BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0016.0004.p (339 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003774020.1| DNA polymerase III subunit delta [Herbaspiri... 593 e-167 ref|YP_004754507.1| DNA polymerase III subunit delta [Collimonas... 582 e-164 ref|YP_001354588.1| DNA polymerase III subunit delta [Janthinoba... 573 e-161 ref|YP_001100906.1| DNA polymerase III subunit delta [Herminiimo... 573 e-161 ref|ZP_08274163.1| DNA polymerase III delta subunit [Oxalobacter... 496 e-138 >ref|YP_003774020.1| DNA polymerase III subunit delta [Herbaspirillum seropedicae SmR1] gb|ADJ62112.1| DNA polymerase III (delta subunit) protein [Herbaspirillum seropedicae SmR1] Length = 339 Score = 593 bits (1529), Expect = e-167, Method: Compositional matrix adjust. Identities = 290/338 (85%), Positives = 314/338 (92%) Query: 1 MQLRLDALDTHLTKSLSSLYVIASDEHLLALEAADKIRKTARANGYTERDVLVVERSFKW 60 MQLR D+LD HL KSL+ LYVIASDEHLLALEAADKIR++ARANGYTER+VLVVERSFKW Sbjct: 1 MQLRHDSLDAHLGKSLAPLYVIASDEHLLALEAADKIRRSARANGYTEREVLVVERSFKW 60 Query: 61 GELLAANQSQSLFGDKKLIELRIPTGKPGKDGGQALQEYAANLNPDNLTIISLPKLDWAT 120 GELLAANQSQSLFGDKKLIELRIPTGKPGKDGGQALQ+YAANL+PDNLTIISLPKLDWAT Sbjct: 61 GELLAANQSQSLFGDKKLIELRIPTGKPGKDGGQALQDYAANLSPDNLTIISLPKLDWAT 120 Query: 121 AKAAWVGTLQQAGVYIDIPLVERAHLPGWIGNRLAVQQQSADRQCMDFIADRVEGNLLAA 180 KAAWVG LQQA VYIDIPLVER LPGWIGNRLA QQQSADR C+DFIADRVEGNLLAA Sbjct: 121 QKAAWVGALQQAAVYIDIPLVERPQLPGWIGNRLAAQQQSADRPCLDFIADRVEGNLLAA 180 Query: 181 HQEIQKLGLLYPTGKLTFEQVHDAVLNVARYDVFKLNEAMLSGDAARLMRMMDGLKGEGE 240 HQEIQKL LLYP G+L+FEQV DAVLNVARYDVFKLNEAMLSGD ARL RMM+GLKGEGE Sbjct: 181 HQEIQKLALLYPAGQLSFEQVQDAVLNVARYDVFKLNEAMLSGDIARLTRMMEGLKGEGE 240 Query: 241 ALPLVLWAVAEEVRTLLKLKSGVSQGKQLGMLLKEYRIWGPREKLMDPALRRISLATLQT 300 ALPLVLWAV EE+RTLLKLKSG++QGK +G LLKEYRIWGPRE+LM+PALRRISLA L+ Sbjct: 241 ALPLVLWAVTEEIRTLLKLKSGMAQGKPVGALLKEYRIWGPRERLMEPALRRISLAALEQ 300 Query: 301 ALQEAAQIDKMVKGLRAKAFSGDAWDALAQLGLKVARG 338 ALQEAA +D+MVKGLRA++F+GD WDAL QLGLK+ARG Sbjct: 301 ALQEAALVDRMVKGLRARSFAGDPWDALLQLGLKLARG 338 >ref|YP_004754507.1| DNA polymerase III subunit delta [Collimonas fungivorans Ter331] gb|AEK63684.1| DNA polymerase III delta subunit [Collimonas fungivorans Ter331] Length = 338 Score = 582 bits (1499), Expect = e-164, Method: Compositional matrix adjust. Identities = 283/337 (83%), Positives = 308/337 (91%) Query: 1 MQLRLDALDTHLTKSLSSLYVIASDEHLLALEAADKIRKTARANGYTERDVLVVERSFKW 60 MQLR DALD HL K+L+ LYVI SDEHLLALEA+DKIRK+AR+NG +ERDVLVV+RSFKW Sbjct: 1 MQLRFDALDGHLAKTLAPLYVITSDEHLLALEASDKIRKSARSNGCSERDVLVVDRSFKW 60 Query: 61 GELLAANQSQSLFGDKKLIELRIPTGKPGKDGGQALQEYAANLNPDNLTIISLPKLDWAT 120 GELLAANQSQSLFGDKKLIELRIPTGKPGKDGGQALQ Y A LNPDN+TIISLPKLDWAT Sbjct: 61 GELLAANQSQSLFGDKKLIELRIPTGKPGKDGGQALQNYTATLNPDNVTIISLPKLDWAT 120 Query: 121 AKAAWVGTLQQAGVYIDIPLVERAHLPGWIGNRLAVQQQSADRQCMDFIADRVEGNLLAA 180 KAAWV TLQQ+ VYIDIPLVERAHLP WIG RLA QQQSADRQ +DFIADRVEGNLLAA Sbjct: 121 QKAAWVATLQQSAVYIDIPLVERAHLPNWIGVRLAAQQQSADRQSLDFIADRVEGNLLAA 180 Query: 181 HQEIQKLGLLYPTGKLTFEQVHDAVLNVARYDVFKLNEAMLSGDAARLMRMMDGLKGEGE 240 HQEIQKL LL+P GKL+FEQ HDAVLNVARYDVFKLNEAML GD ARL+RMMDGLKGEGE Sbjct: 181 HQEIQKLALLHPPGKLSFEQCHDAVLNVARYDVFKLNEAMLVGDTARLVRMMDGLKGEGE 240 Query: 241 ALPLVLWAVAEEVRTLLKLKSGVSQGKQLGMLLKEYRIWGPREKLMDPALRRISLATLQT 300 ALPLVLWAV+EE+RTLLKLKS +QG+ + LLKEYRIWGPRE+LM+PALRR+SLATL+ Sbjct: 241 ALPLVLWAVSEEIRTLLKLKSAAAQGRPIPALLKEYRIWGPRERLMEPALRRLSLATLEA 300 Query: 301 ALQEAAQIDKMVKGLRAKAFSGDAWDALAQLGLKVAR 337 AL++AAQ+DKMVKGLRAKAFSGDAWDAL QLGLKVA Sbjct: 301 ALKDAAQVDKMVKGLRAKAFSGDAWDALLQLGLKVAH 337 >ref|YP_001354588.1| DNA polymerase III subunit delta [Janthinobacterium sp. Marseille] gb|ABR89038.1| DNA polymerase III delta subunit [Janthinobacterium sp. Marseille] Length = 338 Score = 573 bits (1478), Expect = e-161, Method: Compositional matrix adjust. Identities = 276/338 (81%), Positives = 310/338 (91%) Query: 1 MQLRLDALDTHLTKSLSSLYVIASDEHLLALEAADKIRKTARANGYTERDVLVVERSFKW 60 MQLR+DALD HL K L+ LYVI SDEHLLALEAADKIRK ARA Y+ER+VLVV+RSFKW Sbjct: 1 MQLRIDALDAHLNKPLAGLYVITSDEHLLALEAADKIRKAARAQAYSEREVLVVDRSFKW 60 Query: 61 GELLAANQSQSLFGDKKLIELRIPTGKPGKDGGQALQEYAANLNPDNLTIISLPKLDWAT 120 GELLAANQSQSLFGDKKLIELRIPTGKPGKDGG+ALQ+YAA+L+PDN+T+I+LPKLDWAT Sbjct: 61 GELLAANQSQSLFGDKKLIELRIPTGKPGKDGGKALQDYAASLSPDNVTLITLPKLDWAT 120 Query: 121 AKAAWVGTLQQAGVYIDIPLVERAHLPGWIGNRLAVQQQSADRQCMDFIADRVEGNLLAA 180 KAAWV +LQQA VYIDIPL+ERA LP W+G RLA Q+QSA+R+C+DFIADRVEGNLLAA Sbjct: 121 QKAAWVTSLQQASVYIDIPLIERAQLPAWLGVRLAAQRQSANRECLDFIADRVEGNLLAA 180 Query: 181 HQEIQKLGLLYPTGKLTFEQVHDAVLNVARYDVFKLNEAMLSGDAARLMRMMDGLKGEGE 240 HQEIQKL LLYP G L+FEQ+HDAVLNVARYDVFKLNEAMLSGD RL+RM++GLKGEGE Sbjct: 181 HQEIQKLALLYPEGPLSFEQIHDAVLNVARYDVFKLNEAMLSGDTTRLVRMLEGLKGEGE 240 Query: 241 ALPLVLWAVAEEVRTLLKLKSGVSQGKQLGMLLKEYRIWGPREKLMDPALRRISLATLQT 300 ALPLVLWAVAEEVRTLLKLK+GV+QG+ L L KEYRIWGPRE+L++PALRR+ LATL+ Sbjct: 241 ALPLVLWAVAEEVRTLLKLKAGVAQGRPLSQLTKEYRIWGPRERLVEPALRRLKLATLED 300 Query: 301 ALQEAAQIDKMVKGLRAKAFSGDAWDALAQLGLKVARG 338 ALQEAAQIDKMVKGLRAK FSGDAWDA+ QLGLK+ARG Sbjct: 301 ALQEAAQIDKMVKGLRAKQFSGDAWDAMLQLGLKIARG 338 >ref|YP_001100906.1| DNA polymerase III subunit delta [Herminiimonas arsenicoxydans] emb|CAL62785.1| DNA polymerase III, delta subunit [Herminiimonas arsenicoxydans] Length = 338 Score = 573 bits (1476), Expect = e-161, Method: Compositional matrix adjust. Identities = 275/338 (81%), Positives = 313/338 (92%) Query: 1 MQLRLDALDTHLTKSLSSLYVIASDEHLLALEAADKIRKTARANGYTERDVLVVERSFKW 60 MQLR+DAL THLTK L+ LYVI SDEHLLALEAADKIR+TARA G++ER+VLVV+RSFKW Sbjct: 1 MQLRIDALATHLTKPLAGLYVITSDEHLLALEAADKIRQTARAQGFSEREVLVVDRSFKW 60 Query: 61 GELLAANQSQSLFGDKKLIELRIPTGKPGKDGGQALQEYAANLNPDNLTIISLPKLDWAT 120 GELLAANQSQSLFGDKKLIELRIPTGKPG+DGG+ALQ+YAA+L+PDN+T+I+LPKLDWAT Sbjct: 61 GELLAANQSQSLFGDKKLIELRIPTGKPGRDGGKALQDYAASLSPDNVTLITLPKLDWAT 120 Query: 121 AKAAWVGTLQQAGVYIDIPLVERAHLPGWIGNRLAVQQQSADRQCMDFIADRVEGNLLAA 180 KAAWV +LQQA V+IDIPLVERA LP W+G RLA Q QSADR C+DFIA+RVEGNLLAA Sbjct: 121 QKAAWVASLQQASVFIDIPLVERAQLPAWLGVRLAAQGQSADRACLDFIAERVEGNLLAA 180 Query: 181 HQEIQKLGLLYPTGKLTFEQVHDAVLNVARYDVFKLNEAMLSGDAARLMRMMDGLKGEGE 240 HQEIQKL LLYP G L+FEQVHDAVLNVARYDVFKLNEAMLSGD ARL+RM++GL+GEGE Sbjct: 181 HQEIQKLALLYPAGPLSFEQVHDAVLNVARYDVFKLNEAMLSGDTARLVRMLEGLQGEGE 240 Query: 241 ALPLVLWAVAEEVRTLLKLKSGVSQGKQLGMLLKEYRIWGPREKLMDPALRRISLATLQT 300 ALPLVLWAVAEE+RTLLKLKSG++QG+ L L KE+RIWGPRE+L++PALRR+ LATL++ Sbjct: 241 ALPLVLWAVAEEIRTLLKLKSGMAQGRPLSQLTKEHRIWGPRERLIEPALRRLKLATLES 300 Query: 301 ALQEAAQIDKMVKGLRAKAFSGDAWDALAQLGLKVARG 338 ALQEAAQIDKMVKGLRAK FSGDAWDA+ QLGLK+ARG Sbjct: 301 ALQEAAQIDKMVKGLRAKKFSGDAWDAMLQLGLKIARG 338 >ref|ZP_08274163.1| DNA polymerase III delta subunit [Oxalobacteraceae bacterium IMCC9480] gb|EGF32367.1| DNA polymerase III delta subunit [Oxalobacteraceae bacterium IMCC9480] Length = 312 Score = 496 bits (1278), Expect = e-138, Method: Compositional matrix adjust. Identities = 237/310 (76%), Positives = 281/310 (90%) Query: 28 LLALEAADKIRKTARANGYTERDVLVVERSFKWGELLAANQSQSLFGDKKLIELRIPTGK 87 +LALEAADKIRKTARA G +ERDVL V+RSFKWGEL AAN QSLFGD+KLIELR+PTGK Sbjct: 1 MLALEAADKIRKTARAQGLSERDVLQVDRSFKWGELTAANNEQSLFGDRKLIELRLPTGK 60 Query: 88 PGKDGGQALQEYAANLNPDNLTIISLPKLDWATAKAAWVGTLQQAGVYIDIPLVERAHLP 147 PGK+GGQALQ+YAA+ NPDN+T+I+LPKLDWATAKAAWVGTLQQ+ VYI+IPL+ER LP Sbjct: 61 PGKEGGQALQQYAASPNPDNVTLITLPKLDWATAKAAWVGTLQQSAVYIEIPLIERNQLP 120 Query: 148 GWIGNRLAVQQQSADRQCMDFIADRVEGNLLAAHQEIQKLGLLYPTGKLTFEQVHDAVLN 207 GWI RLA Q QSA+R ++F+A+RVEGNLLAAHQEIQKLGLL+ G+L+FEQVHDAVLN Sbjct: 121 GWISTRLAAQGQSAERDALNFMAERVEGNLLAAHQEIQKLGLLHGDGQLSFEQVHDAVLN 180 Query: 208 VARYDVFKLNEAMLSGDAARLMRMMDGLKGEGEALPLVLWAVAEEVRTLLKLKSGVSQGK 267 VARYDVFKLNEAML+GD ARL+RM+DGL+GEGEALPLVLWAVAEE+RTLLK+K+ + QG+ Sbjct: 181 VARYDVFKLNEAMLAGDVARLVRMLDGLQGEGEALPLVLWAVAEEIRTLLKIKTAMEQGQ 240 Query: 268 QLGMLLKEYRIWGPREKLMDPALRRISLATLQTALQEAAQIDKMVKGLRAKAFSGDAWDA 327 +G LLK+YRIWGPREKLM+PALRR+S+ATL+ A+Q+AAQ+D++VKGLRA A +GDAWDA Sbjct: 241 PVGQLLKQYRIWGPREKLMEPALRRLSMATLEAAIQKAAQLDRLVKGLRAPALAGDAWDA 300 Query: 328 LAQLGLKVAR 337 + QL L VAR Sbjct: 301 MRQLALGVAR 310