BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0174.p         (180 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002825142.1| carbon monoxide dehydrogenase small chain [S...   213   1e-53
gb|AEJ26984.1| Carbon monoxide dehydrogenase small chain [Paraco...   210   8e-53
ref|YP_004173204.1| carbon monoxide dehydrogenase small chain [A...   204   4e-51
ref|YP_004336419.1| carbon-monoxide dehydrogenase [Pseudonocardi...   202   2e-50
ref|YP_002521823.1| aldehyde oxidase small subunit [Thermomicrob...   199   1e-49

>ref|YP_002825142.1| carbon monoxide dehydrogenase small chain [Sinorhizobium fredii
           NGR234]
 gb|ACP24389.1| carbon monoxide dehydrogenase small chain [Sinorhizobium fredii
           NGR234]
          Length = 161

 Score =  213 bits (541), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 97/153 (63%), Positives = 121/153 (79%)

Query: 2   SKNLDIKLVVNGTTYERAVEPRLLLSDFLRHTLGLTGTHVGCEHGVCGACTIMVDGDSIR 61
            K + + + VNG  +   VEPR+LLSDFLRH LGLTGTHVGCEHGVCGACT+++DG S R
Sbjct: 3   EKKITLSVSVNGVAHTATVEPRMLLSDFLRHELGLTGTHVGCEHGVCGACTVILDGRSAR 62

Query: 62  ACLMLAVQADGCVVETVEGLGTVDQLNPLQQAFHSCHGLQCGFCTPGMLMTCTDMLKKYP 121
           +CL LAVQA+G  +ETVEG G+VD+L  +Q+AF   H LQCGFCTPG +M  TDML+ +P
Sbjct: 63  SCLTLAVQAEGVEIETVEGQGSVDRLGRIQEAFRQHHALQCGFCTPGFIMAITDMLRHHP 122

Query: 122 LESDAEIRDGLSGNLCRCTGYVHIVDAVKMVKR 154
           LESD +IR+ LSGN+CRCTGY HIV+AV+ + R
Sbjct: 123 LESDEQIREALSGNICRCTGYEHIVNAVRELAR 155


>gb|AEJ26984.1| Carbon monoxide dehydrogenase small chain [Paracoccus denitrificans
           SD1]
          Length = 161

 Score =  210 bits (534), Expect = 8e-53,   Method: Compositional matrix adjust.
 Identities = 98/149 (65%), Positives = 119/149 (79%)

Query: 6   DIKLVVNGTTYERAVEPRLLLSDFLRHTLGLTGTHVGCEHGVCGACTIMVDGDSIRACLM 65
           +I + VNG  + R VEPRLLLSDFLRH LGLTGTHVGCEHGVCGACTI ++G S R+CL 
Sbjct: 7   EITVTVNGINHTRQVEPRLLLSDFLRHELGLTGTHVGCEHGVCGACTISLNGRSARSCLT 66

Query: 66  LAVQADGCVVETVEGLGTVDQLNPLQQAFHSCHGLQCGFCTPGMLMTCTDMLKKYPLESD 125
           LAV ADG  VET+E  GT D L+ +Q+AF   HGLQCGFCTPGM+M   D+L  +PLE+D
Sbjct: 67  LAVMADGQEVETIEAQGTPDNLSRIQRAFQDHHGLQCGFCTPGMVMAIADLLAHHPLETD 126

Query: 126 AEIRDGLSGNLCRCTGYVHIVDAVKMVKR 154
            +IR+GLSGN+CRCTGYVHI++AV+ + R
Sbjct: 127 EQIREGLSGNICRCTGYVHIIEAVRELAR 155


>ref|YP_004173204.1| carbon monoxide dehydrogenase small chain [Anaerolinea thermophila
           UNI-1]
 dbj|BAJ62604.1| carbon monoxide dehydrogenase small chain [Anaerolinea thermophila
           UNI-1]
          Length = 159

 Score =  204 bits (519), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 93/148 (62%), Positives = 116/148 (78%)

Query: 7   IKLVVNGTTYERAVEPRLLLSDFLRHTLGLTGTHVGCEHGVCGACTIMVDGDSIRACLML 66
           IK+ VNG  Y R VEPRLLLSDFLRH LGLTGTHVGCEHG+CGACTI+ DG+ +R+CL+ 
Sbjct: 6   IKVKVNGVEYVREVEPRLLLSDFLRHDLGLTGTHVGCEHGICGACTILFDGEPMRSCLIF 65

Query: 67  AVQADGCVVETVEGLGTVDQLNPLQQAFHSCHGLQCGFCTPGMLMTCTDMLKKYPLESDA 126
           AVQA+G  V TVE LGT ++++PLQ+AF   H LQCG+CTPG LMT    L+ +P  +D 
Sbjct: 66  AVQANGHEVTTVEALGTPEKMHPLQEAFQEKHALQCGYCTPGFLMTLKPFLETHPNPTDE 125

Query: 127 EIRDGLSGNLCRCTGYVHIVDAVKMVKR 154
           EIR+ + GNLCRCTGY HI++AVK+  +
Sbjct: 126 EIREAIDGNLCRCTGYEHIIEAVKLAAQ 153


>ref|YP_004336419.1| carbon-monoxide dehydrogenase [Pseudonocardia dioxanivorans CB1190]
 gb|AEA28566.1| Carbon-monoxide dehydrogenase (acceptor) [Pseudonocardia
           dioxanivorans CB1190]
          Length = 178

 Score =  202 bits (513), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 97/143 (67%), Positives = 110/143 (76%)

Query: 7   IKLVVNGTTYERAVEPRLLLSDFLRHTLGLTGTHVGCEHGVCGACTIMVDGDSIRACLML 66
           I + VNG  Y    EPR+ L+DFLRHT GLTGTH+GCEHGVCGACTI+VDG S RACLML
Sbjct: 27  ITVTVNGHAYTADCEPRVTLADFLRHTCGLTGTHLGCEHGVCGACTILVDGRSARACLML 86

Query: 67  AVQADGCVVETVEGLGTVDQLNPLQQAFHSCHGLQCGFCTPGMLMTCTDMLKKYPLESDA 126
           AVQADG  + TVEGL   + LNPLQ+AF   HGLQCGFCTPGMLMT T++L   P    A
Sbjct: 87  AVQADGATITTVEGLAAGNALNPLQEAFWDNHGLQCGFCTPGMLMTATELLADNPDPDAA 146

Query: 127 EIRDGLSGNLCRCTGYVHIVDAV 149
           E+R+GLSGNLCRCTGY  IV +V
Sbjct: 147 EVREGLSGNLCRCTGYDSIVRSV 169


>ref|YP_002521823.1| aldehyde oxidase small subunit [Thermomicrobium roseum DSM 5159]
 gb|ACM04714.1| aldehyde oxidase small subunit [Thermomicrobium roseum DSM 5159]
          Length = 164

 Score =  199 bits (507), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 96/150 (64%), Positives = 117/150 (78%), Gaps = 1/150 (0%)

Query: 2   SKNLDIKLVVNGTTYERAVEPRLLLSDFLRHTLGLTGTHVGCEHGVCGACTIMVDGDSIR 61
           S+   I++ VNG  YER VE RLLLSDFLRH LGLTGTHVGCEHGVCGACTI++DG+ +R
Sbjct: 6   SERRVIRVTVNGVPYEREVEARLLLSDFLRHELGLTGTHVGCEHGVCGACTILLDGEPVR 65

Query: 62  ACLMLAVQADGCVVETVEGLGTVD-QLNPLQQAFHSCHGLQCGFCTPGMLMTCTDMLKKY 120
           +CL+LAVQA G  +ETVEGL   + +L+PLQQAF   HGLQCG+CTPGMLM     L + 
Sbjct: 66  SCLLLAVQAHGHELETVEGLAPSERELHPLQQAFWEKHGLQCGYCTPGMLMVLKAFLAEN 125

Query: 121 PLESDAEIRDGLSGNLCRCTGYVHIVDAVK 150
           P  S+ EIR+ +SGNLCRCTGY +IV+A +
Sbjct: 126 PDPSEEEIREAISGNLCRCTGYQNIVEAAR 155