BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0039.p (465 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776781.1| transmembrane sensor kinase transcription re... 632 e-179 ref|YP_004753124.1| histidine kinase [Collimonas fungivorans Ter... 551 e-155 ref|YP_001860126.1| histidine kinase [Burkholderia phymatum STM8... 410 e-112 ref|ZP_03266743.1| histidine kinase [Burkholderia sp. H160] >gi|... 396 e-108 ref|YP_554800.1| histidine kinase [Burkholderia xenovorans LB400... 392 e-107 >ref|YP_003776781.1| transmembrane sensor kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64873.1| transmembrane sensor kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 459 Score = 632 bits (1630), Expect = e-179, Method: Compositional matrix adjust. Identities = 312/443 (70%), Positives = 371/443 (83%), Gaps = 1/443 (0%) Query: 15 IPLTVYVGVSASFTRDSAVTSADLVQDRALLASARMMAGQVTWEDGAPVVNVPPAALEMF 74 IP+ VYVG+S S D+AV+SA LVQDRALLASARM+AGQV W DGAPVV+VPPAALE+F Sbjct: 15 IPMAVYVGLSTSDAYDNAVSSATLVQDRALLASARMIAGQVGWNDGAPVVSVPPAALELF 74 Query: 75 ASPDHDEVYYQVLMDDNTLLAGRPDFPVDVDFSLIAPAYATTYFNNQPLRVVSYVRALYD 134 ASP D VYYQVLMDD+TLLAGRPDFP DF+ + P Y+TT FN +PLRVVSY+RAL+D Sbjct: 75 ASPAQDAVYYQVLMDDDTLLAGRPDFPAAPDFAALYPVYSTTSFNGKPLRVVSYIRALFD 134 Query: 135 NGTLRMVAVSVGQTMRGHAQLLDELWRPALHRQIIMLLLAIALVVVGLTIELRPILRVKD 194 GTLRMVAVSVGQTM+G +++D+ W +L RQI++LLLAI+LVV+GLT+ELRP+L +KD Sbjct: 135 EGTLRMVAVSVGQTMQGRQEMIDDQWHASLRRQIVLLLLAISLVVLGLTMELRPLLALKD 194 Query: 195 ELATREPNSLTPLRAGELQVELRPIVVAINQYIQRLNTQVAVQKRFIADAAHQLRTPLTL 254 ELATR P+SLTPLRAG LQ ELRPIV AINQYI RLN QV VQKRF+ADAAHQLRTPL + Sbjct: 195 ELATRRPDSLTPLRAGGLQQELRPIVEAINQYIFRLNAQVTVQKRFVADAAHQLRTPLAV 254 Query: 255 IDSQIQFARQLNDPQRLPQVLQALQDSSRNMTDLTNKLLQLSQAEASNSTAFPRQPIELV 314 IDSQIQFARQL+DP R+ QVL +LQ+ SR+MTDLTNKLL LSQAEAS+S+AFPR P++L+ Sbjct: 255 IDSQIQFARQLDDPARVAQVLASLQEGSRSMTDLTNKLLLLSQAEASDSSAFPRAPVDLL 314 Query: 315 GLAATVLEELVSLAQRKHIDLGMETAVDEAWAMGSQALFSGMLMNLIDNALRYTPEHGKV 374 ++A VLEEL LA +K IDLG+ET ++ A G++A GMLMNLIDNALRYTPE GKV Sbjct: 315 AVSAMVLEELSGLALKKGIDLGLETTLESAMVNGNEAQLMGMLMNLIDNALRYTPEGGKV 374 Query: 375 TVGVALEDNKEVVITVADNGPGIPAEVRERVFERFYRNAAPDQHGAGLGMAIVKEIVQAA 434 TVG+ + +++ITV+DNGPGIPAEVRERVFERFYRNAAPDQ G+GLG+AIV+EIVQA+ Sbjct: 375 TVGLE-KKRSQMIITVSDNGPGIPAEVRERVFERFYRNAAPDQPGSGLGLAIVREIVQAS 433 Query: 435 QGTITLGTDRDGKGLTVTVRLPA 457 QG+I L G GL TV LPA Sbjct: 434 QGSIRLDAPAQGSGLVATVSLPA 456 >ref|YP_004753124.1| histidine kinase [Collimonas fungivorans Ter331] gb|AEK62301.1| histidine kinase [Collimonas fungivorans Ter331] Length = 469 Score = 551 bits (1420), Expect = e-155, Method: Compositional matrix adjust. Identities = 292/468 (62%), Positives = 373/468 (79%), Gaps = 4/468 (0%) Query: 1 MIVSLRLRLLLWLLIPLTVYVGVSASFTRDSAVTSADLVQDRALLASARMMAGQVTWEDG 60 MI+SLRLRLLLWLLIPL V+V +SA+ + SA +ADL+QD ALLASA+++AG++ W DG Sbjct: 1 MIISLRLRLLLWLLIPLAVFVAISATLSYRSARQTADLIQDHALLASAQVIAGEIHWLDG 60 Query: 61 APVVNVPPAALEMFASPDHDEVYYQVLMDDNTLLAGRPDFPVDVDFSLIAPAYATTYFNN 120 P +VPPAALE+ S D+VYYQV+ D+++LLAGRPDFP + F L PA++T ++ Sbjct: 61 VPHASVPPAALELLVSSMQDQVYYQVITDNDSLLAGRPDFPQALRFPLSTPAFSTIDYHG 120 Query: 121 QPLRVVSYVRALYDNGTLRMVAVSVGQTMRGHAQLLDELWRPALHRQIIMLLLAIALVVV 180 Q LRVVS VR LY+ G LR +AV VGQT Q+L +LWRP+LHRQI MLLLA ALVV+ Sbjct: 121 QVLRVVSQVRTLYNAGQLRKIAVLVGQTTGARDQMLADLWRPSLHRQIAMLLLAAALVVI 180 Query: 181 GLTIELRPILRVKDELATREPNSLTPLRAGELQVELRPIVVAINQYIQRLNTQVAVQKRF 240 GL++ELRP++ +K++LA R+ SL+P++AG+LQ+ELRPIV AINQ IQRLNTQV+ QKRF Sbjct: 181 GLSMELRPLMHLKNQLAARDATSLSPIKAGQLQLELRPIVEAINQTIQRLNTQVSAQKRF 240 Query: 241 IADAAHQLRTPLTLIDSQIQFARQLNDPQR---LPQVLQALQDSSRNMTDLTNKLLQLSQ 297 IADAAHQLRTPLTL+DSQIQFAR+L D R + QVLQA+ +SS NMT+LTNKLL LSQ Sbjct: 241 IADAAHQLRTPLTLLDSQIQFARRLGDENRRTEVLQVLQAMHESSSNMTELTNKLLLLSQ 300 Query: 298 AEASNSTAFPRQPIELVGLAATVLEELVSLAQRKHIDLGMETAVDEAWAMGSQALFSGML 357 AEAS++TAF RQP++L+ ++A VLEE+V LAQRK+IDLG+ET + AW MG++ALFS M+ Sbjct: 301 AEASDTTAFLRQPVDLLAVSAAVLEEIVDLAQRKNIDLGLETTMQHAWVMGNEALFSAMM 360 Query: 358 MNLIDNALRYTPEHGKVTVGVALEDNKEVVITVADNGPGIPAEVRERVFERFYRNAAPDQ 417 MNL+DNA+RYTP G VTV + + +V I+V+DNGPGIPAEVR+RVFERF+RNAAP Q Sbjct: 361 MNLVDNAIRYTPIDGTVTVAIG-ASHGQVEISVSDNGPGIPAEVRDRVFERFFRNAAPGQ 419 Query: 418 HGAGLGMAIVKEIVQAAQGTITLGTDRDGKGLTVTVRLPAASGAGNAQ 465 G GLG+AIVKEIV AAQG++TLG +GL V ++LP+ + G Q Sbjct: 420 DGTGLGLAIVKEIVMAAQGSVTLGAGEQQRGLAVLLQLPSCAAPGPEQ 467 >ref|YP_001860126.1| histidine kinase [Burkholderia phymatum STM815] gb|ACC73080.1| histidine kinase [Burkholderia phymatum STM815] Length = 466 Score = 410 bits (1054), Expect = e-112, Method: Compositional matrix adjust. Identities = 235/452 (51%), Positives = 304/452 (67%), Gaps = 23/452 (5%) Query: 15 IPLTVYVGVSASFTRDSAVTSADLVQDRALLASARMMAGQVTWEDGAPVVNVPPAALEMF 74 +PL +YV V+ D+A +ADLVQD LL+SARM+AG+V W DG V++PPAALE+F Sbjct: 15 VPLAIYVFVTGKAEYDNARRTADLVQDNTLLSSARMIAGEVEWADGTLRVDIPPAALEIF 74 Query: 75 ASPDHDEVYYQVLMDDNTLLAGRPDFPVDVDFSLIAPAYAT------TYFN----NQPLR 124 ASP D+V+Y V +DD+ LLAG PDFP IAPA A+ TY++ +R Sbjct: 75 ASPYGDQVFYNVSVDDDRLLAGVPDFPS------IAPAMASATHDTPTYYDADLHGASIR 128 Query: 125 VVSYVRALYDNGTLRMVAVSVGQTMRGHAQLLDELWRPALHRQIIMLLLAIALVVVGLTI 184 + YVR +YDNG R V VSVG+T ++ ELWRP L RQ M+LLA+AL +GLT Sbjct: 129 AIGYVRRMYDNGATRRVLVSVGKTQASRDAMVRELWRPQLVRQFEMMLLAVALACIGLTF 188 Query: 185 ELRPILRVKDELATREPNSLTPLRAGELQVELRPIVVAINQYIQRLNTQVAVQKRFIADA 244 ELRP+L+VKDE+ R+P L PLR L ELRPIV AINQ I RL QVA Q+RFIADA Sbjct: 189 ELRPLLKVKDEVMDRDPMQLEPLRVDRLHTELRPIVDAINQCIARLGVQVAAQRRFIADA 248 Query: 245 AHQLRTPLTLIDSQIQFARQLNDPQ-RLPQVLQALQDSSRNMTDLTNKLLQLSQAEASNS 303 AHQLRTPLTL+D+Q+Q+ARQ + + L + L A+Q S+R+M LTNKLL L+QAEA++ Sbjct: 249 AHQLRTPLTLLDTQLQYARQHRELEPSLGEALAAMQRSNRSMVGLTNKLLLLAQAEAADY 308 Query: 304 TAFPRQPIELVGLAATVLEELVSLAQRKHIDLGMETAVDE-AWAMGSQALFSGMLMNLID 362 T QP++L +A +V+E+L AQ + IDLG E +DE AW +G + L + ++ NL + Sbjct: 309 TQLANQPVDLASIAKSVVEDLALFAQNRDIDLGAE--LDESAWVIGHEGLLTALVSNLAE 366 Query: 363 NALRYTPEHGKVTVGVALEDNKEVVITVADNGPGIPAEVRERVFERFYRNAAPDQHGAGL 422 NA+RYT G VTV V V + V D+GPGIPAE R RVFE FYR A+ D G GL Sbjct: 367 NAIRYTQRGGHVTVAVR-GGAVTVALNVTDDGPGIPAEARSRVFEPFYR-ASADTEGTGL 424 Query: 423 GMAIVKEIVQAAQGTITLGT-DRDGKGLTVTV 453 G+AI +EIVQA +G I L T + + +GLTV V Sbjct: 425 GLAIAREIVQAHRGEIALATGEGEARGLTVKV 456 >ref|ZP_03266743.1| histidine kinase [Burkholderia sp. H160] gb|EEA01649.1| histidine kinase [Burkholderia sp. H160] Length = 459 Score = 396 bits (1018), Expect = e-108, Method: Compositional matrix adjust. Identities = 229/449 (51%), Positives = 296/449 (65%), Gaps = 10/449 (2%) Query: 15 IPLTVYVGVSASFTRDSAVTSADLVQDRALLASARMMAGQVTWEDGAPVVNVPPAALEMF 74 +PL +YV V+ + D+A +A+LVQD L+ASARM+AGQV W DG V+VPPAALE+F Sbjct: 15 VPLALYVFVTGTTEYDNARRTANLVQDNQLVASARMIAGQVEWRDGFLQVDVPPAALEIF 74 Query: 75 ASPDHDEVYYQVLMDDNTLLAGRPDFPVDVDFSLIAPAYATTY---FNNQPLRVVSYVRA 131 ASP D+V+Y V DD LLAG PDFP + AP +Y + P+R V VR Sbjct: 75 ASPYRDQVFYSVRTDDGRLLAGTPDFPAR---PVPAPDVPDSYDMELHGHPVRAVDIVRL 131 Query: 132 LYDNGTLRMVAVSVGQTMRGHAQLLDELWRPALHRQIIMLLLAIALVVVGLTIELRPILR 191 +YDNG R V V+VG+T+R + +LWRP L RQ+ M+ LA+ALV +GLT ELRP+++ Sbjct: 132 MYDNGATRPVRVTVGKTVRSRDAMTQQLWRPQLVRQLEMIALAVALVCIGLTFELRPLMK 191 Query: 192 VKDELATREPNSLTPLRAGELQVELRPIVVAINQYIQRLNTQVAVQKRFIADAAHQLRTP 251 VKDE+A R+P L P+R L ELRPIV AINQ I RL QVA Q+RFIADAAHQLRTP Sbjct: 192 VKDEVADRDPMQLEPIRVERLHSELRPIVDAINQCIARLGLQVAAQRRFIADAAHQLRTP 251 Query: 252 LTLIDSQIQFARQLNDPQ-RLPQVLQALQDSSRNMTDLTNKLLQLSQAEASNSTAFPRQP 310 LTL+ +Q+QFARQ D L + L A+ S+R+M LTNKLL L+QAEA++++ + Sbjct: 252 LTLLGTQLQFARQQEDLNPALDEALAAMHRSNRSMVGLTNKLLLLAQAEAADNSQLAMES 311 Query: 311 IELVGLAATVLEELVSLAQRKHIDLGMETAVDEAWAMGSQALFSGMLMNLIDNALRYTPE 370 ++LV LA V+E+L LAQ + IDLG E A +G + L ++ NL +NA+RYT Sbjct: 312 VDLVPLAMEVVEDLALLAQAREIDLGAELH-GVAPVLGHRGLLQALIANLAENAIRYTGS 370 Query: 371 HGKVTVGVALEDNKEVVITVADNGPGIPAEVRERVFERFYRNAAPDQHGAGLGMAIVKEI 430 G VTV V+ N V ++V DNGPGIPAE R RVFE FYR A+ D G GLG+AIV+EI Sbjct: 371 GGHVTVAVSATANT-VTVSVIDNGPGIPAESRSRVFEPFYR-ASTDTEGTGLGLAIVREI 428 Query: 431 VQAAQGTITLGTDRDGKGLTVTVRLPAAS 459 A G I L GKG+ + V P A+ Sbjct: 429 ADAHHGEIALKAGEGGKGVDIAVTFPRAT 457 >ref|YP_554800.1| histidine kinase [Burkholderia xenovorans LB400] gb|ABE35450.1| histidine kinase [Burkholderia xenovorans LB400] Length = 464 Score = 392 bits (1007), Expect = e-107, Method: Compositional matrix adjust. Identities = 224/444 (50%), Positives = 295/444 (66%), Gaps = 6/444 (1%) Query: 15 IPLTVYVGVSASFTRDSAVTSADLVQDRALLASARMMAGQVTWEDGAPVVNVPPAALEMF 74 +PL +YV V+ D+A +ADLVQD L++SARM+AG+V W DG V+VPPAALE+F Sbjct: 15 VPLALYVFVTGKAEYDNARRTADLVQDNQLISSARMIAGEVEWVDGFLRVDVPPAALEVF 74 Query: 75 ASPDHDEVYYQVLMDDNTLLAGRPDFPVDVDFSLIAPAYATTYFNNQPLRVVSYVRALYD 134 SP D+V+Y V +DD LLAG PDFPV + P + T+ +R V VR +YD Sbjct: 75 VSPYRDQVFYSVSVDDGRLLAGTPDFPVRPVQAPDTPDHYDTHLQGHSVRAVGLVRLMYD 134 Query: 135 NGTLRMVAVSVGQTMRGHAQLLDELWRPALHRQIIMLLLAIALVVVGLTIELRPILRVKD 194 NG R V V+VG+T+R + +LW+P L RQI M++LA+ALV +GLT ELRP+++VK+ Sbjct: 135 NGATRRVRVTVGKTVRSRDAMAQQLWQPQLVRQIEMIVLAVALVCIGLTFELRPLMKVKE 194 Query: 195 ELATREPNSLTPLRAGELQVELRPIVVAINQYIQRLNTQVAVQKRFIADAAHQLRTPLTL 254 ++A R+P L P+R L ELRPIV AINQ I RL QVA Q+RFIADAAHQLRTPLTL Sbjct: 195 DVADRDPMQLEPIRVERLHTELRPIVEAINQCISRLGVQVAAQRRFIADAAHQLRTPLTL 254 Query: 255 IDSQIQFARQLN--DPQRLPQVLQALQDSSRNMTDLTNKLLQLSQAEASNSTAFPRQPIE 312 + +Q+QFARQ + +P L + L A+ S+R+M LTNKLL L+QAEA+++T + ++ Sbjct: 255 LGTQLQFARQQDGLNPA-LDEALAAMHRSNRSMVGLTNKLLLLAQAEAADTTQLAVETVD 313 Query: 313 LVGLAATVLEELVSLAQRKHIDLGMETAVDEAWAMGSQALFSGMLMNLIDNALRYTPEHG 372 LV LA V+E+L LAQ + IDLG E A G + L ++ NL +NA+RYT G Sbjct: 314 LVPLALEVVEDLALLAQARDIDLGAELN-GPAPVAGHRGLLQALIANLAENAIRYTSSGG 372 Query: 373 KVTVGVALEDNKEVVITVADNGPGIPAEVRERVFERFYRNAAPDQHGAGLGMAIVKEIVQ 432 VTVGV D V + V D+GPGIPAE R RVFE F+R A+ D G GLG+AIV+EI Sbjct: 373 HVTVGVD-GDGDTVTVCVLDDGPGIPAESRSRVFEPFFR-ASTDTEGTGLGLAIVREIAD 430 Query: 433 AAQGTITLGTDRDGKGLTVTVRLP 456 A G ITL GKG+ ++V P Sbjct: 431 AHHGEITLKPGAGGKGVHISVSFP 454