BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0175.p (304 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08628864.1| carbon monoxide dehydrogenase medium chain [B... 305 8e-81 ref|YP_002825143.1| carbon monoxide dehydrogenase medium chain [... 286 4e-75 ref|ZP_03516786.1| probable carbon-monoxide dehydrogenase protei... 284 1e-74 gb|AEJ26985.1| Carbon monoxide dehydrogenase medium chain [Parac... 268 8e-70 ref|YP_003320551.1| molybdopterin dehydrogenase FAD-binding prot... 259 3e-67 >ref|ZP_08628864.1| carbon monoxide dehydrogenase medium chain [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08223.1| carbon monoxide dehydrogenase medium chain [Bradyrhizobiaceae bacterium SG-6C] Length = 291 Score = 305 bits (780), Expect = 8e-81, Method: Compositional matrix adjust. Identities = 147/290 (50%), Positives = 193/290 (66%) Query: 1 MKPPKFDYLRPATVPEAIDALVAAEGGGKIIAGGQSLMPMLNFRLLNPTVLIDINRIAEL 60 MKP FDY+R ++ A+ L A+G GK+IAGGQSLMPM+NFRL+ P+VL+DINRI L Sbjct: 1 MKPASFDYVRAESIEHAVQTLARADGDGKVIAGGQSLMPMMNFRLVKPSVLVDINRIPGL 60 Query: 61 SSFREEDGGLRIGSLTRHHKLETSDAVKRLFPVLNAAMAHVAHLAIRNRGTIGGSITHAD 120 + L +G+L RH + PVL+ AM HVAHL +RNRGT GS+ HAD Sbjct: 61 DRIEQRGSRLALGALVRHRMTAADRLIATQIPVLHHAMKHVAHLTVRNRGTFCGSVCHAD 120 Query: 121 PAAELPMMMVLLESEITIATPRGSRVVAAEDFFLGALTSAVEEDELVTEIYLPALPPNAG 180 PAAE+PMM +LL I I++PRG+RVVAAEDFFL +L + +E DE+VTEI + P G Sbjct: 121 PAAEMPMMTLLLNGAIQISSPRGTRVVAAEDFFLSSLMTCLEPDEVVTEIEIDTFPAETG 180 Query: 181 WAFEEVARRAGDFALAAVGVIMTVEDGRVTHSRVGVMGVGDTPLRLFDVETVLYDEACEG 240 W FEE ARR GD+ALAAV V MT DG V+ R+ +MGVG+ P+R+ +ET++ Sbjct: 181 WGFEEFARRHGDYALAAVAVTMTRRDGVVSAPRIALMGVGEMPMRMSALETMIEGRELTD 240 Query: 241 GILDQAIEVARASVAPATDLHASADYRRHLLGVLVKRALQTAWLRANGKD 290 ++ +A+ R + P +DLH SADYRRHL G L +RAL AW RA ++ Sbjct: 241 DLIGEAVAALRDEITPNSDLHGSADYRRHLAGALTRRALSAAWSRAGVRE 290 >ref|YP_002825143.1| carbon monoxide dehydrogenase medium chain [Sinorhizobium fredii NGR234] gb|ACP24390.1| carbon monoxide dehydrogenase medium chain [Sinorhizobium fredii NGR234] Length = 353 Score = 286 bits (731), Expect = 4e-75, Method: Compositional matrix adjust. Identities = 153/287 (53%), Positives = 191/287 (66%) Query: 1 MKPPKFDYLRPATVPEAIDALVAAEGGGKIIAGGQSLMPMLNFRLLNPTVLIDINRIAEL 60 MKP F+YL + EA +AL AA G GKIIAGGQSLMPM+NFRL+ PT+LIDINRIA L Sbjct: 59 MKPAPFEYLAATSAAEAAEALAAANGDGKIIAGGQSLMPMINFRLVKPTILIDINRIAGL 118 Query: 61 SSFREEDGGLRIGSLTRHHKLETSDAVKRLFPVLNAAMAHVAHLAIRNRGTIGGSITHAD 120 + LRIG+ RH T V R P+L+ AM HVAHL +RNRGT GS+ HAD Sbjct: 119 DRIEKHGERLRIGATVRHRMTATDALVHRHIPILHDAMHHVAHLTVRNRGTFCGSVCHAD 178 Query: 121 PAAELPMMMVLLESEITIATPRGSRVVAAEDFFLGALTSAVEEDELVTEIYLPALPPNAG 180 PAAE+P+M +LL+ IT + RG R +AA DFF+G+L +A+E DE VT I + LPP G Sbjct: 179 PAAEMPVMTLLLDGTITALSIRGERQIAASDFFVGSLMTALEPDEFVTSIDIDTLPPETG 238 Query: 181 WAFEEVARRAGDFALAAVGVIMTVEDGRVTHSRVGVMGVGDTPLRLFDVETVLYDEACEG 240 W FEE +RR GDFALA V + + DG R G+MGVG+TPLRL D+ET++ +A Sbjct: 239 WGFEEFSRRHGDFALACVATTLRIVDGVAGDVRFGMMGVGETPLRLPDIETLVEGQAISE 298 Query: 241 GILDQAIEVARASVAPATDLHASADYRRHLLGVLVKRALQTAWLRAN 287 +L E + + P TD+HASADYR HL G L +RAL+ AW RA Sbjct: 299 MLLQDVSETLKGLLHPNTDIHASADYRLHLAGALARRALRDAWTRAT 345 >ref|ZP_03516786.1| probable carbon-monoxide dehydrogenase protein [Rhizobium etli IE4771] Length = 319 Score = 284 bits (727), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 143/298 (47%), Positives = 191/298 (64%) Query: 1 MKPPKFDYLRPATVPEAIDALVAAEGGGKIIAGGQSLMPMLNFRLLNPTVLIDINRIAEL 60 MKP +FDY+ P T+ E AL AAEG GKIIAGGQSLMPM+ FRL+ PT+LIDINR+A L Sbjct: 1 MKPAQFDYIAPTTIDEVAAALAAAEGDGKIIAGGQSLMPMIIFRLVKPTILIDINRVAGL 60 Query: 61 SSFREEDGGLRIGSLTRHHKLETSDAVKRLFPVLNAAMAHVAHLAIRNRGTIGGSITHAD 120 +RIG+ RHH T +++ P+++ AM HVAH+ +RNRGT GS+ HAD Sbjct: 61 DRIELHGDRVRIGATVRHHTTATDAIIRQHLPIVHEAMHHVAHMTVRNRGTFCGSVAHAD 120 Query: 121 PAAELPMMMVLLESEITIATPRGSRVVAAEDFFLGALTSAVEEDELVTEIYLPALPPNAG 180 PA E+PMM L+ + + RG R + A +FF+G+L +++E DE V + L A+ P AG Sbjct: 121 PATEMPMMTRFLDGTVIAYSQRGRREIPAAEFFVGSLVNSLEPDEFVIRVELDAMRPGAG 180 Query: 181 WAFEEVARRAGDFALAAVGVIMTVEDGRVTHSRVGVMGVGDTPLRLFDVETVLYDEACEG 240 W FEE A+R GDFALA + DG + RVG+MGVG+TPLRL ++E ++ Sbjct: 181 WGFEEFAKRHGDFALACFATTLHCVDGMASDVRVGMMGVGETPLRLEEIEGIIEGTEVSE 240 Query: 241 GILDQAIEVARASVAPATDLHASADYRRHLLGVLVKRALQTAWLRANGKDVASGSSSS 298 +LD + + P TD+HASAD+RRHL GVL KRAL+ AW RA + +S S Sbjct: 241 PVLDMVADRLAGILTPNTDIHASADFRRHLSGVLAKRALRAAWSRAKPRKASSNMSEK 298 >gb|AEJ26985.1| Carbon monoxide dehydrogenase medium chain [Paracoccus denitrificans SD1] Length = 301 Score = 268 bits (685), Expect = 8e-70, Method: Compositional matrix adjust. Identities = 145/310 (46%), Positives = 198/310 (63%), Gaps = 15/310 (4%) Query: 1 MKPPKFDYLRPATVPEAIDALVAAEGGGKIIAGGQSLMPMLNFRLLNPTVLIDINRIAEL 60 MKP +FDY+R +V A+ L G KIIAGGQSLMPM+NFRL+ P VL+DINRI L Sbjct: 1 MKPARFDYVRAESVEHALAVLAEHGGEAKIIAGGQSLMPMINFRLVKPAVLVDINRIPGL 60 Query: 61 SSFREEDGGLRIGSLTRHHKLETSDAVKRLFPVLNAAMAHVAHLAIRNRGTIGGSITHAD 120 E+ LR+G+L RH + + R PVL+ AM HVAH+ +RNRGT GS+ HAD Sbjct: 61 EVIEEQGDRLRMGALARHRMTASDPTIGRRLPVLHDAMHHVAHMTVRNRGTFCGSVCHAD 120 Query: 121 PAAELPMMMVLLESEITIATPRGSRVVAAEDFFLGALTSAVEEDELVTEIYLPALPPNAG 180 PAAE+PM+ + + + IA+ G RV+ +F +G+L +A+E +E+VT I + P+AG Sbjct: 121 PAAEMPMIAQMFDGRVEIASASGVRVLPVSEFLVGSLVNALEPEEMVTGISIGTTSPDAG 180 Query: 181 WAFEEVARRAGDFALAAVGVIMTVEDGR-VTHSRVGVMGVGDTPLRLFDVETVLYDEACE 239 W FEE +RR GDFALAAV V V+DG + +R+G+ GVG+T LR+ D+E ++ + Sbjct: 181 WGFEEFSRRHGDFALAAVAVTFRVDDGEAIRDARIGMTGVGETALRMRDLEALV-----D 235 Query: 240 GGILDQAIEVARA-----SVAPATDLHASADYRRHLLGVLVKRALQTAWLRANGKDVASG 294 G LD+ +E A +++P D+HASADYRR+L GVL RAL+ A RA + ASG Sbjct: 236 GRRLDETLEAEVAAWLSDNLSPNADIHASADYRRNLSGVLAARALRKAHARALERRAASG 295 Query: 295 SSSSGGHHHE 304 G HE Sbjct: 296 K----GQDHE 301 >ref|YP_003320551.1| molybdopterin dehydrogenase FAD-binding protein [Sphaerobacter thermophilus DSM 20745] gb|ACZ39729.1| molybdopterin dehydrogenase FAD-binding protein [Sphaerobacter thermophilus DSM 20745] Length = 290 Score = 259 bits (662), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 139/290 (47%), Positives = 192/290 (66%), Gaps = 2/290 (0%) Query: 1 MKPPKFDYLRPATVPEAIDALVAAEGGGKIIAGGQSLMPMLNFRLLNPTVLIDINRIAEL 60 MKPP FDY P TV E L + GKI+AGGQSL+P+LN RL P VLIDINR++EL Sbjct: 1 MKPPVFDYFAPTTVDETHRVLAEHQADGKILAGGQSLVPVLNMRLAYPAVLIDINRVSEL 60 Query: 61 SSFREEDGGLRIGSLTRHHKLETSDAVKRLFPVLNAAMAHVAHLAIRNRGTIGGSITHAD 120 ++G L IG+LTR L SD V FP+L A ++ H IRNRGT+GGS+ HAD Sbjct: 61 DHITLDNGRLTIGALTRQQTLLESDVVAEHFPLLAEATRYIGHRTIRNRGTVGGSLAHAD 120 Query: 121 PAAELPMMMVLLESEITIATPRGSRVVAAEDFFLGALTSAVEEDELVTEIYLPALPPNAG 180 PAAELP +M+ L +E+T+++ RG R V A+DFF+ +T+A+ DEL+ + +PA P +G Sbjct: 121 PAAELPAVMLALNAELTLSSTRGQRQVPAQDFFVDYMTTALNPDELLQAVQIPAPAPRSG 180 Query: 181 WAFEEVARRAGDFALAAVGVIMTVED-GRVTHSRVGVMGVGDTPLRLFDVETVLYDEACE 239 W+F+EV+RR GDFAL A ++T+++ G T +R+ + GVG TP+ + D+ T L Sbjct: 181 WSFKEVSRRHGDFALVATAALVTLDEAGTCTDARLVLTGVGPTPVTV-DLSTTLIGAVPT 239 Query: 240 GGILDQAIEVARASVAPATDLHASADYRRHLLGVLVKRALQTAWLRANGK 289 + A + AR +V P +D+HA++DYRRHL VL +RAL TA RA G+ Sbjct: 240 ADAVAAAADAAREAVDPPSDVHATSDYRRHLARVLSRRALTTAIERAGGR 289