BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0021.p         (170 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774034.1| small protein A [Herbaspirillum seropedicae ...   199   1e-49
ref|YP_004754502.1| hypothetical protein CFU_3855 [Collimonas fu...   175   3e-42
ref|YP_001354581.1| hypothetical protein mma_2890 [Janthinobacte...   167   7e-40
ref|YP_001100899.1| hypothetical protein HEAR2656 [Herminiimonas...   165   2e-39
ref|ZP_08272881.1| SmpA/OmlA domain protein [Oxalobacteraceae ba...   153   7e-36

>ref|YP_003774034.1| small protein A [Herbaspirillum seropedicae SmR1]
 gb|ADJ62126.1| small protein A (tmRNA-binding) protein [Herbaspirillum seropedicae
           SmR1]
          Length = 181

 Score =  199 bits (507), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 91/130 (70%), Positives = 112/130 (86%), Gaps = 1/130 (0%)

Query: 38  GVQVSKKS-SLFGFLKPYRIDIQQGNFVSKEMVAQLKPGMTRDQVRFVLGTPLLADVFHS 96
           GV+VS KS SLFGFL+PYRIDIQQGNFVS+EMVAQL+PG+TRDQVRFVLGTPLL D+FH+
Sbjct: 44  GVKVSGKSNSLFGFLRPYRIDIQQGNFVSREMVAQLRPGLTRDQVRFVLGTPLLTDMFHT 103

Query: 97  DRWDYEFRLAKGNGELMSSRVSVFFKDNLMERYEGGSDLPTEQEYLSLIAGSKKGAMPEL 156
           +RWDY+FRLAKGNGE+M+SRV+VFFKD+L++  +GG DLPTE EYL+LI  +K G+  +L
Sbjct: 104 NRWDYDFRLAKGNGEIMTSRVTVFFKDDLLDHVQGGQDLPTESEYLTLITDAKVGSKAKL 163

Query: 157 SDTPTNTAPP 166
           +D     A P
Sbjct: 164 TDDDVKPASP 173


>ref|YP_004754502.1| hypothetical protein CFU_3855 [Collimonas fungivorans Ter331]
 gb|AEK63679.1| hypothetical protein CFU_3855 [Collimonas fungivorans Ter331]
          Length = 192

 Score =  175 bits (443), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 94/184 (51%), Positives = 114/184 (61%), Gaps = 17/184 (9%)

Query: 1   MLPSYRTTA-----LALIALSTLLSGCASKKPAEG--------APAP---DATGVQVSKK 44
           +L   RT+A      A +     L+GCASK P  G        A AP   D +GVQ  K 
Sbjct: 4   LLSPVRTSARIVPLAAAVLFMASLAGCASKNPPAGQSVAGADPAAAPVATDTSGVQTIKH 63

Query: 45  SSLFGFLKPYRIDIQQGNFVSKEMVAQLKPGMTRDQVRFVLGTPLLADVFHSDRWDYEFR 104
               G   PYRIDIQQGNFVSKEM+AQ+K GMTR+QVRF LGTPLL D+FH DRWDY FR
Sbjct: 64  RRFLGIFSPYRIDIQQGNFVSKEMLAQVKEGMTREQVRFALGTPLLTDLFHDDRWDYVFR 123

Query: 105 LAKGNGELMSSRVSVFFKDNLMERYEGGSDLPTEQEYLSLIAGSKKGAMPELSDTPTNTA 164
           L KGNGE+ +SRVSVFF  NL+ R +GG +LPTE +YL  I+G    A   + +     +
Sbjct: 124 LQKGNGEVTTSRVSVFFNGNLLARVDGG-NLPTENDYLDRISGGASEAKKSVKNVEIAPS 182

Query: 165 PPSS 168
            PS+
Sbjct: 183 VPSA 186


>ref|YP_001354581.1| hypothetical protein mma_2890 [Janthinobacterium sp. Marseille]
 gb|ABR90487.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille]
          Length = 253

 Score =  167 bits (422), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 76/116 (65%), Positives = 90/116 (77%)

Query: 37  TGVQVSKKSSLFGFLKPYRIDIQQGNFVSKEMVAQLKPGMTRDQVRFVLGTPLLADVFHS 96
           +GVQV ++    G   PYR DIQQGNFVS+EMVAQLK GMT+DQV F+LGTPLL DVFH 
Sbjct: 136 SGVQVKREKRFLGIFSPYRPDIQQGNFVSQEMVAQLKEGMTQDQVIFLLGTPLLTDVFHG 195

Query: 97  DRWDYEFRLAKGNGELMSSRVSVFFKDNLMERYEGGSDLPTEQEYLSLIAGSKKGA 152
           DRWDY FR+ KGNGE+ SSRV+V FKD L+  +EGG DLPTE++YL+ IA   K A
Sbjct: 196 DRWDYAFRMQKGNGEITSSRVTVHFKDKLVSSFEGGGDLPTEKDYLARIADKAKAA 251


>ref|YP_001100899.1| hypothetical protein HEAR2656 [Herminiimonas arsenicoxydans]
 emb|CAL62778.1| Hypothetical protein, putative SmpA/OmlA domain [Herminiimonas
           arsenicoxydans]
          Length = 216

 Score =  165 bits (418), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 76/117 (64%), Positives = 92/117 (78%), Gaps = 1/117 (0%)

Query: 36  ATGVQVSKKSSLFGFLKPYRIDIQQGNFVSKEMVAQLKPGMTRDQVRFVLGTPLLADVFH 95
           ATGVQ  + +   G  +PYR DIQQGNFVS+EMVAQLK GMT+DQV F+LGTPLL D+FH
Sbjct: 99  ATGVQTKQANRFLGIFRPYRPDIQQGNFVSQEMVAQLKEGMTQDQVIFLLGTPLLNDLFH 158

Query: 96  SDRWDYEFRLAKGNGELMSSRVSVFFKDNLMERYEGGSDLPTEQEYLSLIAGSKKGA 152
           +DRWDY FRL KGNGE+ +SRV+VFFKD L+  +EGG DLPTE++YL  I+   K A
Sbjct: 159 ADRWDYAFRLQKGNGEITTSRVTVFFKDKLVSHFEGG-DLPTEKDYLDRISDKAKEA 214


>ref|ZP_08272881.1| SmpA/OmlA domain protein [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF33645.1| SmpA/OmlA domain protein [Oxalobacteraceae bacterium IMCC9480]
          Length = 182

 Score =  153 bits (387), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 87/178 (48%), Positives = 110/178 (61%), Gaps = 28/178 (15%)

Query: 18  LLSGCASKKPAEGAPAPDA----------------------TGVQVSKKSS---LFGFLK 52
           LL+GCASK P   APA  A                       G+Q S  +S     G L 
Sbjct: 5   LLAGCASKNPLMEAPASMAAGPASAASSASAAEIASAARANAGMQRSTPTSARRFLGVLS 64

Query: 53  PYRIDIQQGNFVSKEMVAQLKPGMTRDQVRFVLGTPLLADVFHSDRWDYEFRLAKGNGEL 112
           PYRIDI QGNF+S+EMV QLK GMT DQVRF LGTPL+ D+FH+DRWDY FR+ K N E+
Sbjct: 65  PYRIDIPQGNFISEEMVQQLKEGMTPDQVRFALGTPLIIDIFHADRWDYVFRMLKRNDEV 124

Query: 113 MSSRVSVFFKDNLMERYEGGSDLPTEQEYLSLIAGSKKGAMPELSDTPTNTAPPSSSK 170
           +SSRV+V+FKD  + R+EGG +LPTE +YL ++AG     +  L+  PT    PSS++
Sbjct: 125 LSSRVTVYFKDGRVSRFEGG-NLPTEVDYLEMLAGGVPQKVKPLA--PTVPVAPSSAR 179