BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0161.p (402 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_08628867.1| leucine-, isoleucine-, valine-, threonine-, a... 602 e-170 ref|YP_002825149.1| putative ABC branched-chain amino transporte... 563 e-158 gb|AEJ26831.1| Leucine- isoleucine- valine- threonine- and alani... 540 e-151 ref|YP_583792.1| ABC transporter periplasmic protein [Cupriavidu... 491 e-137 ref|YP_298088.1| ureA/short-chain amide ABC transporter [Ralston... 488 e-136 >ref|ZP_08628867.1| leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein [Bradyrhizobiaceae bacterium SG-6C] gb|EGP08226.1| leucine-, isoleucine-, valine-, threonine-, and alanine-binding protein [Bradyrhizobiaceae bacterium SG-6C] Length = 398 Score = 602 bits (1553), Expect = e-170, Method: Compositional matrix adjust. Identities = 274/374 (73%), Positives = 325/374 (86%) Query: 29 LRIGVMTDLSGQFSHEAGQGAVTAVKMAVQDFGGSVLGRPIEVLVNDHQNKPDIAASKAR 88 +RIGVMTD+SGQFSHE+G+G+VTAVKMAV+DFGG+VLG+ IEV+V DHQN+ ++A +KAR Sbjct: 24 VRIGVMTDMSGQFSHESGEGSVTAVKMAVEDFGGTVLGKKIEVIVADHQNRNEVAIAKAR 83 Query: 89 EWFDTQNVKMINNLINSGVAISVMNVAKEKNGIAIINGSGSSRITGDACTPNSIHYAYDT 148 EW+D V MI NLINS +A++V NVA+EKN IAI+NGSGSSR+TGD+CTPNSIHYAYDT Sbjct: 84 EWYDVGKVDMIANLINSSIALAVTNVAQEKNRIAIVNGSGSSRLTGDSCTPNSIHYAYDT 143 Query: 149 YALANGTGNAIIKQGGDSWFFLTADYAFGHSLEADTSAAVKAKGGKVIGAVRYPLNASDH 208 YALA GTG A+IK+G +SW+FLTADYAFGH+LE DT+ VKA GG V+G++RYP++ DH Sbjct: 144 YALAQGTGKALIKEGLNSWYFLTADYAFGHALEGDTANVVKANGGNVLGSIRYPIDTPDH 203 Query: 209 SSFLLQAQQSKAKVVALAGSGTGFINAVKSAHEFGVTQSGKQILAGLLVWITDVDAMGLE 268 SSFLLQAQ SKAKVVA+AGSGT FINAVKSA +FG+T GKQ +AGLLVWITD+D+MGL+ Sbjct: 204 SSFLLQAQASKAKVVAVAGSGTTFINAVKSAKDFGLTDGGKQTIAGLLVWITDIDSMGLK 263 Query: 269 VAQGLTLTNGFYWDRDEETRKWSRRFFALMKRMPTMGDAGDYSSTLHYLQAVKAAGTDDT 328 AQGL LTNGFYWDRDEETR +S+RFFA MKRMP MGDAGDYSST+HYL A+KAAGTDD Sbjct: 264 TAQGLVLTNGFYWDRDEETRAFSKRFFAKMKRMPHMGDAGDYSSTMHYLNAIKAAGTDDA 323 Query: 329 AAVMAKMKATPINDMFAKNGKIRADGRMVHDMYVYQVKKPSESKYPWDYYKYIATIPADQ 388 VMAKM+ P+ND FAKNG++R DGR VHDMYVY+VKKPSESKY WDYYK A IP ++ Sbjct: 324 KTVMAKMREMPVNDFFAKNGRVREDGRFVHDMYVYEVKKPSESKYAWDYYKLRAVIPGNE 383 Query: 389 AYRPLSEGGCPLVK 402 A+RPLSE CPLVK Sbjct: 384 AFRPLSESKCPLVK 397 >ref|YP_002825149.1| putative ABC branched-chain amino transporter, periplasmic binding protein [Sinorhizobium fredii NGR234] gb|ACP24396.1| putative ABC branched-chain amino transporter, periplasmic binding protein [Sinorhizobium fredii NGR234] Length = 402 Score = 563 bits (1451), Expect = e-158, Method: Compositional matrix adjust. Identities = 268/401 (66%), Positives = 323/401 (80%), Gaps = 2/401 (0%) Query: 2 NKLVKMAPAALLMAMAMNGVMAQAAKPLRIGVMTDLSGQFSHEAGQGAVTAVKMAVQDFG 61 NKL+ ++ A + AM M+ AQ A P+RIGV+TD+SGQFSHEAG+G++TAVKMAV+DFG Sbjct: 3 NKLMLLSCVAAVGAMTMSA-GAQDAAPVRIGVLTDVSGQFSHEAGEGSITAVKMAVEDFG 61 Query: 62 GSVLGRPIEVLVNDHQNKPDIAASKAREWFDTQNVKMINNLINSGVAISVMNVAKEKNGI 121 G VL RP+EV+V DHQNKP++A S AREW+++Q V MINNLINSG+A++V VAK+++ I Sbjct: 62 GKVLDRPLEVVVADHQNKPEVAVSTAREWYESQGVTMINNLINSGIALAVTQVAKDEDRI 121 Query: 122 AIINGSGSSRITGDACTPNSIHYAYDTYALANGTGNAIIKQGGDSWFFLTADYAFGHSLE 181 AI+NGSGSSR+T D CTPNSIHY+YDTYALANGT N +I QG +WFFLTADYAFGH+LE Sbjct: 122 AIVNGSGSSRLTNDGCTPNSIHYSYDTYALANGTANQLILQGMKNWFFLTADYAFGHALE 181 Query: 182 ADTSAAVKAKGGKVIGAVRYPLNASDHSSFLLQAQQSKAKVVALAGSGTGFINAVKSAHE 241 AD + VK G+V G+VRYP+ SDHS+F+LQAQ S A+VVA+AGSGT FINAVKSA E Sbjct: 182 ADATQIVKDNDGEVSGSVRYPIETSDHSAFMLQAQASPAQVVAMAGSGTTFINAVKSAAE 241 Query: 242 FGVTQSGKQILAGLLVWITDVDAMGLEVAQGLTLTNGFYWDRDEETRKWSRRFFALMKRM 301 FG+ SGK + AGLLVW TDV ++GLE AQG+ LTN FYWDRD+ TR +S+RF + R Sbjct: 242 FGLAASGKTV-AGLLVWDTDVHSLGLETAQGMILTNAFYWDRDDATRAFSKRFEERVGRP 300 Query: 302 PTMGDAGDYSSTLHYLQAVKAAGTDDTAAVMAKMKATPINDMFAKNGKIRADGRMVHDMY 361 P MGDAGDYSST+HYL+AV+AAGT D VMAKM+ TPIND FAKNGKIR DGRMVHDMY Sbjct: 301 PHMGDAGDYSSTMHYLKAVEAAGTTDAQKVMAKMRETPINDFFAKNGKIREDGRMVHDMY 360 Query: 362 VYQVKKPSESKYPWDYYKYIATIPADQAYRPLSEGGCPLVK 402 VYQVK P+ES WD K + TI D A+RPLSE CPLVK Sbjct: 361 VYQVKTPAESTGEWDILKLVTTISGDDAFRPLSESQCPLVK 401 >gb|AEJ26831.1| Leucine- isoleucine- valine- threonine- and alanine-binding protein [Paracoccus denitrificans SD1] Length = 408 Score = 540 bits (1391), Expect = e-151, Method: Compositional matrix adjust. Identities = 252/375 (67%), Positives = 303/375 (80%), Gaps = 1/375 (0%) Query: 28 PLRIGVMTDLSGQFSHEAGQGAVTAVKMAVQDFGGSVLGRPIEVLVNDHQNKPDIAASKA 87 P+RIGV+TD+SGQFSHEAG+G+V AVKMAV+DFGG VLGR IEVLV+DHQNKP++A S A Sbjct: 33 PVRIGVLTDMSGQFSHEAGEGSVAAVKMAVEDFGGEVLGRKIEVLVSDHQNKPELAVSTA 92 Query: 88 REWFDTQNVKMINNLINSGVAISVMNVAKEKNGIAIINGSGSSRITGDACTPNSIHYAYD 147 +EW+++ V +I NLINSG+A++V VA E +GIAI+NGSGSS++TG+ CTP+SIHYAYD Sbjct: 93 QEWYESGGVSLITNLINSGIALAVAGVAAEHDGIAIVNGSGSSKLTGEGCTPHSIHYAYD 152 Query: 148 TYALANGTGNAIIKQGGDSWFFLTADYAFGHSLEADTSAAVKAKGGKVIGAVRYPLNASD 207 TYALA GT + QG +WFFLTADYAFGH+LEAD SA VK+ GG V G++RYP+ +D Sbjct: 153 TYALAVGTARELANQGHKNWFFLTADYAFGHALEADASAVVKSLGGTVEGSIRYPIETTD 212 Query: 208 HSSFLLQAQQSKAKVVALAGSGTGFINAVKSAHEFGVTQSGKQILAGLLVWITDVDAMGL 267 HSSF+LQA S A VVA+AGSGT FINAVKSA EFGV SGK + AGLLVW+TD ++GL Sbjct: 213 HSSFMLQAMASPADVVAIAGSGTTFINAVKSAGEFGVASSGKTV-AGLLVWLTDTHSLGL 271 Query: 268 EVAQGLTLTNGFYWDRDEETRKWSRRFFALMKRMPTMGDAGDYSSTLHYLQAVKAAGTDD 327 + A+G+ LTN FYWDRD+ETR +S RF + R P MGDAGDYSST+HYL+AV+AAG+ D Sbjct: 272 QAAEGMILTNAFYWDRDDETRAFSARFAERVGRPPHMGDAGDYSSTMHYLKAVEAAGSTD 331 Query: 328 TAAVMAKMKATPINDMFAKNGKIRADGRMVHDMYVYQVKKPSESKYPWDYYKYIATIPAD 387 AVMAKM+ TP+ND FAK G IR DGRMVHDMYVYQVK P ES WD YK + TIP D Sbjct: 332 ADAVMAKMRETPVNDFFAKGGVIREDGRMVHDMYVYQVKSPEESTSEWDVYKLVNTIPGD 391 Query: 388 QAYRPLSEGGCPLVK 402 +AYRPLSE C LVK Sbjct: 392 EAYRPLSESTCRLVK 406 >ref|YP_583792.1| ABC transporter periplasmic protein [Cupriavidus metallidurans CH34] gb|ABF08523.1| ABC-type transporter, periplasmic component; possible urea/short-chain amide ABC transporter precursor up with Au [Cupriavidus metallidurans CH34] Length = 412 Score = 491 bits (1264), Expect = e-137, Method: Compositional matrix adjust. Identities = 223/374 (59%), Positives = 293/374 (78%) Query: 29 LRIGVMTDLSGQFSHEAGQGAVTAVKMAVQDFGGSVLGRPIEVLVNDHQNKPDIAASKAR 88 ++IG++ D+SG +S G+G+ A +MA+ DFGG VLG+ IE++V DHQNK DIAA+KAR Sbjct: 38 VKIGLLLDMSGLYSDVTGRGSAAAAQMAIDDFGGKVLGKKIELVVVDHQNKADIAANKAR 97 Query: 89 EWFDTQNVKMINNLINSGVAISVMNVAKEKNGIAIINGSGSSRITGDACTPNSIHYAYDT 148 EWFD +V I ++ S A++V++VAK+KN I + +G G+ RIT D CTP S+HYAYDT Sbjct: 98 EWFDQDHVDAILDVAASAPALAVLDVAKQKNKIVVFSGPGTERITNDLCTPVSVHYAYDT 157 Query: 149 YALANGTGNAIIKQGGDSWFFLTADYAFGHSLEADTSAAVKAKGGKVIGAVRYPLNASDH 208 YALAN T A++++GG +WFFLTADYAFGH+L+ +A V GG+V+GA R+PLN SD Sbjct: 158 YALANTTARAMVERGGKTWFFLTADYAFGHTLQQSATAVVNEAGGRVLGAARHPLNTSDF 217 Query: 209 SSFLLQAQQSKAKVVALAGSGTGFINAVKSAHEFGVTQSGKQILAGLLVWITDVDAMGLE 268 +S+LLQAQ SKA+VV LA +G +NA+K+A EFG+T++G Q LAGLL++I D+ A+GL+ Sbjct: 218 ASYLLQAQASKAQVVGLANAGGDTVNAIKAASEFGLTRNGNQKLAGLLLYINDIHAIGLK 277 Query: 269 VAQGLTLTNGFYWDRDEETRKWSRRFFALMKRMPTMGDAGDYSSTLHYLQAVKAAGTDDT 328 AQGL LT FYWD ++ TR WSRR+F +K+MP M AG YSS HYL+AV+A GTD+T Sbjct: 278 TAQGLVLTEAFYWDMNDATRAWSRRYFEKVKKMPNMSQAGVYSSVSHYLKAVQATGTDET 337 Query: 329 AAVMAKMKATPINDMFAKNGKIRADGRMVHDMYVYQVKKPSESKYPWDYYKYIATIPADQ 388 AAVM +MKATPIND FAKNG+IR DGRMVHDMY+++VKKP ESKYPWDYYK +AT+P DQ Sbjct: 338 AAVMKQMKATPINDFFAKNGRIREDGRMVHDMYLFEVKKPEESKYPWDYYKLLATVPGDQ 397 Query: 389 AYRPLSEGGCPLVK 402 A+ P S+ CPL+K Sbjct: 398 AFIPPSKSQCPLLK 411 >ref|YP_298088.1| ureA/short-chain amide ABC transporter [Ralstonia eutropha JMP134] gb|AAZ63244.1| amino acid/amide ABC transporter substrate-binding protein, HAAT family [Ralstonia eutropha JMP134] Length = 413 Score = 488 bits (1257), Expect = e-136, Method: Compositional matrix adjust. Identities = 220/374 (58%), Positives = 295/374 (78%) Query: 29 LRIGVMTDLSGQFSHEAGQGAVTAVKMAVQDFGGSVLGRPIEVLVNDHQNKPDIAASKAR 88 ++IG++ D+SG ++ G+G+ TA +MA+ DFGG VLG+ IE++V DHQNK DIAA+KAR Sbjct: 39 VKIGMLLDMSGLYADVTGRGSATAAQMAIDDFGGKVLGKKIELVVVDHQNKADIAANKAR 98 Query: 89 EWFDTQNVKMINNLINSGVAISVMNVAKEKNGIAIINGSGSSRITGDACTPNSIHYAYDT 148 EWFDT +V I ++ S A++V++VAK+KN I + +G GS RIT D CTP S+HYAYDT Sbjct: 99 EWFDTGHVDAILDVAASAPALAVLDVAKQKNHIVVFSGPGSERITNDLCTPVSVHYAYDT 158 Query: 149 YALANGTGNAIIKQGGDSWFFLTADYAFGHSLEADTSAAVKAKGGKVIGAVRYPLNASDH 208 YALAN T A++++GG +WFFLTADYAFGH+L+ +A + GGKV+GA R+P+ ASD Sbjct: 159 YALANTTARAMVQRGGKTWFFLTADYAFGHTLQDSATAVINEAGGKVLGAARHPIGASDF 218 Query: 209 SSFLLQAQQSKAKVVALAGSGTGFINAVKSAHEFGVTQSGKQILAGLLVWITDVDAMGLE 268 +S+LLQAQ SKA+VV LA +G +NA+K+A EFG+T++G Q +AGLL++I D+ A+GL+ Sbjct: 219 ASYLLQAQASKAQVVGLANAGGDTVNAIKAASEFGLTRNGAQRMAGLLLYINDIHAIGLK 278 Query: 269 VAQGLTLTNGFYWDRDEETRKWSRRFFALMKRMPTMGDAGDYSSTLHYLQAVKAAGTDDT 328 A GL LT FYWD ++ TR WSRR+F +K+MP M AG YSS +HYL+AV+AAGTD+T Sbjct: 279 TASGLVLTEAFYWDMNDATRAWSRRYFEKVKKMPNMSQAGAYSSVMHYLKAVQAAGTDET 338 Query: 329 AAVMAKMKATPINDMFAKNGKIRADGRMVHDMYVYQVKKPSESKYPWDYYKYIATIPADQ 388 AAVM KMK+ PIND FAKNG+IR DGRM+HDMY+++VK P+ESKYPWDYYK +AT+P DQ Sbjct: 339 AAVMKKMKSMPINDFFAKNGRIREDGRMIHDMYLFEVKSPAESKYPWDYYKVLATVPGDQ 398 Query: 389 AYRPLSEGGCPLVK 402 A+ P S+ CPL+K Sbjct: 399 AFMPASKSQCPLLK 412