BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0036.p         (149 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004752122.1| ribonuclease HI [Collimonas fungivorans Ter3...   269   1e-70
ref|YP_003776804.1| ribonuclease HI protein [Herbaspirillum sero...   246   8e-64
gb|AAZ39212.1| RNase H [Janthinobacterium lividum] >gi|118161397...   246   8e-64
ref|YP_001100572.1| ribonuclease H [Herminiimonas arsenicoxydans...   242   2e-62
ref|YP_001352901.1| ribonuclease H [Janthinobacterium sp. Marsei...   240   4e-62

>ref|YP_004752122.1| ribonuclease HI [Collimonas fungivorans Ter331]
 gb|AEK61299.1| Ribonuclease HI [Collimonas fungivorans Ter331]
          Length = 144

 Score =  269 bits (687), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 130/144 (90%), Positives = 138/144 (95%)

Query: 6   LDRVEIYADGACKGNPGTGGWGALLIAGGREKELCGGERNTTNNRMELKAVIEALGALTR 65
           +D+VEIYADGACKGNPGTGGWGALL+A G+EKEL GGERNTTNNRMELKAVIEAL ALTR
Sbjct: 1   MDKVEIYADGACKGNPGTGGWGALLVADGKEKELFGGERNTTNNRMELKAVIEALTALTR 60

Query: 66  RCDVTVYTDSQYVQKGISEWIHGWKARGWKTAAREPVKNVDLWQALDAAQAQHKIEWRWV 125
            C+VTVYTDSQYVQKGISEWIHGWKARGWKTAAREPVKNVDLWQALDAAQAQHKIEW+WV
Sbjct: 61  PCEVTVYTDSQYVQKGISEWIHGWKARGWKTAAREPVKNVDLWQALDAAQAQHKIEWKWV 120

Query: 126 KGHAGHPGNERADQLANRGVDTVL 149
           +GHAGH GNERADQLANRGV TV+
Sbjct: 121 RGHAGHVGNERADQLANRGVTTVV 144


>ref|YP_003776804.1| ribonuclease HI protein [Herbaspirillum seropedicae SmR1]
 gb|ADJ64896.1| ribonuclease HI protein [Herbaspirillum seropedicae SmR1]
          Length = 143

 Score =  246 bits (628), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 114/143 (79%), Positives = 131/143 (91%)

Query: 6   LDRVEIYADGACKGNPGTGGWGALLIAGGREKELCGGERNTTNNRMELKAVIEALGALTR 65
           +D+VEIY+DGACKGNPG GGWGALL+AGG+EKE+ GGE NTTNNRMEL AVI+AL AL R
Sbjct: 1   MDKVEIYSDGACKGNPGRGGWGALLVAGGKEKEIFGGEPNTTNNRMELMAVIQALNALKR 60

Query: 66  RCDVTVYTDSQYVQKGISEWIHGWKARGWKTAAREPVKNVDLWQALDAAQAQHKIEWRWV 125
            C+V V+TDSQYVQKGISEWIHGWKARGWKTA++EPVKN DLWQALDAAQ QH++EWRWV
Sbjct: 61  PCEVVVHTDSQYVQKGISEWIHGWKARGWKTASKEPVKNADLWQALDAAQQQHQVEWRWV 120

Query: 126 KGHAGHPGNERADQLANRGVDTV 148
           +GH GH GNERADQLANRGV+++
Sbjct: 121 RGHNGHAGNERADQLANRGVESI 143


>gb|AAZ39212.1| RNase H [Janthinobacterium lividum]
 gb|ABK64079.1| putative ribonuclease H [Janthinobacterium lividum]
          Length = 145

 Score =  246 bits (628), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 117/143 (81%), Positives = 129/143 (90%)

Query: 6   LDRVEIYADGACKGNPGTGGWGALLIAGGREKELCGGERNTTNNRMELKAVIEALGALTR 65
           +D+VEIYADGACKGNPGTGGWGAL++A G +KE+ GGE NTTNNRMELKAVIEAL AL R
Sbjct: 1   MDKVEIYADGACKGNPGTGGWGALMVADGAKKEIYGGELNTTNNRMELKAVIEALTALKR 60

Query: 66  RCDVTVYTDSQYVQKGISEWIHGWKARGWKTAAREPVKNVDLWQALDAAQAQHKIEWRWV 125
            C V +YTDSQYVQKGISEWIHGWKARGWKTAA+ PVKNVDLWQALD AQA H++EWRWV
Sbjct: 61  PCQVVLYTDSQYVQKGISEWIHGWKARGWKTAAKAPVKNVDLWQALDTAQAVHEVEWRWV 120

Query: 126 KGHAGHPGNERADQLANRGVDTV 148
           +GH GHPGNERADQLAN GV+TV
Sbjct: 121 RGHNGHPGNERADQLANLGVETV 143


>ref|YP_001100572.1| ribonuclease H [Herminiimonas arsenicoxydans]
 sp|A4G7G3.1|RNH_HERAR RecName: Full=Ribonuclease H; Short=RNase H
 emb|CAL62450.1| Ribonuclease HI (RNase HI) [Herminiimonas arsenicoxydans]
          Length = 146

 Score =  242 bits (617), Expect = 2e-62,   Method: Compositional matrix adjust.
 Identities = 116/143 (81%), Positives = 129/143 (90%)

Query: 6   LDRVEIYADGACKGNPGTGGWGALLIAGGREKELCGGERNTTNNRMELKAVIEALGALTR 65
           +++++I+ DGACKGNPG GGWGALL+ G REKEL GGE  TTNNRMELKAVIEAL ALTR
Sbjct: 1   MEKIDIFTDGACKGNPGRGGWGALLVMGEREKELFGGEPGTTNNRMELKAVIEALNALTR 60

Query: 66  RCDVTVYTDSQYVQKGISEWIHGWKARGWKTAAREPVKNVDLWQALDAAQAQHKIEWRWV 125
            C+V V+TDSQYVQKGISEWIHGWKARGWKTAAR PVKNVDLWQALDAAQA+H+IEWRWV
Sbjct: 61  PCEVIVHTDSQYVQKGISEWIHGWKARGWKTAARAPVKNVDLWQALDAAQARHQIEWRWV 120

Query: 126 KGHAGHPGNERADQLANRGVDTV 148
           +GH GH GNERAD LANRGV+TV
Sbjct: 121 RGHNGHVGNERADALANRGVETV 143


>ref|YP_001352901.1| ribonuclease H [Janthinobacterium sp. Marseille]
 sp|A6SXA4.1|RNH_JANMA RecName: Full=Ribonuclease H; Short=RNase H
 gb|ABR89141.1| ribonuclease HI [Janthinobacterium sp. Marseille]
          Length = 144

 Score =  240 bits (613), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 114/142 (80%), Positives = 128/142 (90%)

Query: 6   LDRVEIYADGACKGNPGTGGWGALLIAGGREKELCGGERNTTNNRMELKAVIEALGALTR 65
           +D+++IY+DGACKGNPG GGWGALL+ G REKE+ GGE +TTNNRMELKAVIEAL  LTR
Sbjct: 1   MDKIDIYSDGACKGNPGRGGWGALLVMGEREKEIFGGELDTTNNRMELKAVIEALNLLTR 60

Query: 66  RCDVTVYTDSQYVQKGISEWIHGWKARGWKTAAREPVKNVDLWQALDAAQAQHKIEWRWV 125
            C+V V+TDSQYVQKGISEWIHGWKARGWKTAA+ PVKNVDLWQALDAAQA+HKIEWRWV
Sbjct: 61  PCEVVVHTDSQYVQKGISEWIHGWKARGWKTAAKAPVKNVDLWQALDAAQARHKIEWRWV 120

Query: 126 KGHAGHPGNERADQLANRGVDT 147
           +GH GH GNERAD LANRGV+ 
Sbjct: 121 RGHNGHAGNERADALANRGVEV 142