BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0017.0020.p (434 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004752117.1| ATP-dependent RNA helicase [Collimonas fungi... 709 0.0 ref|YP_003776813.1| ATP-dependent RNA helicase [Herbaspirillum s... 709 0.0 ref|ZP_08272595.1| ATP-dependent RNA helicase [Oxalobacteraceae ... 705 0.0 ref|YP_001100581.1| ATP-dependent RNA helicase [Herminiimonas ar... 694 0.0 ref|YP_001352892.1| ATP-dependent RNA helicase [Janthinobacteriu... 694 0.0 >ref|YP_004752117.1| ATP-dependent RNA helicase [Collimonas fungivorans Ter331] gb|AEK61294.1| ATP-dependent RNA helicase [Collimonas fungivorans Ter331] Length = 468 Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/394 (87%), Positives = 371/394 (94%), Gaps = 2/394 (0%) Query: 1 MTFESLGLHPSIIKALTDSGYTAPTPVQEQAIPAAIAGKDLLVSSQTGSGKTAAFMLPSL 60 MTFESLGLH S+IKALT++GYT PT VQEQAIPAAI G+DLLVSSQTGSGKTAAFMLP+L Sbjct: 1 MTFESLGLHTSVIKALTEAGYTKPTGVQEQAIPAAIEGRDLLVSSQTGSGKTAAFMLPAL 60 Query: 61 HKFASMPPAAPGA--KTPNQEAQAAKARGDRPRFRPAQPKMLVLTPTRELALQVTTATDK 118 HKFAS AP A KTPNQE QA+++RG+RPRF+PAQPKMLVLTPTRELALQVTTATDK Sbjct: 61 HKFASEQQVAPAAAGKTPNQEMQASRSRGERPRFKPAQPKMLVLTPTRELALQVTTATDK 120 Query: 119 YCAHMRRLKAVSILGGMPYPKQMQLLSRNPEILVATPGRLIDHMDSGKIDFSELEILVLD 178 Y +HM+R+KA+SILGGMPYPKQMQLL++NPEILVATPGRLIDHM+SGKIDFS+L+ILVLD Sbjct: 121 YGSHMKRVKAISILGGMPYPKQMQLLAKNPEILVATPGRLIDHMESGKIDFSQLQILVLD 180 Query: 179 EADRMLDMGFIEDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNAPQIIQIAGSATK 238 EADRMLDMGFI+DIEKIV ATP +RQTMLFSATLDGVVGNMAKRIT P IIQIAGSATK Sbjct: 181 EADRMLDMGFIDDIEKIVDATPESRQTMLFSATLDGVVGNMAKRITKNPMIIQIAGSATK 240 Query: 239 HENIAQRVHFVDDLSHKNRLLDFLLRDVTMDQAVVFTATKRDADTIADRLNIAGFAAAAL 298 HENI Q+VHFVDDLSHKNRLLD LLRDVTMDQAVVFTATKRDADTIADRLNIAGFAAAAL Sbjct: 241 HENIQQKVHFVDDLSHKNRLLDHLLRDVTMDQAVVFTATKRDADTIADRLNIAGFAAAAL 300 Query: 299 HGDMHQGARNRTLDGMRRGQVRVLVATDVAARGIDVPGITHVFNYDLPKFPEDYVHRIGR 358 HGDMHQGARNRTLD +RRGQVRVLVATDVAARGIDVP ITHVFNYDLPKFPEDYVHRIGR Sbjct: 301 HGDMHQGARNRTLDSLRRGQVRVLVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 360 Query: 359 TGRAGRNGVAVSLVNHAEGMHVKRIERFTKQPIP 392 TGRAGRNGVAVSLVNHAEG++VKRIERFTKQ IP Sbjct: 361 TGRAGRNGVAVSLVNHAEGVNVKRIERFTKQLIP 394 >ref|YP_003776813.1| ATP-dependent RNA helicase [Herbaspirillum seropedicae SmR1] gb|ADJ64905.1| ATP-dependent RNA helicase protein [Herbaspirillum seropedicae SmR1] Length = 510 Score = 709 bits (1830), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/392 (86%), Positives = 373/392 (95%) Query: 1 MTFESLGLHPSIIKALTDSGYTAPTPVQEQAIPAAIAGKDLLVSSQTGSGKTAAFMLPSL 60 MTFE+LGL+PSIIKALT++GYT+PTPVQE+AIPAAI+G+DLLVSSQTGSGKTAAFMLPSL Sbjct: 1 MTFEALGLNPSIIKALTEAGYTSPTPVQEKAIPAAISGQDLLVSSQTGSGKTAAFMLPSL 60 Query: 61 HKFASMPPAAPGAKTPNQEAQAAKARGDRPRFRPAQPKMLVLTPTRELALQVTTATDKYC 120 H+ A +PPA A+TPNQE QA++ARG+RPR++PAQPKMLVLTPTRELALQVTTATDKY Sbjct: 61 HQLADLPPAPQAARTPNQERQASRARGERPRYQPAQPKMLVLTPTRELALQVTTATDKYG 120 Query: 121 AHMRRLKAVSILGGMPYPKQMQLLSRNPEILVATPGRLIDHMDSGKIDFSELEILVLDEA 180 A+MRR++ VSILGGMPYPKQMQLLSRNPEILVATPGRLIDHM+SGKIDFS+L+ILVLDEA Sbjct: 121 AYMRRVRVVSILGGMPYPKQMQLLSRNPEILVATPGRLIDHMESGKIDFSQLQILVLDEA 180 Query: 181 DRMLDMGFIEDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNAPQIIQIAGSATKHE 240 DRMLDMGFI+DIEKIVAATPATRQTMLFSATLDGVVGNMAKRITN P IQIA S+T+HE Sbjct: 181 DRMLDMGFIDDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNNPLTIQIASSSTRHE 240 Query: 241 NIAQRVHFVDDLSHKNRLLDFLLRDVTMDQAVVFTATKRDADTIADRLNIAGFAAAALHG 300 NI QRVHFVDDLSHKNRLLD LLRD ++DQAV+FTATKRDADTIADRLNIAGFAAAALHG Sbjct: 241 NIMQRVHFVDDLSHKNRLLDHLLRDTSIDQAVIFTATKRDADTIADRLNIAGFAAAALHG 300 Query: 301 DMHQGARNRTLDGMRRGQVRVLVATDVAARGIDVPGITHVFNYDLPKFPEDYVHRIGRTG 360 DMHQGARNRTL+ +RRGQVR+LVATDVAARGIDVPGITHVFNYDLPKF EDYVHRIGRTG Sbjct: 301 DMHQGARNRTLNSLRRGQVRMLVATDVAARGIDVPGITHVFNYDLPKFAEDYVHRIGRTG 360 Query: 361 RAGRNGVAVSLVNHAEGMHVKRIERFTKQPIP 392 RAGRNGVA+SLVNHAEGM VKRIERFTKQ IP Sbjct: 361 RAGRNGVAISLVNHAEGMQVKRIERFTKQTIP 392 >ref|ZP_08272595.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480] gb|EGF33948.1| ATP-dependent RNA helicase [Oxalobacteraceae bacterium IMCC9480] Length = 468 Score = 705 bits (1820), Expect = 0.0, Method: Compositional matrix adjust. Identities = 346/394 (87%), Positives = 368/394 (93%), Gaps = 2/394 (0%) Query: 1 MTFESLGLHPSIIKALTDSGYTAPTPVQEQAIPAAIAGKDLLVSSQTGSGKTAAFMLPSL 60 MTFE+LGLH S+IKALT+SGY PT VQEQAIPAAI G+DLLVSSQTGSGKTAAFMLP+L Sbjct: 1 MTFEALGLHTSVIKALTESGYIKPTSVQEQAIPAAIEGRDLLVSSQTGSGKTAAFMLPAL 60 Query: 61 HKFASMPPA--APGAKTPNQEAQAAKARGDRPRFRPAQPKMLVLTPTRELALQVTTATDK 118 HKFA+ A +KTPNQE Q+A ARG+RPRF+ AQPKMLVLTPTRELALQVTTATDK Sbjct: 61 HKFATAAELQLADSSKTPNQEKQSALARGERPRFKAAQPKMLVLTPTRELALQVTTATDK 120 Query: 119 YCAHMRRLKAVSILGGMPYPKQMQLLSRNPEILVATPGRLIDHMDSGKIDFSELEILVLD 178 Y + MRR+KAVSILGGMPYPKQMQLL++NPEILVATPGRLIDHM+SGKIDFS+LEILVLD Sbjct: 121 YGSQMRRIKAVSILGGMPYPKQMQLLAKNPEILVATPGRLIDHMESGKIDFSQLEILVLD 180 Query: 179 EADRMLDMGFIEDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNAPQIIQIAGSATK 238 EADRMLDMGFI+DIEKIVAATP +RQTMLFSATLDGVVGNMAKRIT P IIQIAGSATK Sbjct: 181 EADRMLDMGFIDDIEKIVAATPESRQTMLFSATLDGVVGNMAKRITKNPMIIQIAGSATK 240 Query: 239 HENIAQRVHFVDDLSHKNRLLDFLLRDVTMDQAVVFTATKRDADTIADRLNIAGFAAAAL 298 HENI+QRVHFVDDLSHKNRLLD LLRD TMDQAVVFTATKRDADTIADRLNIAGFAAAAL Sbjct: 241 HENISQRVHFVDDLSHKNRLLDHLLRDETMDQAVVFTATKRDADTIADRLNIAGFAAAAL 300 Query: 299 HGDMHQGARNRTLDGMRRGQVRVLVATDVAARGIDVPGITHVFNYDLPKFPEDYVHRIGR 358 HGDMHQGARNRTLDGMRRGQVRVLVATDVAARGIDVP ITHVFNYDLPKFPEDYVHRIGR Sbjct: 301 HGDMHQGARNRTLDGMRRGQVRVLVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 360 Query: 359 TGRAGRNGVAVSLVNHAEGMHVKRIERFTKQPIP 392 TGRAGRNG+AVSLVNHAEG++VKRIERFTKQ IP Sbjct: 361 TGRAGRNGIAVSLVNHAEGINVKRIERFTKQLIP 394 >ref|YP_001100581.1| ATP-dependent RNA helicase [Herminiimonas arsenicoxydans] emb|CAL62459.1| Putative ATP-dependent RNA helicase [Herminiimonas arsenicoxydans] Length = 468 Score = 694 bits (1792), Expect = 0.0, Method: Compositional matrix adjust. Identities = 341/394 (86%), Positives = 364/394 (92%), Gaps = 2/394 (0%) Query: 1 MTFESLGLHPSIIKALTDSGYTAPTPVQEQAIPAAIAGKDLLVSSQTGSGKTAAFMLPSL 60 MTFESLGLH SIIKALT+SGYTAPT VQ QAIPAAI G+D++VSSQTGSGKTAAFMLP+L Sbjct: 1 MTFESLGLHASIIKALTESGYTAPTGVQAQAIPAAIEGRDMMVSSQTGSGKTAAFMLPAL 60 Query: 61 HKFA--SMPPAAPGAKTPNQEAQAAKARGDRPRFRPAQPKMLVLTPTRELALQVTTATDK 118 HKFA S G +TPNQEAQ+A++RGDRPRF+ AQPKMLVLTPTRELALQVTT+TDK Sbjct: 61 HKFAVQSEQQQPEGGRTPNQEAQSARSRGDRPRFKAAQPKMLVLTPTRELALQVTTSTDK 120 Query: 119 YCAHMRRLKAVSILGGMPYPKQMQLLSRNPEILVATPGRLIDHMDSGKIDFSELEILVLD 178 Y A M+R+KAVSILGGMPYPKQMQLL++NPEILVATPGRLIDHM+SGKIDFSEL+ILVLD Sbjct: 121 YGAFMKRVKAVSILGGMPYPKQMQLLAKNPEILVATPGRLIDHMESGKIDFSELQILVLD 180 Query: 179 EADRMLDMGFIEDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNAPQIIQIAGSATK 238 EADRMLDMGFI+DIEKIVAATP RQTMLFSATLDG VG MAKRIT P +IQIAGSATK Sbjct: 181 EADRMLDMGFIDDIEKIVAATPEGRQTMLFSATLDGTVGTMAKRITKDPLVIQIAGSATK 240 Query: 239 HENIAQRVHFVDDLSHKNRLLDFLLRDVTMDQAVVFTATKRDADTIADRLNIAGFAAAAL 298 HENI Q VHFVDDLSHKNRLLD LLRD TMDQAVVFTATKRDADTIADRLNIAGFAAAAL Sbjct: 241 HENIKQGVHFVDDLSHKNRLLDHLLRDETMDQAVVFTATKRDADTIADRLNIAGFAAAAL 300 Query: 299 HGDMHQGARNRTLDGMRRGQVRVLVATDVAARGIDVPGITHVFNYDLPKFPEDYVHRIGR 358 HGDMHQGARNRTLDG+RRGQ+RVLVATDVAARGIDVP ITHVFNYDLPKFPEDYVHRIGR Sbjct: 301 HGDMHQGARNRTLDGLRRGQIRVLVATDVAARGIDVPAITHVFNYDLPKFPEDYVHRIGR 360 Query: 359 TGRAGRNGVAVSLVNHAEGMHVKRIERFTKQPIP 392 TGRAGRNG+AVSLVNHAEGM+VKRIERF KQ IP Sbjct: 361 TGRAGRNGIAVSLVNHAEGMNVKRIERFIKQLIP 394 >ref|YP_001352892.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] gb|ABR89515.1| ATP-dependent RNA helicase [Janthinobacterium sp. Marseille] Length = 466 Score = 694 bits (1791), Expect = 0.0, Method: Compositional matrix adjust. Identities = 340/392 (86%), Positives = 364/392 (92%) Query: 1 MTFESLGLHPSIIKALTDSGYTAPTPVQEQAIPAAIAGKDLLVSSQTGSGKTAAFMLPSL 60 MTFESLGLH SIIKALT+SGYTAPT VQ QAIPAAI G+D++VSSQTGSGKTAAFMLP+L Sbjct: 1 MTFESLGLHASIIKALTESGYTAPTGVQAQAIPAAIEGRDMMVSSQTGSGKTAAFMLPAL 60 Query: 61 HKFASMPPAAPGAKTPNQEAQAAKARGDRPRFRPAQPKMLVLTPTRELALQVTTATDKYC 120 HKFAS KTPNQEAQ+A++RGDRPRF+PAQPKMLVLTPTRELALQVTT+TDKY Sbjct: 61 HKFASEGDQPQTGKTPNQEAQSARSRGDRPRFKPAQPKMLVLTPTRELALQVTTSTDKYG 120 Query: 121 AHMRRLKAVSILGGMPYPKQMQLLSRNPEILVATPGRLIDHMDSGKIDFSELEILVLDEA 180 A M+R+KAVSILGGMPYPKQMQLL++NPEILVATPGRLIDHM+SGKIDFS+L+ILVLDEA Sbjct: 121 AFMKRVKAVSILGGMPYPKQMQLLAKNPEILVATPGRLIDHMESGKIDFSQLQILVLDEA 180 Query: 181 DRMLDMGFIEDIEKIVAATPATRQTMLFSATLDGVVGNMAKRITNAPQIIQIAGSATKHE 240 DRMLDMGFI+DIEKIVAATP RQTMLFSATLDG+VGNMAKRIT IIQIAGSATKHE Sbjct: 181 DRMLDMGFIDDIEKIVAATPEGRQTMLFSATLDGMVGNMAKRITKDALIIQIAGSATKHE 240 Query: 241 NIAQRVHFVDDLSHKNRLLDFLLRDVTMDQAVVFTATKRDADTIADRLNIAGFAAAALHG 300 NI Q VHFVDDLSHKNR+LD LLRD TMDQAVVFTATKRDADTIADRLNIAGFAAAALHG Sbjct: 241 NIKQCVHFVDDLSHKNRMLDHLLRDETMDQAVVFTATKRDADTIADRLNIAGFAAAALHG 300 Query: 301 DMHQGARNRTLDGMRRGQVRVLVATDVAARGIDVPGITHVFNYDLPKFPEDYVHRIGRTG 360 DMHQGARNRTLDG+RRGQ+RVLVATDVAARGIDVPGITHV NYDLPKFPEDYVHRIGRTG Sbjct: 301 DMHQGARNRTLDGLRRGQIRVLVATDVAARGIDVPGITHVVNYDLPKFPEDYVHRIGRTG 360 Query: 361 RAGRNGVAVSLVNHAEGMHVKRIERFTKQPIP 392 RAGRNG+AVSLVNHAE M+VKRIERF KQ IP Sbjct: 361 RAGRNGIAVSLVNHAESMNVKRIERFIKQLIP 392