BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0016.0013.p         (163 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_004754418.1| ABC transporter permease [Collimonas fungivo...   294   4e-78
ref|YP_003774027.1| spermidine/putrescine ABC transporter permea...   285   2e-75
ref|ZP_07380230.1| binding-protein-dependent transport systems i...   220   5e-56
ref|YP_002873137.1| putative ABC transporter membrane protein [P...   220   6e-56
ref|YP_003931864.1| ABC transport system, permease component [Pa...   219   8e-56

>ref|YP_004754418.1| ABC transporter permease [Collimonas fungivorans Ter331]
 gb|AEK63595.1| ABC transporter, permease protein [Collimonas fungivorans Ter331]
          Length = 277

 Score =  294 bits (752), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 146/163 (89%), Positives = 155/163 (95%)

Query: 1   MMPVAVPGLATSLALIMAYGQYRAFRGSLLFILVGHVLFTLPFMVRPVLAVMQSSQLAVL 60
           MMPVAVPGLAT+LALIMAYGQYR FRGSLLFIL+GHVLFTLPFMVRPVLAVMQSSQL+VL
Sbjct: 115 MMPVAVPGLATALALIMAYGQYREFRGSLLFILIGHVLFTLPFMVRPVLAVMQSSQLSVL 174

Query: 61  EEAAASLGAGMRQRFFGVVIPNAASGILAGALMVVTLSIGEFNITWMLHTPLTMTLPVGL 120
           EEAAASLGAG+ QRFFG+VIPN  SGILAGALMVVTLSIGEFNITWMLHTPLTMTLPVGL
Sbjct: 175 EEAAASLGAGLGQRFFGIVIPNVFSGILAGALMVVTLSIGEFNITWMLHTPLTMTLPVGL 234

Query: 121 ADAYASMRLEVGSAYTLIFLLMIVPLLVAMQWATQTTRTRVRL 163
           AD+YASMRLEVGSAYTLIF LMI+PLL+AMQW T  TR+RVRL
Sbjct: 235 ADSYASMRLEVGSAYTLIFFLMIIPLLIAMQWVTHATRSRVRL 277


>ref|YP_003774027.1| spermidine/putrescine ABC transporter permease [Herbaspirillum
           seropedicae SmR1]
 gb|ADJ62119.1| ABC-type spermidine/putrescine transport system, permease component
           II protein [Herbaspirillum seropedicae SmR1]
          Length = 267

 Score =  285 bits (728), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 143/163 (87%), Positives = 150/163 (92%)

Query: 1   MMPVAVPGLATSLALIMAYGQYRAFRGSLLFILVGHVLFTLPFMVRPVLAVMQSSQLAVL 60
           MMPVAVPGLAT+LALIMAYGQYR FR SL FILVGHV+FTLPFMVRPVLAVMQSSQLA L
Sbjct: 105 MMPVAVPGLATALALIMAYGQYREFRASLWFILVGHVIFTLPFMVRPVLAVMQSSQLAQL 164

Query: 61  EEAAASLGAGMRQRFFGVVIPNAASGILAGALMVVTLSIGEFNITWMLHTPLTMTLPVGL 120
           EEAAASLGAG  +RFFG+VIPNAASGILAGALMVVTLSIGEFNITWMLHTPLT TLPVGL
Sbjct: 165 EEAAASLGAGRMRRFFGIVIPNAASGILAGALMVVTLSIGEFNITWMLHTPLTQTLPVGL 224

Query: 121 ADAYASMRLEVGSAYTLIFLLMIVPLLVAMQWATQTTRTRVRL 163
           ADAYASMRLEVGSAYTLIF  MI+PLL+ MQWATQ TR +V L
Sbjct: 225 ADAYASMRLEVGSAYTLIFFFMIIPLLIGMQWATQATRKKVSL 267


>ref|ZP_07380230.1| binding-protein-dependent transport systems inner membrane
           component [Pantoea sp. aB]
 gb|EFM18595.1| binding-protein-dependent transport systems inner membrane
           component [Pantoea sp. aB]
          Length = 271

 Score =  220 bits (561), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 106/143 (74%), Positives = 124/143 (86%)

Query: 1   MMPVAVPGLATSLALIMAYGQYRAFRGSLLFILVGHVLFTLPFMVRPVLAVMQSSQLAVL 60
           M+PVA+PGLAT+L +I+ YGQ+ A R S LFIL+GHVLFTLPFM+RPVL+VMQ+  L  L
Sbjct: 102 MLPVALPGLATALGIILLYGQFSALRDSWLFILIGHVLFTLPFMIRPVLSVMQAIDLPRL 161

Query: 61  EEAAASLGAGMRQRFFGVVIPNAASGILAGALMVVTLSIGEFNITWMLHTPLTMTLPVGL 120
           EEAAASLGA   +RFF VV+PN  +GILAGA MV+TLS+GEFNITWMLHTPLT TLPVGL
Sbjct: 162 EEAAASLGASFWRRFFTVVVPNCRNGILAGAFMVITLSVGEFNITWMLHTPLTKTLPVGL 221

Query: 121 ADAYASMRLEVGSAYTLIFLLMI 143
           AD+Y SMRLEVGSAYTLIF++MI
Sbjct: 222 ADSYTSMRLEVGSAYTLIFIMMI 244


>ref|YP_002873137.1| putative ABC transporter membrane protein [Pseudomonas fluorescens
           SBW25]
 emb|CAY49794.1| putative ABC transport system, membrane protein [Pseudomonas
           fluorescens SBW25]
          Length = 264

 Score =  220 bits (560), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 113/150 (75%), Positives = 134/150 (89%)

Query: 2   MPVAVPGLATSLALIMAYGQYRAFRGSLLFILVGHVLFTLPFMVRPVLAVMQSSQLAVLE 61
           +PVA+PGLA++LAL++ YGQ+ +FR S +FILVGHVLFTLPF+VRPV+AVMQ  QL VLE
Sbjct: 103 LPVAMPGLASALALLLTYGQFGSFRSSWVFILVGHVLFTLPFLVRPVMAVMQRQQLPVLE 162

Query: 62  EAAASLGAGMRQRFFGVVIPNAASGILAGALMVVTLSIGEFNITWMLHTPLTMTLPVGLA 121
           EAAASLGAG  +RFF VV+PN  +GILAG LMVVTLS+GEFN+TWMLHTP+T TLPVGLA
Sbjct: 163 EAAASLGAGPIKRFFSVVVPNCRAGILAGVLMVVTLSLGEFNLTWMLHTPMTKTLPVGLA 222

Query: 122 DAYASMRLEVGSAYTLIFLLMIVPLLVAMQ 151
           D+YAS RLE+ SAYTLIFLLMIVPLL+A+Q
Sbjct: 223 DSYASARLEIASAYTLIFLLMIVPLLIALQ 252


>ref|YP_003931864.1| ABC transport system, permease component [Pantoea vagans C9-1]
 gb|ADO10415.1| putative ABC transport system, permease component [Pantoea vagans
           C9-1]
          Length = 278

 Score =  219 bits (559), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 106/143 (74%), Positives = 124/143 (86%)

Query: 1   MMPVAVPGLATSLALIMAYGQYRAFRGSLLFILVGHVLFTLPFMVRPVLAVMQSSQLAVL 60
           M+PVA+PGLAT+L +I+ YGQ+ A R S LFIL+GHVLFTLPFM+RPVL+VMQ+  L  L
Sbjct: 109 MLPVALPGLATALGIILLYGQFSALRDSWLFILIGHVLFTLPFMIRPVLSVMQAIDLPRL 168

Query: 61  EEAAASLGAGMRQRFFGVVIPNAASGILAGALMVVTLSIGEFNITWMLHTPLTMTLPVGL 120
           EEAAASLGA   +RFF VV+PN  +GILAGA MV+TLS+GEFNITWMLHTPLT TLPVGL
Sbjct: 169 EEAAASLGASFWRRFFTVVVPNCRNGILAGAFMVITLSVGEFNITWMLHTPLTKTLPVGL 228

Query: 121 ADAYASMRLEVGSAYTLIFLLMI 143
           AD+Y SMRLEVGSAYTLIF++MI
Sbjct: 229 ADSYTSMRLEVGSAYTLIFIMMI 251