofirmans PsJN]
          Length = 339

 Score =  163 bits (413), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 75/104 (72%), Positives = 87/104 (83%)

Query: 1   VQRNWLNGHKDDAAKLARAFVKTLKFIKTHSAAEIADKMPKDYYGNNKPLYIQALENSLP 60
           VQR W   HKDDAAKL+ AF KTL FI THSA EIA KMPKDYYGNNK LY+ AL+ SLP
Sbjct: 228 VQRAWAESHKDDAAKLSHAFAKTLNFIATHSAEEIAAKMPKDYYGNNKDLYVGALKASLP 287

Query: 61  MYSADGKMPAGGPETVLSVLAGFNPNVKGKHIDLSKTYTNEFVN 104
           M++ DGKMPA GP+TVL VL+ FNP+VKGKHIDL+KTYTN++V+
Sbjct: 288 MFTKDGKMPADGPDTVLKVLSAFNPSVKGKHIDLAKTYTNDYVS 331