BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0017.0024.p         (207 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001100578.1| oligopeptide ABC transporter membrane protei...   365   2e-99
emb|CAL62456.2| ABC transporter, permease component, putative ni...   365   2e-99
ref|YP_001352895.1| ABC-type uncharacterized transport system, p...   356   9e-97
ref|YP_003776810.1| ABC transporter permease [Herbaspirillum ser...   356   2e-96
ref|YP_001156015.1| binding-protein-dependent transport systems ...   318   3e-85

>ref|YP_001100578.1| oligopeptide ABC transporter membrane protein [Herminiimonas
           arsenicoxydans]
          Length = 339

 Score =  365 bits (937), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 182/194 (93%), Positives = 187/194 (96%)

Query: 14  LVLVGYSIPGFVLGVFLLVMFGGGSFVQWFPLRGLTSDDWATLSLAGKVKDYLWHITLPV 73
           +VLVGYSIPGF+LGVFLLVMFGGGSFVQWFPLRGLTSDDW  LSL GKV DYLWHITLPV
Sbjct: 146 MVLVGYSIPGFILGVFLLVMFGGGSFVQWFPLRGLTSDDWEQLSLLGKVLDYLWHITLPV 205

Query: 74  IASVAGSFAVMTMLTKNTFLEEIRKQYVLTARAKGLSENKVLYKHVFRNALIPLVTGFPA 133
            ASVAGSFAVMTMLTKNTFL+EIRKQYVLTARAKGLSEN VLYKHVFRNALIPLVTGFPA
Sbjct: 206 TASVAGSFAVMTMLTKNTFLDEIRKQYVLTARAKGLSENAVLYKHVFRNALIPLVTGFPA 265

Query: 134 AFIGAFFAGSLLIETLFSLDGLGLLSYESVIRRDYPVVMGTLYLFTLIGLVVKLLGDLCY 193
           AFIGAFFAGSLLIETLFSLDGLGLLSYESVIRRDYPVVMGTLYLFTLIGLVVKLLGDLCY
Sbjct: 266 AFIGAFFAGSLLIETLFSLDGLGLLSYESVIRRDYPVVMGTLYLFTLIGLVVKLLGDLCY 325

Query: 194 VWADPRVQFESLAK 207
           VWADPR+QFESL +
Sbjct: 326 VWADPRLQFESLNR 339


>emb|CAL62456.2| ABC transporter, permease component, putative nickel-transporting
           ATPase [Herminiimonas arsenicoxydans]
          Length = 352

 Score =  365 bits (937), Expect = 2e-99,   Method: Compositional matrix adjust.
 Identities = 182/194 (93%), Positives = 187/194 (96%)

Query: 14  LVLVGYSIPGFVLGVFLLVMFGGGSFVQWFPLRGLTSDDWATLSLAGKVKDYLWHITLPV 73
           +VLVGYSIPGF+LGVFLLVMFGGGSFVQWFPLRGLTSDDW  LSL GKV DYLWHITLPV
Sbjct: 159 MVLVGYSIPGFILGVFLLVMFGGGSFVQWFPLRGLTSDDWEQLSLLGKVLDYLWHITLPV 218

Query: 74  IASVAGSFAVMTMLTKNTFLEEIRKQYVLTARAKGLSENKVLYKHVFRNALIPLVTGFPA 133
            ASVAGSFAVMTMLTKNTFL+EIRKQYVLTARAKGLSEN VLYKHVFRNALIPLVTGFPA
Sbjct: 219 TASVAGSFAVMTMLTKNTFLDEIRKQYVLTARAKGLSENAVLYKHVFRNALIPLVTGFPA 278

Query: 134 AFIGAFFAGSLLIETLFSLDGLGLLSYESVIRRDYPVVMGTLYLFTLIGLVVKLLGDLCY 193
           AFIGAFFAGSLLIETLFSLDGLGLLSYESVIRRDYPVVMGTLYLFTLIGLVVKLLGDLCY
Sbjct: 279 AFIGAFFAGSLLIETLFSLDGLGLLSYESVIRRDYPVVMGTLYLFTLIGLVVKLLGDLCY 338

Query: 194 VWADPRVQFESLAK 207
           VWADPR+QFESL +
Sbjct: 339 VWADPRLQFESLNR 352


>ref|YP_001352895.1| ABC-type uncharacterized transport system, permease component
           [Janthinobacterium sp. Marseille]
 gb|ABR89712.1| ABC-type uncharacterized transport system, permease component
           [Janthinobacterium sp. Marseille]
          Length = 354

 Score =  356 bits (914), Expect = 9e-97,   Method: Compositional matrix adjust.
 Identities = 176/194 (90%), Positives = 185/194 (95%)

Query: 14  LVLVGYSIPGFVLGVFLLVMFGGGSFVQWFPLRGLTSDDWATLSLAGKVKDYLWHITLPV 73
           +VL+GYSIPGF+LGVFLLVMFGGGSFVQWF LRGLTSD+W  LSL GKV DYLWHI LPV
Sbjct: 161 VVLIGYSIPGFILGVFLLVMFGGGSFVQWFSLRGLTSDNWEQLSLLGKVLDYLWHIALPV 220

Query: 74  IASVAGSFAVMTMLTKNTFLEEIRKQYVLTARAKGLSENKVLYKHVFRNALIPLVTGFPA 133
            ASVAGSFA+MTMLTKNTFLEEIRKQYVLTARAKGLSEN+VLYKHVFRNALIPLVTGFPA
Sbjct: 221 TASVAGSFAMMTMLTKNTFLEEIRKQYVLTARAKGLSENRVLYKHVFRNALIPLVTGFPA 280

Query: 134 AFIGAFFAGSLLIETLFSLDGLGLLSYESVIRRDYPVVMGTLYLFTLIGLVVKLLGDLCY 193
           AFIGAFF GSLLIETLFSLDGLGLLSYESVIRRDYPVVMGTLYLFTL+GLVVKLLGDLCY
Sbjct: 281 AFIGAFFTGSLLIETLFSLDGLGLLSYESVIRRDYPVVMGTLYLFTLVGLVVKLLGDLCY 340

Query: 194 VWADPRVQFESLAK 207
           VWADPR+QFESL +
Sbjct: 341 VWADPRLQFESLNQ 354


>ref|YP_003776810.1| ABC transporter permease [Herbaspirillum seropedicae SmR1]
 gb|ADJ64902.1| ABC-type uncharacterized transport system, permease component
           protein [Herbaspirillum seropedicae SmR1]
          Length = 356

 Score =  356 bits (913), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 174/195 (89%), Positives = 186/195 (95%)

Query: 13  GLVLVGYSIPGFVLGVFLLVMFGGGSFVQWFPLRGLTSDDWATLSLAGKVKDYLWHITLP 72
           GLVLVGYSIPGFVLGVFLLV+F GGSFVQWFPLRGLTSD+W +LSL GK+ DYLWHITLP
Sbjct: 162 GLVLVGYSIPGFVLGVFLLVLFAGGSFVQWFPLRGLTSDNWESLSLMGKITDYLWHITLP 221

Query: 73  VIASVAGSFAVMTMLTKNTFLEEIRKQYVLTARAKGLSENKVLYKHVFRNALIPLVTGFP 132
           V ASV GSFAV+TMLT+NTFLEEIRKQYVLTARAKGLSE +VLYKHVFRNALIPLVTGFP
Sbjct: 222 VTASVIGSFAVITMLTRNTFLEEIRKQYVLTARAKGLSERRVLYKHVFRNALIPLVTGFP 281

Query: 133 AAFIGAFFAGSLLIETLFSLDGLGLLSYESVIRRDYPVVMGTLYLFTLIGLVVKLLGDLC 192
           +AFI +FFAGSLLIETLFSLDG+GLL+YES IRRDYPVVMGTLYLFTLIGLVVKL+GDLC
Sbjct: 282 SAFIASFFAGSLLIETLFSLDGMGLLAYESAIRRDYPVVMGTLYLFTLIGLVVKLVGDLC 341

Query: 193 YVWADPRVQFESLAK 207
           YVWADPRVQFESLAK
Sbjct: 342 YVWADPRVQFESLAK 356


>ref|YP_001156015.1| binding-protein-dependent transport systems inner membrane
           component [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
 gb|ABP34451.1| binding-protein-dependent transport systems inner membrane
           component [Polynucleobacter necessarius subsp.
           asymbioticus QLW-P1DMWA-1]
          Length = 354

 Score =  318 bits (816), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 155/191 (81%), Positives = 175/191 (91%)

Query: 14  LVLVGYSIPGFVLGVFLLVMFGGGSFVQWFPLRGLTSDDWATLSLAGKVKDYLWHITLPV 73
           ++LVGY+IPGFVLGV LLV+FGGGSF+Q FPLRGLTSD+W+ LSL GKV DYLWH+ LP+
Sbjct: 160 MILVGYAIPGFVLGVLLLVIFGGGSFLQIFPLRGLTSDNWSDLSLIGKVMDYLWHLVLPI 219

Query: 74  IASVAGSFAVMTMLTKNTFLEEIRKQYVLTARAKGLSENKVLYKHVFRNALIPLVTGFPA 133
            ASV GSFAV+TMLTKN+FLEEIRKQYVLTARAKGL+E +VL+KHVFRNA++PLVTGFPA
Sbjct: 220 TASVLGSFAVVTMLTKNSFLEEIRKQYVLTARAKGLAERQVLWKHVFRNAMLPLVTGFPA 279

Query: 134 AFIGAFFAGSLLIETLFSLDGLGLLSYESVIRRDYPVVMGTLYLFTLIGLVVKLLGDLCY 193
           AFIGAFF GSLLIETLFSLDGLGLLSYESV+RRDYPVV GTLYLFTLIGL  KL+ DLCY
Sbjct: 280 AFIGAFFTGSLLIETLFSLDGLGLLSYESVMRRDYPVVFGTLYLFTLIGLFTKLISDLCY 339

Query: 194 VWADPRVQFES 204
           V+ DPR+QF S
Sbjct: 340 VYVDPRIQFGS 350