BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0018.p         (146 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003774031.1| biopolymer transport ExbD/TolR protein [Herb...   226   1e-57
ref|YP_001354584.1| biopolymer transport protein ExbD [Janthinob...   207   6e-52
ref|YP_001896996.1| biopolymertransporter ExbD/TolR [Burkholderi...   189   2e-46
ref|ZP_03266384.1| Biopolymer transport protein ExbD/TolR [Burkh...   185   2e-45
ref|ZP_06843270.1| Biopolymer transport protein ExbD/TolR [Burkh...   184   3e-45

>ref|YP_003774031.1| biopolymer transport ExbD/TolR protein [Herbaspirillum seropedicae
           SmR1]
 gb|ADJ62123.1| biopolymer transport ExbD/TolR protein [Herbaspirillum seropedicae
           SmR1]
          Length = 148

 Score =  226 bits (575), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 106/146 (72%), Positives = 126/146 (86%)

Query: 1   MSFGGFNDNHQAGPMAEINVTPMVDVMLVLLVIFILSAPLFTHSLQLDLPTAKSAPAPEK 60
           MSFGGFNDN  + PMA+INVTPMVDVMLVLLVIFI++AP+FTH+L+LDLPTA+SAPAPEK
Sbjct: 1   MSFGGFNDNQNSAPMADINVTPMVDVMLVLLVIFIITAPMFTHALKLDLPTAQSAPAPEK 60

Query: 61  PQTVSVSIDAAGKLYWQDQAVTLEELTRRMAEAAGKKPQPEVQLRADKATRYEVIADVMS 120
           P+T+++ IDAAGKLYW DQ V+ EEL  R+  AAGK+PQPE+QLRADK+TRY+ IA+VMS
Sbjct: 61  PETITLGIDAAGKLYWNDQPVSSEELDARLTAAAGKQPQPELQLRADKSTRYQTIAEVMS 120

Query: 121 AAQSNGLNKLGFVTDPKPNTTSTEKK 146
           AAQ  GL+KLGFVTDPK      EKK
Sbjct: 121 AAQGAGLSKLGFVTDPKTPAHVQEKK 146


>ref|YP_001354584.1| biopolymer transport protein ExbD [Janthinobacterium sp. Marseille]
 gb|ABR90158.1| biopolymer transport protein ExbD [Janthinobacterium sp. Marseille]
          Length = 142

 Score =  207 bits (526), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 93/135 (68%), Positives = 119/135 (88%)

Query: 1   MSFGGFNDNHQAGPMAEINVTPMVDVMLVLLVIFILSAPLFTHSLQLDLPTAKSAPAPEK 60
           M+FGGFND  QAGPMA+INVTPMVDVMLVLLVIFI++APLFTH+++LDLP+A+SAPAP +
Sbjct: 1   MAFGGFNDKQQAGPMADINVTPMVDVMLVLLVIFIITAPLFTHAIKLDLPSAQSAPAPTE 60

Query: 61  PQTVSVSIDAAGKLYWQDQAVTLEELTRRMAEAAGKKPQPEVQLRADKATRYEVIADVMS 120
           P T+S+SI+ AG ++W + AVTL++L  R+A AA ++PQP+VQLRADK TRYEVIA VM+
Sbjct: 61  PTTISLSINGAGAVFWNNDAVTLDDLNTRLATAAKQQPQPQVQLRADKGTRYEVIAQVMA 120

Query: 121 AAQSNGLNKLGFVTD 135
           +AQ NG+ KLGFVT+
Sbjct: 121 SAQGNGITKLGFVTE 135


>ref|YP_001896996.1| biopolymertransporter ExbD/TolR [Burkholderia phytofirmans PsJN]
 gb|ACD17772.1| Biopolymer transport protein ExbD/TolR [Burkholderia phytofirmans
           PsJN]
          Length = 143

 Score =  189 bits (479), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 85/138 (61%), Positives = 109/138 (78%)

Query: 1   MSFGGFNDNHQAGPMAEINVTPMVDVMLVLLVIFILSAPLFTHSLQLDLPTAKSAPAPEK 60
           M+FGG      A PMAEIN+TP++DVMLVLLVIFI++APLFTH+++LDLP   +APA + 
Sbjct: 1   MAFGGLEKKQTAAPMAEINMTPLIDVMLVLLVIFIITAPLFTHAIRLDLPKVAAAPARQT 60

Query: 61  PQTVSVSIDAAGKLYWQDQAVTLEELTRRMAEAAGKKPQPEVQLRADKATRYEVIADVMS 120
           PQT+S+SIDAAGKLYW    +TLE++  R A+A  +  QPE+QLRA+++TRYEVIA VM 
Sbjct: 61  PQTISLSIDAAGKLYWDGSVITLEQMRARFAQAGKESDQPEIQLRAERSTRYEVIAQVMG 120

Query: 121 AAQSNGLNKLGFVTDPKP 138
           AAQ  GL ++GFVTDP P
Sbjct: 121 AAQQAGLERIGFVTDPPP 138


>ref|ZP_03266384.1| Biopolymer transport protein ExbD/TolR [Burkholderia sp. H160]
 gb|EEA02093.1| Biopolymer transport protein ExbD/TolR [Burkholderia sp. H160]
          Length = 143

 Score =  185 bits (469), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 83/138 (60%), Positives = 110/138 (79%)

Query: 1   MSFGGFNDNHQAGPMAEINVTPMVDVMLVLLVIFILSAPLFTHSLQLDLPTAKSAPAPEK 60
           M+FGG      A PMAEIN+TP++DVMLVLLVIFI++APLF+H+++LDLP   +APA + 
Sbjct: 1   MAFGGLEKKQTAAPMAEINMTPLIDVMLVLLVIFIITAPLFSHAIRLDLPKVAAAPARQT 60

Query: 61  PQTVSVSIDAAGKLYWQDQAVTLEELTRRMAEAAGKKPQPEVQLRADKATRYEVIADVMS 120
           PQT+S+SIDAAGKLYW D+ +TL ++  + AEA  +  QP++QLRA+++TRYEVIA VM 
Sbjct: 61  PQTISLSIDAAGKLYWNDKPITLAQMRAQFAEAGKQADQPDIQLRAERSTRYEVIAQVMG 120

Query: 121 AAQSNGLNKLGFVTDPKP 138
           AAQ  GL ++GFVTDP P
Sbjct: 121 AAQQAGLERIGFVTDPPP 138


>ref|ZP_06843270.1| Biopolymer transport protein ExbD/TolR [Burkholderia sp. Ch1-1]
 gb|EFG69005.1| Biopolymer transport protein ExbD/TolR [Burkholderia sp. Ch1-1]
          Length = 143

 Score =  184 bits (468), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 83/138 (60%), Positives = 108/138 (78%)

Query: 1   MSFGGFNDNHQAGPMAEINVTPMVDVMLVLLVIFILSAPLFTHSLQLDLPTAKSAPAPEK 60
           M+FGG +    A PMAEIN+TP++DVMLVLLVIFI++APLFTH+++LDLP   +APA + 
Sbjct: 1   MAFGGLDKKQAAAPMAEINMTPLIDVMLVLLVIFIITAPLFTHAIRLDLPKVAAAPARQT 60

Query: 61  PQTVSVSIDAAGKLYWQDQAVTLEELTRRMAEAAGKKPQPEVQLRADKATRYEVIADVMS 120
           PQT+S+SIDAAGKLYW    +TLE++  R A+A  +  QPE+ L A+++TRYEVIA VM 
Sbjct: 61  PQTISLSIDAAGKLYWNGTVITLEQMRTRFAQAGKQNDQPEIHLSAERSTRYEVIAQVMG 120

Query: 121 AAQSNGLNKLGFVTDPKP 138
           AAQ  GL ++GFVTDP P
Sbjct: 121 AAQQAGLERIGFVTDPPP 138