BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0168.p (330 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002825139.1| transcriptional regulator, putative [Sinorhi... 316 3e-84 ref|ZP_08628866.1| transcriptional regulator, HxlR family [Brady... 299 3e-79 ref|YP_002297405.1| transcriptional regulator, putative [Rhodosp... 209 4e-52 ref|YP_001682897.1| HxlR family transcriptional regulator [Caulo... 203 3e-50 ref|YP_003591972.1| HxlR family transcriptional regulator [Caulo... 202 6e-50 >ref|YP_002825139.1| transcriptional regulator, putative [Sinorhizobium fredii NGR234] gb|ACP24386.1| transcriptional regulator, putative [Sinorhizobium fredii NGR234] Length = 326 Score = 316 bits (810), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 157/305 (51%), Positives = 208/305 (68%), Gaps = 4/305 (1%) Query: 18 SVAKTVEILSDAWSFLVLRECFFGARRFEQYQRVLRLPRNTLIKRLNKLIDLGLLRRSSY 77 SV +T+EI+ D W+FL+LRE +FG RRF+++Q+ L +PR TL RL+ L+ ++ Sbjct: 26 SVRRTMEIVLDTWNFLILREAYFGVRRFDKFQQRLGIPRQTLSSRLSALVSNEIMS-VGR 84 Query: 78 SPSSTRFEYRFTDKGRDLYSTMLALLKYGDTWLSGDEPPPLQLIHKRCGKACSPVVVCSE 137 P+ +Y T++G+DL+ TML+L+++GD WL+G + PPLQL+HK CG AC PV VCSE Sbjct: 85 RPNEPGQQYFLTERGKDLFPTMLSLMEFGDKWLTGGKEPPLQLVHKSCGCACHPVTVCSE 144 Query: 138 CTSPIDPHDIQYRKGPGNFAHVHEPEERKRSRRPSDPQILERLRPCSVARTLQIIGDRWS 197 C P ++ R GPG A + R SRR SDP +LER+RPCSVARTL IIGDRWS Sbjct: 145 CLEPFTAREVAPRDGPG--AGYAPVDTRPTSRRSSDPTLLERVRPCSVARTLGIIGDRWS 202 Query: 198 FLLIREMFFGVRRFDEFQTNIGIASNILTDRLQRLTEYGVVEKRLYQMRPERFEYRFTAK 257 FL++RE +FGVRRF+E + N+GIA+NIL DRL RL + V K Y +RFEYRFT Sbjct: 203 FLILREGWFGVRRFEEMRENLGIATNILADRLARLVQADVFRKVPYG-SSDRFEYRFTEM 261 Query: 258 GRDLYGSMLVMRRWGDKWLFNGKAPLILRHRRCQHDFFAAVVCSECGGELSPYEVSYELR 317 G DLY MLVM WGD+WL GK P+ LRH+ C DF A VVCSEC +++ + Y LR Sbjct: 262 GLDLYKPMLVMMAWGDRWLAEGKPPMRLRHKTCGQDFSAIVVCSECRKQITVKDTDYILR 321 Query: 318 YTLDV 322 Y ++ Sbjct: 322 YPFNL 326 Score = 99.4 bits (246), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 54/134 (40%), Positives = 77/134 (57%), Gaps = 2/134 (1%) Query: 181 RPCSVARTLQIIGDRWSFLLIREMFFGVRRFDEFQTNIGIASNILTDRLQRLTEYGVVEK 240 R SV RT++I+ D W+FL++RE +FGVRRFD+FQ +GI L+ RL L ++ Sbjct: 23 RQSSVRRTMEIVLDTWNFLILREAYFGVRRFDKFQQRLGIPRQTLSSRLSALVSNEIMSV 82 Query: 241 RLYQMRPERFEYRFTAKGRDLYGSMLVMRRWGDKWLFNGK-APLILRHRRCQHDFFAAVV 299 P + +Y T +G+DL+ +ML + +GDKWL GK PL L H+ C V Sbjct: 83 GRRPNEPGQ-QYFLTERGKDLFPTMLSLMEFGDKWLTGGKEPPLQLVHKSCGCACHPVTV 141 Query: 300 CSECGGELSPYEVS 313 CSEC + EV+ Sbjct: 142 CSECLEPFTAREVA 155 >ref|ZP_08628866.1| transcriptional regulator, HxlR family [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08225.1| transcriptional regulator, HxlR family [Bradyrhizobiaceae bacterium SG-6C] Length = 321 Score = 299 bits (766), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 150/301 (49%), Positives = 195/301 (64%), Gaps = 4/301 (1%) Query: 18 SVAKTVEILSDAWSFLVLRECFFGARRFEQYQRVLRLPRNTLIKRLNKLIDLGLLRRSSY 77 S+A TV ILSDAW+FLV+RE FFGARRFE+++ L + R TL RL +L G+LR +SY Sbjct: 7 SIASTVGILSDAWAFLVIREAFFGARRFEEFRSGLEISRATLTDRLRRLTQEGILREASY 66 Query: 78 SPSSTRFEYRFTDKGRDLYSTMLALLKYGDTWLSGDEPPPLQLIHKRCGKACSPVVVCSE 137 S +S+R EY+ T G DLY T +AL+++GD WL + P LQLIH+ C P+V CS Sbjct: 67 SDTSSRVEYKLTKSGIDLYPTFMALMQFGDRWLDPTDGP-LQLIHEDCNCVSKPLVACSC 125 Query: 138 CTSPIDPHDIQYRKGPGNFAHVHEPEERKRSRRPSDPQILERLRPCSVARTLQIIGDRWS 197 C I ++ Y GPG E R R+RR +D R RP SV+R L++IGDRWS Sbjct: 126 CQKKITAREVTYLDGPGAGVVGAETNAR-RTRRTADD--FMRGRPSSVSRALEVIGDRWS 182 Query: 198 FLLIREMFFGVRRFDEFQTNIGIASNILTDRLQRLTEYGVVEKRLYQMRPERFEYRFTAK 257 FL+IRE F+G RFD+FQ + IASNILTDRL RL + GV +KR YQ PERFEY T Sbjct: 183 FLIIREAFYGAARFDQFQAELKIASNILTDRLSRLVDRGVFKKRKYQSAPERFEYLLTPM 242 Query: 258 GRDLYGSMLVMRRWGDKWLFNGKAPLILRHRRCQHDFFAAVVCSECGGELSPYEVSYELR 317 G DL+G +++M WGD+W G+ P++LRH C F VVC+ CG + Y + Y +R Sbjct: 243 GADLHGPIMMMMAWGDRWRAGGEPPMLLRHTVCGKIFTPTVVCNRCGKPIHAYAMKYRMR 302 Query: 318 Y 318 Y Sbjct: 303 Y 303 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 56/134 (41%), Positives = 82/134 (61%) Query: 181 RPCSVARTLQIIGDRWSFLLIREMFFGVRRFDEFQTNIGIASNILTDRLQRLTEYGVVEK 240 R CS+A T+ I+ D W+FL+IRE FFG RRF+EF++ + I+ LTDRL+RLT+ G++ + Sbjct: 4 RKCSIASTVGILSDAWAFLVIREAFFGARRFEEFRSGLEISRATLTDRLRRLTQEGILRE 63 Query: 241 RLYQMRPERFEYRFTAKGRDLYGSMLVMRRWGDKWLFNGKAPLILRHRRCQHDFFAAVVC 300 Y R EY+ T G DLY + + + ++GD+WL PL L H C V C Sbjct: 64 ASYSDTSSRVEYKLTKSGIDLYPTFMALMQFGDRWLDPTDGPLQLIHEDCNCVSKPLVAC 123 Query: 301 SECGGELSPYEVSY 314 S C +++ EV+Y Sbjct: 124 SCCQKKITAREVTY 137 >ref|YP_002297405.1| transcriptional regulator, putative [Rhodospirillum centenum SW] gb|ACI98592.1| transcriptional regulator, putative [Rhodospirillum centenum SW] Length = 321 Score = 209 bits (533), Expect = 4e-52, Method: Compositional matrix adjust. Identities = 111/302 (36%), Positives = 170/302 (56%), Gaps = 10/302 (3%) Query: 18 SVAKTVEILSDAWSFLVLRECFFGARRFEQYQRVLRLPRNTLIKRLNKLIDLGLLRRSSY 77 S+ + ++++ D + L+L F G R+F+ +QR L R L RL +L++ GLL + +Y Sbjct: 11 SITRALDVIGDHAALLILECAFLGVRKFDAFQRRTGLLRPLLSNRLKQLVESGLLTKVAY 70 Query: 78 SPSSTRFEYRFTDKGRDLYSTMLALLKYGDTWLSGDEPPPLQLIHKRCGKACSPVVVCSE 137 R+EYR T+KGR LY L ++++ W L+L+H CG PV VC+ Sbjct: 71 CERPLRYEYRLTEKGRGLYPAALMMVRWERRWAPLPRRTELRLVHALCGCEADPVPVCTA 130 Query: 138 CTSPIDPHDIQYRKGPG-NFAHVHEPEERKRSRRP-SDPQILERLRPCSVARTLQIIGDR 195 C ID ++++R+GPG H R+++R P D +L + L+++GDR Sbjct: 131 CGGEIDAREVEWREGPGVGLVLPHYDRRRRQTRMPEGDAALL-------LDTVLRVVGDR 183 Query: 196 WSFLLIREMFFGVRRFDEFQTNIGIASNILTDRLQRLTEYGVVEKRLYQMRPERFEYRFT 255 WS L++R F G+ R+DE + IA+NIL DRL+ L +G + KR YQ P R EYR T Sbjct: 184 WSSLILRSGFMGLTRYDEIREETQIATNILADRLRWLCAHGFLVKRTYQESPSRHEYRLT 243 Query: 256 AKGRDLYGSMLVMRRWGDKWLFNGKA-PLILRHRRCQHDFFAAVVCSECGGELSPYEVSY 314 K RDLY + ++ +WGD+W + + P++L HRRC AVVCS C L +V + Sbjct: 244 EKARDLYPVLTMLLQWGDRWYASPEGPPILLTHRRCGAPLEPAVVCSVCKEPLHIDQVRF 303 Query: 315 EL 316 E+ Sbjct: 304 EM 305 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 55/136 (40%), Positives = 79/136 (58%), Gaps = 1/136 (0%) Query: 180 LRPCSVARTLQIIGDRWSFLLIREMFFGVRRFDEFQTNIGIASNILTDRLQRLTEYGVVE 239 +R CS+ R L +IGD + L++ F GVR+FD FQ G+ +L++RL++L E G++ Sbjct: 7 VRACSITRALDVIGDHAALLILECAFLGVRKFDAFQRRTGLLRPLLSNRLKQLVESGLLT 66 Query: 240 KRLYQMRPERFEYRFTAKGRDLYGSMLVMRRWGDKWL-FNGKAPLILRHRRCQHDFFAAV 298 K Y RP R+EYR T KGR LY + L+M RW +W + L L H C + Sbjct: 67 KVAYCERPLRYEYRLTEKGRGLYPAALMMVRWERRWAPLPRRTELRLVHALCGCEADPVP 126 Query: 299 VCSECGGELSPYEVSY 314 VC+ CGGE+ EV + Sbjct: 127 VCTACGGEIDAREVEW 142 >ref|YP_001682897.1| HxlR family transcriptional regulator [Caulobacter sp. K31] gb|ABZ70399.1| transcriptional regulator, HxlR family [Caulobacter sp. K31] Length = 318 Score = 203 bits (516), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 100/291 (34%), Positives = 158/291 (54%), Gaps = 5/291 (1%) Query: 18 SVAKTVEILSDAWSFLVLRECFFGARRFEQYQRVLRLPRNTLIKRLNKLIDLGLLRRSSY 77 S A+ + ++ D W+ L L F G RF+ + ++ + R+ L+ RL +L G+L + Y Sbjct: 24 SAARALNLIGDRWTLLTLYAAFMGQTRFDGFVKLTGMARSLLVDRLGRLEAAGVLEKRPY 83 Query: 78 SPSSTRFEYRFTDKGRDLYSTMLALLKYGDTWLSGDEPPPLQLIHKRCGKACSPVVVCSE 137 R Y T G+DL+ L +L++ W + P +++H+ CG+ +VC Sbjct: 84 QDRPVRHGYHLTAMGKDLFDAALMILRWETRWHYDETSPSHRIVHETCGQPLVAELVCET 143 Query: 138 CTSPIDPHDIQYRKGPGNFAHVHEPEERKRSRRPSDPQILERLRPCSVARTLQIIGDRWS 197 C P++ D+ GPG EP R R +R S + L P + R++ ++GDRW+ Sbjct: 144 CQRPVEAQDVDLIPGPGAGL---EPAPRARLQRRSTAEAATPLEPM-LERSIAVLGDRWT 199 Query: 198 FLLIREMFFGVRRFDEFQTNIGIASNILTDRLQRLTEYGVVEKRLYQMRPERFEYRFTAK 257 L+ F+G RRF + + +G+A+NIL DRL RL E G++E+RLYQ RPER+EYR T + Sbjct: 200 AHLLAAAFYGRRRFKDLRAELGVATNILADRLARLVELGMLERRLYQARPERWEYRLTEQ 259 Query: 258 GRDLYGSMLVMRRWGDKWLFN-GKAPLILRHRRCQHDFFAAVVCSECGGEL 307 RDL+ ++ + WGD+WL P +L H+ C AV C C G + Sbjct: 260 ARDLFPLIVALMAWGDRWLAGEAGPPEVLVHKPCGAVLQTAVRCGACHGAV 310 Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 53/133 (39%), Positives = 74/133 (55%), Gaps = 1/133 (0%) Query: 172 SDPQILERLRPCSVARTLQIIGDRWSFLLIREMFFGVRRFDEFQTNIGIASNILTDRLQR 231 + P + +R S AR L +IGDRW+ L + F G RFD F G+A ++L DRL R Sbjct: 12 AAPSKVSGVRASSAARALNLIGDRWTLLTLYAAFMGQTRFDGFVKLTGMARSLLVDRLGR 71 Query: 232 LTEYGVVEKRLYQMRPERFEYRFTAKGRDLYGSMLVMRRWGDKWLFNGKAPLI-LRHRRC 290 L GV+EKR YQ RP R Y TA G+DL+ + L++ RW +W ++ +P + H C Sbjct: 72 LEAAGVLEKRPYQDRPVRHGYHLTAMGKDLFDAALMILRWETRWHYDETSPSHRIVHETC 131 Query: 291 QHDFFAAVVCSEC 303 A +VC C Sbjct: 132 GQPLVAELVCETC 144 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 46/123 (37%), Positives = 72/123 (58%) Query: 21 KTVEILSDAWSFLVLRECFFGARRFEQYQRVLRLPRNTLIKRLNKLIDLGLLRRSSYSPS 80 +++ +L D W+ +L F+G RRF+ + L + N L RL +L++LG+L R Y Sbjct: 189 RSIAVLGDRWTAHLLAAAFYGRRRFKDLRAELGVATNILADRLARLVELGMLERRLYQAR 248 Query: 81 STRFEYRFTDKGRDLYSTMLALLKYGDTWLSGDEPPPLQLIHKRCGKACSPVVVCSECTS 140 R+EYR T++ RDL+ ++AL+ +GD WL+G+ PP L+HK CG V C C Sbjct: 249 PERWEYRLTEQARDLFPLIVALMAWGDRWLAGEAGPPEVLVHKPCGAVLQTAVRCGACHG 308 Query: 141 PID 143 +D Sbjct: 309 AVD 311 >ref|YP_003591972.1| HxlR family transcriptional regulator [Caulobacter segnis ATCC 21756] gb|ADG09354.1| transcriptional regulator, HxlR family [Caulobacter segnis ATCC 21756] Length = 313 Score = 202 bits (514), Expect = 6e-50, Method: Compositional matrix adjust. Identities = 109/294 (37%), Positives = 156/294 (53%), Gaps = 10/294 (3%) Query: 18 SVAKTVEILSDAWSFLVLRECFFGARRFEQYQRVLRLPRNTLIKRLNKLIDLGLLRRSSY 77 S A+ + ++ D W+ L+L F G +RF+ + + + R+ L RL +L G+L R Y Sbjct: 18 SAARALNLIGDRWTLLILYAAFMGVKRFDGFAAMTGVARSLLTDRLKRLETAGVLARVQY 77 Query: 78 SPSSTRFEYRFTDKGRDLYSTMLALLKYGDTWLSGDEPPPLQLIHKRCGKACSPVVVCSE 137 R EYR T GRDLY + L LL + W E P Q++H+ CG+ PV+VC Sbjct: 78 QARPPRHEYRLTPMGRDLYDSALMLLGWEMRWRFDPECPSHQIVHQTCGQPLRPVLVCKA 137 Query: 138 CTSPIDPHDIQYRKGPGNFAHVHEPEERKRSRRPSD---PQILERLRPCSVARTLQIIGD 194 C + D+ GPG P R R D P + L R ++++GD Sbjct: 138 CGEAVKVRDVTVSPGPGAGLEPAPPARHSRRARHDDVGGPSLHPMLE-----RGIEVLGD 192 Query: 195 RWSFLLIREMFFGVRRFDEFQTNIGIASNILTDRLQRLTEYGVVEKRLYQMRPERFEYRF 254 RW+ ++ F+G RRF +FQ + +ASNILTDRL RL E G++E+ YQ RPER+EYR Sbjct: 193 RWTAHVLAAAFYGHRRFTDFQAELKVASNILTDRLGRLVERGMLERVRYQERPERWEYRL 252 Query: 255 TAKGRDLYGSMLVMRRWGDKWLFNGK-APLILRHRRCQHDFFAAVVCSECGGEL 307 T +GRDL+ + + WGD+WL + +P IL H RC V C C G + Sbjct: 253 TREGRDLFPLIAALMAWGDRWLAGSEGSPEILTH-RCGARLEPVVRCGACEGAV 305 Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 56/135 (41%), Positives = 79/135 (58%), Gaps = 1/135 (0%) Query: 180 LRPCSVARTLQIIGDRWSFLLIREMFFGVRRFDEFQTNIGIASNILTDRLQRLTEYGVVE 239 +R S AR L +IGDRW+ L++ F GV+RFD F G+A ++LTDRL+RL GV+ Sbjct: 14 VRRSSAARALNLIGDRWTLLILYAAFMGVKRFDGFAAMTGVARSLLTDRLKRLETAGVLA 73 Query: 240 KRLYQMRPERFEYRFTAKGRDLYGSMLVMRRWGDKWLFNGKAPL-ILRHRRCQHDFFAAV 298 + YQ RP R EYR T GRDLY S L++ W +W F+ + P + H+ C + Sbjct: 74 RVQYQARPPRHEYRLTPMGRDLYDSALMLLGWEMRWRFDPECPSHQIVHQTCGQPLRPVL 133 Query: 299 VCSECGGELSPYEVS 313 VC CG + +V+ Sbjct: 134 VCKACGEAVKVRDVT 148 Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 51/123 (41%), Positives = 71/123 (57%), Gaps = 1/123 (0%) Query: 21 KTVEILSDAWSFLVLRECFFGARRFEQYQRVLRLPRNTLIKRLNKLIDLGLLRRSSYSPS 80 + +E+L D W+ VL F+G RRF +Q L++ N L RL +L++ G+L R Y Sbjct: 185 RGIEVLGDRWTAHVLAAAFYGHRRFTDFQAELKVASNILTDRLGRLVERGMLERVRYQER 244 Query: 81 STRFEYRFTDKGRDLYSTMLALLKYGDTWLSGDEPPPLQLIHKRCGKACSPVVVCSECTS 140 R+EYR T +GRDL+ + AL+ +GD WL+G E P L H RCG PVV C C Sbjct: 245 PERWEYRLTREGRDLFPLIAALMAWGDRWLAGSEGSPEILTH-RCGARLEPVVRCGACEG 303 Query: 141 PID 143 +D Sbjct: 304 AVD 306