BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0025.p (353 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001100577.1| oligopeptide ABC transporter membrane protei... 553 e-155 ref|YP_001352896.1| ABC-type uncharacterized transport system, p... 547 e-153 ref|YP_003776809.1| ABC transporter permease [Herbaspirillum ser... 536 e-150 ref|YP_003906514.1| binding-protein-dependent transport systems ... 504 e-141 ref|YP_004228684.1| peptide ABC transporter permease [Burkholder... 504 e-141 >ref|YP_001100577.1| oligopeptide ABC transporter membrane protein [Herminiimonas arsenicoxydans] emb|CAL62455.1| ABC transporter, permease component [Herminiimonas arsenicoxydans] Length = 354 Score = 553 bits (1424), Expect = e-155, Method: Compositional matrix adjust. Identities = 292/354 (82%), Positives = 318/354 (89%), Gaps = 1/354 (0%) Query: 1 MSATTVTASSSP-TPSISPGRRIWLRFRQNRNGYASLIIFLILFVISLGAELVSNDKPLV 59 M+AT + ++ P S+SPGRR+WLRF++NR GY SLIIF IL ISL AELVSNDKPLV Sbjct: 1 MNATVSSTAAVPGAKSVSPGRRVWLRFKKNRRGYWSLIIFSILVAISLLAELVSNDKPLV 60 Query: 60 ASYHGKILFPIAHDYSEKTFGGDFESPADYLDPFIQEQFRKDGNWAIYPPNHYRFDTLNY 119 A Y+G+ +FP+ YSEK FGGDFES ADYLDPFIQEQFRKDGNWAIYP N Y FDTLNY Sbjct: 61 ARYNGEWVFPVFTTYSEKKFGGDFESQADYLDPFIQEQFRKDGNWAIYPLNRYHFDTLNY 120 Query: 120 FARQPNPAPPSSENWLGTDDRGRDVFARLLYGFRISILFGLALTVTGVVLGLLAGAVQGY 179 FA PNPAPPS+ENWLGTDDRGRDV ARLLYGFR+S+LFGLALT TGV+LGLL GA+QGY Sbjct: 121 FATSPNPAPPSAENWLGTDDRGRDVVARLLYGFRVSVLFGLALTFTGVLLGLLTGAIQGY 180 Query: 180 FAGRTDLFMQRLLEIWGSMPELYLLIIFSSIFEPSIGLLLVLLSLFGWMGLSDYVRADFL 239 FAG+TDLF QR +EIWGSMPELYLLIIF+SIF+PSIGLLL+LLSLFGWMGLSDYVRADFL Sbjct: 181 FAGKTDLFFQRFMEIWGSMPELYLLIIFASIFQPSIGLLLILLSLFGWMGLSDYVRADFL 240 Query: 240 RNRNLEYVQAGRALGLSNMQIIWRHVLPNSLTPVVTFLPFRMSASILALTSLDFLGLGVP 299 RNRNLEYVQA RALGLSN QIIWRH+LPNSLTPVVTFLPFRMS +ILALTSLDFLGLGVP Sbjct: 241 RNRNLEYVQAARALGLSNAQIIWRHILPNSLTPVVTFLPFRMSGAILALTSLDFLGLGVP 300 Query: 300 PSTPSLGELLAQGKNNLDAWWIALSTFIVLTVTLLLLTNIGDALRNALDVRRKA 353 ST SLGELLAQGKNNLDAWWIALSTF+VLTV LLLLTNIGDALRN+LDVRRKA Sbjct: 301 ASTASLGELLAQGKNNLDAWWIALSTFVVLTVMLLLLTNIGDALRNSLDVRRKA 354 >ref|YP_001352896.1| ABC-type uncharacterized transport system, permease component [Janthinobacterium sp. Marseille] gb|ABR89768.1| ABC-type uncharacterized transport system, permease component [Janthinobacterium sp. Marseille] Length = 347 Score = 547 bits (1409), Expect = e-153, Method: Compositional matrix adjust. Identities = 286/346 (82%), Positives = 318/346 (91%), Gaps = 3/346 (0%) Query: 8 ASSSPTPSISPGRRIWLRFRQNRNGYASLIIFLILFVISLGAELVSNDKPLVASYHGKIL 67 A+++P +SPGRR+WLRF+++R GY SLIIF IL VISL AEL+SNDKPLVA Y+G+++ Sbjct: 5 ATAAP---VSPGRRVWLRFKKSRRGYWSLIIFSILVVISLLAELLSNDKPLVARYNGELV 61 Query: 68 FPIAHDYSEKTFGGDFESPADYLDPFIQEQFRKDGNWAIYPPNHYRFDTLNYFARQPNPA 127 FPI YSEK FGGDFESPADYLDPFI++QF+KDGNWAIYP NHY +DTLNYFA PNPA Sbjct: 62 FPIVKTYSEKKFGGDFESPADYLDPFIRDQFKKDGNWAIYPLNHYHYDTLNYFATSPNPA 121 Query: 128 PPSSENWLGTDDRGRDVFARLLYGFRISILFGLALTVTGVVLGLLAGAVQGYFAGRTDLF 187 PPS+ENWLGTDDRGRDV ARLLYGFR+S+LFGLALT TGV+LGL+ GA+QGYFAG+TDLF Sbjct: 122 PPSAENWLGTDDRGRDVVARLLYGFRVSVLFGLALTFTGVLLGLITGAIQGYFAGKTDLF 181 Query: 188 MQRLLEIWGSMPELYLLIIFSSIFEPSIGLLLVLLSLFGWMGLSDYVRADFLRNRNLEYV 247 QR +EIWG+MPELYLLIIF+SIF+PSIGLLL+LLSLFGWM LSDYVRADFLRNRNLEYV Sbjct: 182 FQRFMEIWGAMPELYLLIIFASIFQPSIGLLLILLSLFGWMSLSDYVRADFLRNRNLEYV 241 Query: 248 QAGRALGLSNMQIIWRHVLPNSLTPVVTFLPFRMSASILALTSLDFLGLGVPPSTPSLGE 307 QA RALGLSN QIIWRHVLPNSLTPVVTFLPFRMS +ILALTSLDFLGLGVPPST SLGE Sbjct: 242 QAARALGLSNGQIIWRHVLPNSLTPVVTFLPFRMSGAILALTSLDFLGLGVPPSTASLGE 301 Query: 308 LLAQGKNNLDAWWIALSTFIVLTVTLLLLTNIGDALRNALDVRRKA 353 LLAQGKNNLDAWWIALSTF+VLTV LLLLTNIGDALRN+LDVRRKA Sbjct: 302 LLAQGKNNLDAWWIALSTFVVLTVMLLLLTNIGDALRNSLDVRRKA 347 >ref|YP_003776809.1| ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ64901.1| ABC-type uncharacterized transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 348 Score = 536 bits (1381), Expect = e-150, Method: Compositional matrix adjust. Identities = 287/348 (82%), Positives = 320/348 (91%) Query: 6 VTASSSPTPSISPGRRIWLRFRQNRNGYASLIIFLILFVISLGAELVSNDKPLVASYHGK 65 ++ ++SP PSISPGRRIWLRF +R GY SL +F +LFV+SLGAEL+SND+PL+A Y GK Sbjct: 1 MSTTTSPAPSISPGRRIWLRFCADRAGYWSLWLFSLLFVLSLGAELISNDRPLMARYQGK 60 Query: 66 ILFPIAHDYSEKTFGGDFESPADYLDPFIQEQFRKDGNWAIYPPNHYRFDTLNYFARQPN 125 ++FPI DYS+K+FGGDF+SPADYLDPFIQ Q RKDGNW +YPPN Y ++TLNYFA+QPN Sbjct: 61 LIFPIVQDYSDKSFGGDFDSPADYLDPFIQAQLRKDGNWVLYPPNRYGYNTLNYFAKQPN 120 Query: 126 PAPPSSENWLGTDDRGRDVFARLLYGFRISILFGLALTVTGVVLGLLAGAVQGYFAGRTD 185 PA PSSENWLGTDDRGRDVFARLLYGFR+S+LFG+ALT GVVLG+ AGAVQGYFAGRTD Sbjct: 121 PAAPSSENWLGTDDRGRDVFARLLYGFRVSVLFGMALTFIGVVLGVAAGAVQGYFAGRTD 180 Query: 186 LFMQRLLEIWGSMPELYLLIIFSSIFEPSIGLLLVLLSLFGWMGLSDYVRADFLRNRNLE 245 LF QRLLEIWGSMPELYLLIIFSSIF+PS+GLLLVLLSLFGWM LSDYVRADFLRNRNLE Sbjct: 181 LFTQRLLEIWGSMPELYLLIIFSSIFQPSLGLLLVLLSLFGWMSLSDYVRADFLRNRNLE 240 Query: 246 YVQAGRALGLSNMQIIWRHVLPNSLTPVVTFLPFRMSASILALTSLDFLGLGVPPSTPSL 305 Y+QA RA+GL + IIWRHVLPNS+T VVTFLPFRMSA+ILALTSLDFLGLGVPPSTPSL Sbjct: 241 YIQAARAMGLPDRLIIWRHVLPNSMTTVVTFLPFRMSAAILALTSLDFLGLGVPPSTPSL 300 Query: 306 GELLAQGKNNLDAWWIALSTFIVLTVTLLLLTNIGDALRNALDVRRKA 353 GELLAQGKNNLDAWWIALSTF+VLTVTLLLLTNIG+ALRNALDVRRKA Sbjct: 301 GELLAQGKNNLDAWWIALSTFVVLTVTLLLLTNIGNALRNALDVRRKA 348 >ref|YP_003906514.1| binding-protein-dependent transport systems inner membrane component [Burkholderia sp. CCGE1003] gb|ADN57223.1| binding-protein-dependent transport systems inner membrane component [Burkholderia sp. CCGE1003] Length = 368 Score = 504 bits (1299), Expect = e-141, Method: Compositional matrix adjust. Identities = 245/336 (72%), Positives = 281/336 (83%) Query: 15 SISPGRRIWLRFRQNRNGYASLIIFLILFVISLGAELVSNDKPLVASYHGKILFPIAHDY 74 S SP RR+W RFRQ R GY SLI+F+ FV SL L SNDKPLVA Y G + FP+ H Y Sbjct: 22 SPSPARRVWQRFRQQRLGYWSLIVFVAAFVASLAGPLWSNDKPLVARYDGHLYFPLFHTY 81 Query: 75 SEKTFGGDFESPADYLDPFIQEQFRKDGNWAIYPPNHYRFDTLNYFARQPNPAPPSSENW 134 +E TFGGDF +PADYLDP+I+++F GN+A+YPPNHY +DTLNYF++ PNPAPPS ENW Sbjct: 82 AETTFGGDFPTPADYLDPYIRQRFSAPGNFAVYPPNHYYYDTLNYFSKAPNPAPPSRENW 141 Query: 135 LGTDDRGRDVFARLLYGFRISILFGLALTVTGVVLGLLAGAVQGYFAGRTDLFMQRLLEI 194 LGTDDRGRD+FARLLYGFR+S+ FGL LT G + G+ AGAVQGYF GRTD+ QRL+EI Sbjct: 142 LGTDDRGRDLFARLLYGFRVSVEFGLVLTFIGTIFGIAAGAVQGYFGGRTDIVGQRLIEI 201 Query: 195 WGSMPELYLLIIFSSIFEPSIGLLLVLLSLFGWMGLSDYVRADFLRNRNLEYVQAGRALG 254 W +MPELYLLIIFSSIFEP LL+VLLSLFGW+GLSDYVRA+FLRNR +YV+A +A+G Sbjct: 202 WSAMPELYLLIIFSSIFEPGFILLIVLLSLFGWIGLSDYVRAEFLRNRQQDYVRAAKAMG 261 Query: 255 LSNMQIIWRHVLPNSLTPVVTFLPFRMSASILALTSLDFLGLGVPPSTPSLGELLAQGKN 314 LSN QI+WRHVLPNSLTPV+TFLPFRMS +ILALTSLDFLGLGVP TPSLGELLAQGK Sbjct: 262 LSNWQIMWRHVLPNSLTPVITFLPFRMSGAILALTSLDFLGLGVPSPTPSLGELLAQGKA 321 Query: 315 NLDAWWIALSTFIVLTVTLLLLTNIGDALRNALDVR 350 NLDAWWI+LSTF VL LLLLT +GDALRNALD R Sbjct: 322 NLDAWWISLSTFGVLVAMLLLLTFMGDALRNALDTR 357 >ref|YP_004228684.1| peptide ABC transporter permease [Burkholderia sp. CCGE1001] gb|ADX55624.1| binding-protein-dependent transport systems inner membrane component [Burkholderia sp. CCGE1001] Length = 368 Score = 504 bits (1298), Expect = e-141, Method: Compositional matrix adjust. Identities = 244/336 (72%), Positives = 280/336 (83%) Query: 15 SISPGRRIWLRFRQNRNGYASLIIFLILFVISLGAELVSNDKPLVASYHGKILFPIAHDY 74 S SP RR+W RFRQ R GY SL +F+ FV SL L SNDKPLV Y G + FP+ H Y Sbjct: 22 SPSPARRVWQRFRQQRLGYWSLFVFVAAFVASLAGPLWSNDKPLVVRYDGHLYFPLFHTY 81 Query: 75 SEKTFGGDFESPADYLDPFIQEQFRKDGNWAIYPPNHYRFDTLNYFARQPNPAPPSSENW 134 +E TFGGDF +PADYLDP+I+++F GN+A+YPPNHY +DTLNYF++ PNPAPPS ENW Sbjct: 82 AETTFGGDFPTPADYLDPYIKQRFDAPGNFAVYPPNHYYYDTLNYFSKAPNPAPPSRENW 141 Query: 135 LGTDDRGRDVFARLLYGFRISILFGLALTVTGVVLGLLAGAVQGYFAGRTDLFMQRLLEI 194 LGTDDRGRD+FARLLYGFR+S+ FGL LT G +LG+ AGAVQGYF GRTD+ QRL+EI Sbjct: 142 LGTDDRGRDLFARLLYGFRVSVEFGLVLTFIGTILGIAAGAVQGYFGGRTDIIGQRLIEI 201 Query: 195 WGSMPELYLLIIFSSIFEPSIGLLLVLLSLFGWMGLSDYVRADFLRNRNLEYVQAGRALG 254 W +MPELYLLIIFSSIFEP LL+VLLSLFGW+GLSDYVRA+FLRNR +YV+A +A+G Sbjct: 202 WSAMPELYLLIIFSSIFEPGFVLLIVLLSLFGWIGLSDYVRAEFLRNRQQDYVRAAKAMG 261 Query: 255 LSNMQIIWRHVLPNSLTPVVTFLPFRMSASILALTSLDFLGLGVPPSTPSLGELLAQGKN 314 LSN QI+WRHVLPNSLTPV+TFLPFRMS +ILALTSLDFLGLGVP TPSLGELLAQGK Sbjct: 262 LSNWQIMWRHVLPNSLTPVITFLPFRMSGAILALTSLDFLGLGVPSPTPSLGELLAQGKA 321 Query: 315 NLDAWWIALSTFIVLTVTLLLLTNIGDALRNALDVR 350 NLDAWWI+LSTF VL LLLLT +GDALRNALD R Sbjct: 322 NLDAWWISLSTFGVLVAMLLLLTFMGDALRNALDTR 357