BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0037.p (211 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776803.1| DNA polymerase III subunit epsilon [Herbaspi... 318 3e-85 ref|YP_001100571.1| DNA polymerase III subunit epsilon [Herminii... 318 3e-85 ref|YP_001352902.1| DNA polymerase III epsilon subunit [Janthino... 314 5e-84 ref|YP_001119082.1| DNA polymerase III subunit epsilon [Burkhold... 308 3e-82 ref|ZP_02463088.1| DNA polymerase III subunit epsilon [Burkholde... 306 1e-81 >ref|YP_003776803.1| DNA polymerase III subunit epsilon [Herbaspirillum seropedicae SmR1] gb|ADJ64895.1| DNA polymerase III, epsilon subunit, protein [Herbaspirillum seropedicae SmR1] Length = 244 Score = 318 bits (816), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 151/184 (82%), Positives = 164/184 (89%) Query: 1 MRQIVLDTETTGLNPRTGDRVIEIGCVELLNRQLTGNNLHFYINPERDSEEGALAVHGLT 60 MRQI+LDTETTGL+PR G+R++EIGCVE+LNRQL+G NLHFYINPERDSEEGALAVHGLT Sbjct: 1 MRQIILDTETTGLSPRNGNRILEIGCVEVLNRQLSGKNLHFYINPERDSEEGALAVHGLT 60 Query: 61 TEFLSDKPKFAAIVDEFRDYVRDAEIIIHNAPFDVGFLDAEFKLLGLPPFKEHVDNVIDS 120 TEFL+DKP F I EF DYVR A+IIIHNAPFDVGFLDAE LLGLPPFK+HV +V+DS Sbjct: 61 TEFLADKPTFKQIAAEFLDYVRGAQIIIHNAPFDVGFLDAELALLGLPPFKDHVIDVVDS 120 Query: 121 LQMAKEQHPGRRNSLDALCDRYGISNAHRTLHGGLLDAALLAEVYLAMTRGQNSLTMDLA 180 LQMAKE HPGRRNSLDALCDRYGISNAHR LHG LLDA LLAEVYL+MTRGQNSLTMDL Sbjct: 121 LQMAKELHPGRRNSLDALCDRYGISNAHRVLHGALLDAELLAEVYLSMTRGQNSLTMDLG 180 Query: 181 GGGD 184 D Sbjct: 181 AEED 184 >ref|YP_001100571.1| DNA polymerase III subunit epsilon [Herminiimonas arsenicoxydans] emb|CAL62449.1| DNA polymerase III subunit epsilon [Herminiimonas arsenicoxydans] Length = 234 Score = 318 bits (815), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 151/188 (80%), Positives = 169/188 (89%), Gaps = 1/188 (0%) Query: 1 MRQIVLDTETTGLNPRTGDRVIEIGCVELLNRQLTGNNLHFYINPERDSEEGALAVHGLT 60 MRQIVLDTETTGLNPR+GDR+IEIGCVEL++R+LTGNN H YINPERDSEEGALAVHGLT Sbjct: 1 MRQIVLDTETTGLNPRSGDRIIEIGCVELIDRRLTGNNFHHYINPERDSEEGALAVHGLT 60 Query: 61 TEFLSDKPKFAAIVDEFRDYVRDAEIIIHNAPFDVGFLDAEFKLLGLPPFKEHVDNVIDS 120 TEFLSDKPKFA IVDEFRDY+ AE++IHNAPFDVGFLDAE K + +P FK+HV ++D+ Sbjct: 61 TEFLSDKPKFAEIVDEFRDYISGAEVVIHNAPFDVGFLDAELKRVEMPLFKDHVGGILDT 120 Query: 121 LQMAKEQHPGRRNSLDALCDRYGISNAHRTLHGGLLDAALLAEVYLAMTRGQNSLTMDLA 180 LQ AKE HPG+RNSLDALCDRYG+SNAHRTLHG LLDA LLAEVYLAMTRGQNSL+MDL Sbjct: 121 LQQAKELHPGKRNSLDALCDRYGVSNAHRTLHGALLDAELLAEVYLAMTRGQNSLSMDL- 179 Query: 181 GGGDEXSN 188 GG D S+ Sbjct: 180 GGQDADSD 187 >ref|YP_001352902.1| DNA polymerase III epsilon subunit [Janthinobacterium sp. Marseille] gb|ABR88538.1| DNA polymerase III epsilon subunit [Janthinobacterium sp. Marseille] Length = 235 Score = 314 bits (805), Expect = 5e-84, Method: Compositional matrix adjust. Identities = 151/199 (75%), Positives = 167/199 (83%), Gaps = 1/199 (0%) Query: 1 MRQIVLDTETTGLNPRTGDRVIEIGCVELLNRQLTGNNLHFYINPERDSEEGALAVHGLT 60 MRQIVLDTETTGLNPR+GDR+IEIGCVEL+NR+LTGNN H YINPERDSEEGALAVHGLT Sbjct: 1 MRQIVLDTETTGLNPRSGDRIIEIGCVELVNRRLTGNNFHHYINPERDSEEGALAVHGLT 60 Query: 61 TEFLSDKPKFAAIVDEFRDYVRDAEIIIHNAPFDVGFLDAEFKLLGLPPFKEHVDNVIDS 120 TEFLSDKPKFA I EFRDY+ A++IIHNAPFD+GFLDAE K + P FKEHV VID+ Sbjct: 61 TEFLSDKPKFAEIAAEFRDYISGADVIIHNAPFDIGFLDAELKRVNTPSFKEHVGEVIDT 120 Query: 121 LQMAKEQHPGRRNSLDALCDRYGISNAHRTLHGGLLDAALLAEVYLAMTRGQNSLTMDLA 180 L AKE HPG+RNSLDALCDRYGISNAHR LHG LLDA LLAEVYLAMTRGQNSL+MDL Sbjct: 121 LVQAKEMHPGKRNSLDALCDRYGISNAHRALHGALLDAELLAEVYLAMTRGQNSLSMDL- 179 Query: 181 GGGDEXSNWRRWPTSSWSP 199 G D S+ + + +P Sbjct: 180 GASDVGSDGQVLEVVAIAP 198 >ref|YP_001119082.1| DNA polymerase III subunit epsilon [Burkholderia vietnamiensis G4] gb|ABO54247.1| DNA polymerase III, epsilon subunit [Burkholderia vietnamiensis G4] Length = 244 Score = 308 bits (789), Expect = 3e-82, Method: Compositional matrix adjust. Identities = 147/203 (72%), Positives = 170/203 (83%), Gaps = 3/203 (1%) Query: 1 MRQIVLDTETTGLNPRTGDRVIEIGCVELLNRQLTGNNLHFYINPERDSEEGALAVHGLT 60 MRQI+LDTETTGLNPR+GDR+IEIGCVELLNR+LTGNNLH Y+NPERDS+ GALAVHGLT Sbjct: 1 MRQIILDTETTGLNPRSGDRLIEIGCVELLNRRLTGNNLHIYVNPERDSDPGALAVHGLT 60 Query: 61 TEFLSDKPKFAAIVDEFRDYVRDAEIIIHNAPFDVGFLDAEFKLLGLPPFKEHVDNVIDS 120 TEFLSDKPKFA + D+ RD+V+ AE+IIHNAPFD+GFLDAEF LGLPPF EH D VID+ Sbjct: 61 TEFLSDKPKFAEVADQIRDFVKGAELIIHNAPFDLGFLDAEFARLGLPPFIEHCDGVIDT 120 Query: 121 LQMAKEQHPGRRNSLDALCDRYGISNAHRTLHGGLLDAALLAEVYLAMTRGQNSLTMDL- 179 L AK+ PG+RNSLDALCDR+GISNAHRTLHG LLD+ LLAEVYLAMTRGQ+SL +D+ Sbjct: 121 LAEAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQDSLVIDML 180 Query: 180 --AGGGDEXSNWRRWPTSSWSPP 200 AG +N +R +S P Sbjct: 181 DDAGADGGTANGQRISLASLDLP 203 >ref|ZP_02463088.1| DNA polymerase III subunit epsilon [Burkholderia thailandensis MSMB43] Length = 241 Score = 306 bits (785), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 148/203 (72%), Positives = 167/203 (82%), Gaps = 3/203 (1%) Query: 1 MRQIVLDTETTGLNPRTGDRVIEIGCVELLNRQLTGNNLHFYINPERDSEEGALAVHGLT 60 MRQI+LDTETTGLN R GDR+IE+GCVELLNR+LTG+NLHFY+NPERDS+ GALAVHGLT Sbjct: 1 MRQIILDTETTGLNARAGDRIIEVGCVELLNRRLTGSNLHFYVNPERDSDPGALAVHGLT 60 Query: 61 TEFLSDKPKFAAIVDEFRDYVRDAEIIIHNAPFDVGFLDAEFKLLGLPPFKEHVDNVIDS 120 TEFLSDKPKFA IVD+ RD+VRDAE+IIHNAPFD+GFLDAEF LLGLP F +H VID+ Sbjct: 61 TEFLSDKPKFAEIVDQLRDFVRDAELIIHNAPFDLGFLDAEFALLGLPSFTDHCAGVIDT 120 Query: 121 LQMAKEQHPGRRNSLDALCDRYGISNAHRTLHGGLLDAALLAEVYLAMTRGQNSLTMDL- 179 L AK+ PG+RNSLDALCDR+GISNAHRTLHG LLD+ LLAEVYLAMTRGQ SL +D+ Sbjct: 121 LVQAKQMFPGKRNSLDALCDRFGISNAHRTLHGALLDSELLAEVYLAMTRGQESLVIDML 180 Query: 180 --AGGGDEXSNWRRWPTSSWSPP 200 AG SN R S P Sbjct: 181 DEAGDAHRNSNEPRMAFSGLDLP 203