BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0159.p (408 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002355032.1| ABC transporter substrate-binding protein [T... 500 e-139 gb|EFV84730.1| hypothetical protein HMPREF0005_04571 [Achromobac... 500 e-139 ref|YP_001861076.1| extracellular ligand-binding receptor [Burkh... 499 e-139 ref|YP_158961.1| LivK, ABC-type branched-chain amino acid transp... 498 e-139 ref|YP_931624.1| ABC transporter substrate-binding protein [Azoa... 496 e-138 >ref|YP_002355032.1| ABC transporter substrate-binding protein [Thauera sp. MZ1T] gb|ACK54136.1| ABC transporter substrate-binding protein [Thauera sp. MZ1T] Length = 404 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 241/407 (59%), Positives = 306/407 (75%), Gaps = 5/407 (1%) Query: 3 KFKLLKLAACIAGVFACTTQGMAQTNKISDGAVKIGVLTDMSSVYSESGGQGSIIAARMA 62 + K L AC A FA + A + +IS VKIGVLTDMS YS+ G G+++A +MA Sbjct: 2 QMKKLTTLAC-AAAFAMLSG--AASAQISGNTVKIGVLTDMSGTYSDLAGAGAVLATQMA 58 Query: 63 VEDFGGKVLGA-PITVITADHQNKADIGASKAREWIDVEKVDMITDVITSSVALAVARVT 121 +EDF + A + +++ADHQNKADI ++KAREW + E VD T+++T+S ALAV ++ Sbjct: 59 IEDFIAEAKPAFKVEMVSADHQNKADIASNKAREWFEREGVDTATELVTTSTALAVMKIA 118 Query: 122 NDKKRVNMTVGAGTTRLTNEECSPYMVHYAYDTYALANGTAKTVTQQGGDTWFFMTADYV 181 + RV + G +T +TNE+C+ VHY YDTYALANGTAK VTQQGG+TWFF+TADY Sbjct: 119 KEMNRVALMSGPASTPITNEQCNDVTVHYTYDTYALANGTAKAVTQQGGNTWFFLTADYA 178 Query: 182 FGTSLEKDASDVVVANGGKVLGSVRHPLNASDFSSFLLQAQASKAKIIGLANAGNDMINT 241 FG +LEKD+S VV ANGGKVLGSVRHP ASDFSSFLLQAQAS AKIIGLANAG D N Sbjct: 179 FGQALEKDSSAVVTANGGKVLGSVRHPFPASDFSSFLLQAQASGAKIIGLANAGADTTNA 238 Query: 242 LKGAREFGLAKGGQRFAGMLVNINDTHNMGLDVAQGMLLTEGFYWDRNEETRKFSRRYFA 301 +K A EFG+ Q AG+L+ I+D H++GL QGM LT GFYWD +++TR +S+R+F Sbjct: 239 IKQAAEFGVTP-KQSLAGLLMFISDVHSLGLQATQGMYLTTGFYWDLDDQTRAWSKRFFE 297 Query: 302 KMKQMPNMIHAGVYSAVTNYLKAIEATGTDDADQVMAKLKSTKINDFYATNGVIREDGRM 361 K K+MP M+ AG YS+V +YL+A++ATGTD+A +VMA++K+T I DF+ NG IREDGRM Sbjct: 298 KQKRMPTMVQAGQYSSVLHYLRAVQATGTDEAGKVMAQMKATPIKDFFGKNGRIREDGRM 357 Query: 362 VHDMYLVEVKTPAESKYPWDYYRIKRTIPAAEAFIPLSKSKCQFVKK 408 VHDMYL +VKTPAESKYPWDYY I++TIPA EAF PL++SKC VKK Sbjct: 358 VHDMYLAQVKTPAESKYPWDYYHIRQTIPAEEAFQPLAQSKCPLVKK 404 >gb|EFV84730.1| hypothetical protein HMPREF0005_04571 [Achromobacter xylosoxidans C54] Length = 405 Score = 500 bits (1287), Expect = e-139, Method: Compositional matrix adjust. Identities = 232/400 (58%), Positives = 302/400 (75%), Gaps = 3/400 (0%) Query: 10 AACIAGVFACTTQGMAQTNK--ISDGAVKIGVLTDMSSVYSESGGQGSIIAARMAVEDFG 67 AAC A +F MAQT ISD V++G++ DMS +Y++ G+GS AA+MA++DFG Sbjct: 3 AACGATLFVGAAS-MAQTTPAAISDDIVRLGLILDMSGIYADVTGKGSATAAQMAIDDFG 61 Query: 68 GKVLGAPITVITADHQNKADIGASKAREWIDVEKVDMITDVITSSVALAVARVTNDKKRV 127 GKVLG I ++ DHQNKADI A++AREW D +KVD I DV S+ ALAV V +KK++ Sbjct: 62 GKVLGRKIDLMVVDHQNKADIAAARAREWYDTQKVDAILDVAGSAPALAVLEVAREKKKI 121 Query: 128 NMTVGAGTTRLTNEECSPYMVHYAYDTYALANGTAKTVTQQGGDTWFFMTADYVFGTSLE 187 + G GT R+TN+ CSPY VHY YDT++LAN TA+ +GG +W+F+TADY FG +L+ Sbjct: 122 VVFSGPGTERITNDLCSPYSVHYTYDTWSLANTTARATVDRGGKSWYFLTADYAFGHTLQ 181 Query: 188 KDASDVVVANGGKVLGSVRHPLNASDFSSFLLQAQASKAKIIGLANAGNDMINTLKGARE 247 A++VV A GG VLG+ RHP+ SDF+S+LLQAQAS+A+I+GLANAG D +N +K ARE Sbjct: 182 ASATEVVKARGGTVLGAARHPIGTSDFASYLLQAQASRAQIVGLANAGGDTVNAIKAARE 241 Query: 248 FGLAKGGQRFAGMLVNINDTHNMGLDVAQGMLLTEGFYWDRNEETRKFSRRYFAKMKQMP 307 FGL + GQ+ AG+L+ IND H +GLD A G++LTE FYWD N++TR +S+RY+ K+K+MP Sbjct: 242 FGLTQSGQKMAGLLLYINDIHAIGLDAAAGLMLTEAFYWDMNDQTRAWSQRYYDKLKKMP 301 Query: 308 NMIHAGVYSAVTNYLKAIEATGTDDADQVMAKLKSTKINDFYATNGVIREDGRMVHDMYL 367 NM AG YS+V +YLKA++A GTD D VM ++K+ INDF+ATNG IREDGRMVHDMYL Sbjct: 302 NMSQAGTYSSVMHYLKAVQAAGTDAPDAVMKQMKAMPINDFFATNGHIREDGRMVHDMYL 361 Query: 368 VEVKTPAESKYPWDYYRIKRTIPAAEAFIPLSKSKCQFVK 407 EVKTPAESK PWDYY++ T+P EAF+PLSKS C VK Sbjct: 362 FEVKTPAESKRPWDYYKLVATLPGDEAFMPLSKSTCPLVK 401 >ref|YP_001861076.1| extracellular ligand-binding receptor [Burkholderia phymatum STM815] gb|ACC74030.1| extracellular ligand-binding receptor [Burkholderia phymatum STM815] Length = 409 Score = 499 bits (1284), Expect = e-139, Method: Compositional matrix adjust. Identities = 234/402 (58%), Positives = 298/402 (74%), Gaps = 2/402 (0%) Query: 9 LAACIAGVFAC-TTQGMAQTNKISDGAVKIGVLTDMSSVYSESGGQGSIIAARMAVEDFG 67 L IA VFA + AQ KISD VKIGVLTDMS YSE G G++ A +MAV+DFG Sbjct: 6 LKNSIAMVFAVLASSSNAQQGKISDDVVKIGVLTDMSGSYSEFSGAGAVAAVKMAVDDFG 65 Query: 68 GKVLGAPITVITADHQNKADIGASKAREWIDVEKVDMITDVITSSVALAVARVTNDKKRV 127 GKVLG PI V+ ADHQNK D+ ++KAREW D +KVD+I D+ SS+ALAV+R+ +K ++ Sbjct: 66 GKVLGKPIEVVVADHQNKTDLASTKAREWFDTQKVDVIVDLTNSSIALAVSRLAMEKSKI 125 Query: 128 NMTVGAGTTRLTNEECSPYMVHYAYDTYALANGTAKTVTQQGGDTWFFMTADYVFGTSLE 187 + GA T RLTNEECSP VHY D+YA ANGT K + QGG+TWF + ADY FG + Sbjct: 126 AIVTGAMTERLTNEECSPNTVHYVADSYAFANGTGKAMVDQGGNTWFIVAADYAFGNLML 185 Query: 188 KDASDVVVANGGKVLGSVRHPLNASDFSSFLLQAQASKAKIIGLANAGNDMINTLKGARE 247 S V +GGKV+G ++HPL ASDFSSF+LQAQ+S A++IGLANAG D +N +K A+E Sbjct: 186 GRLSTTVTNSGGKVVGYIKHPLAASDFSSFILQAQSSGARVIGLANAGVDTVNAMKSAQE 245 Query: 248 FGLAKGG-QRFAGMLVNINDTHNMGLDVAQGMLLTEGFYWDRNEETRKFSRRYFAKMKQM 306 FG+ +GG Q G+ I D H MGL++AQG+LLT FYWD N+ TR+FS+RYF+++K+M Sbjct: 246 FGITRGGKQNIVGLATVITDVHAMGLNIAQGLLLTTPFYWDMNDATRQFSKRYFSRVKKM 305 Query: 307 PNMIHAGVYSAVTNYLKAIEATGTDDADQVMAKLKSTKINDFYATNGVIREDGRMVHDMY 366 PNM+ AG YSAVT+YLKA+EATGTD+A VM K++ INDF+A NG IREDGRMVHDMY Sbjct: 306 PNMVQAGDYSAVTHYLKAVEATGTDEAGAVMQKMREIPINDFFAKNGTIREDGRMVHDMY 365 Query: 367 LVEVKTPAESKYPWDYYRIKRTIPAAEAFIPLSKSKCQFVKK 408 L++VKTPAESKYPWDYY++ + +PA+ I KS C+ K+ Sbjct: 366 LMQVKTPAESKYPWDYYKLVKQLPASTVTISPEKSACRLFKQ 407 >ref|YP_158961.1| LivK, ABC-type branched-chain amino acid transport systems, periplasmic component [Aromatoleum aromaticum EbN1] emb|CAI08060.1| predicted LivK, ABC-type branched-chain amino acid transport systems,periplasmic component [Aromatoleum aromaticum EbN1] Length = 405 Score = 498 bits (1283), Expect = e-139, Method: Compositional matrix adjust. Identities = 233/384 (60%), Positives = 298/384 (77%), Gaps = 2/384 (0%) Query: 26 QTNKISDGAVKIGVLTDMSSVYSESGGQGSIIAARMAVEDF-GGKVLGAPITVITADHQN 84 Q+ ISDG VK+GVLTDMS YS+ G G++ A RMA+EDF + I +I+ADHQN Sbjct: 23 QSATISDGVVKLGVLTDMSGTYSDLAGPGAVEATRMAIEDFIANEKPDFKIEMISADHQN 82 Query: 85 KADIGASKAREWIDVEKVDMITDVITSSVALAVARVTNDKKRVNMTVGAGTTRLTNEECS 144 KADI A+KAREWID +VD I D++T+S ALAV +V N+K R+++ GAG+T +TNE+C+ Sbjct: 83 KADISANKAREWIDTAQVDAIVDLVTTSTALAVMKVANEKNRISLVTGAGSTPITNEQCN 142 Query: 145 PYMVHYAYDTYALANGTAKTVTQQGGDTWFFMTADYVFGTSLEKDASDVVVANGGKVLGS 204 VH+AYDTY+L GTAK V QQGG +W+F+TADY FG SLEK+ +DVV +GGKVLGS Sbjct: 143 DTTVHWAYDTYSLPVGTAKAVVQQGGKSWYFITADYAFGHSLEKNTADVVKKSGGKVLGS 202 Query: 205 VRHPLNASDFSSFLLQAQASKAKIIGLANAGNDMINTLKGAREFGLAKGGQRFAGMLVNI 264 VRHP SDFSSFLL AQAS A++IGLANAGND IN++K AREFG+ Q AG+L+ I Sbjct: 203 VRHPFPGSDFSSFLLSAQASGAQVIGLANAGNDTINSIKQAREFGITP-KQSLAGLLMFI 261 Query: 265 NDTHNMGLDVAQGMLLTEGFYWDRNEETRKFSRRYFAKMKQMPNMIHAGVYSAVTNYLKA 324 +D H++GLD GM LT GFYWDR++ETR +S+RYF KMK+MP M+ AG YSAV +YLKA Sbjct: 262 SDVHSLGLDATGGMYLTTGFYWDRDDETRAWSKRYFDKMKRMPTMVQAGDYSAVYHYLKA 321 Query: 325 IEATGTDDADQVMAKLKSTKINDFYATNGVIREDGRMVHDMYLVEVKTPAESKYPWDYYR 384 +++ GTD+A VMAK+++T +NDF+A NG +R DGRMVHDMYL +VK P+ESKYPWDYY Sbjct: 322 VKSAGTDEAKAVMAKMRATPVNDFFAKNGQLRADGRMVHDMYLAQVKKPSESKYPWDYYH 381 Query: 385 IKRTIPAAEAFIPLSKSKCQFVKK 408 I++ IP AEAFIP ++S C +KK Sbjct: 382 IRQVIPGAEAFIPPAESACPLMKK 405 >ref|YP_931624.1| ABC transporter substrate-binding protein [Azoarcus sp. BH72] emb|CAL92737.1| probable ABC transporter substrate binding protein [Azoarcus sp. BH72] Length = 404 Score = 496 bits (1277), Expect = e-138, Method: Compositional matrix adjust. Identities = 235/381 (61%), Positives = 292/381 (76%), Gaps = 2/381 (0%) Query: 29 KISDGAVKIGVLTDMSSVYSESGGQGSIIAARMAVEDFGGKV-LGAPITVITADHQNKAD 87 + S VKIGVLTDMS YS+ GQG+++A +MA+EDF K G + +++ADHQNKAD Sbjct: 25 QFSGNTVKIGVLTDMSGTYSDLAGQGAVVATQMAIEDFVAKEKPGFKVEMVSADHQNKAD 84 Query: 88 IGASKAREWIDVEKVDMITDVITSSVALAVARVTNDKKRVNMTVGAGTTRLTNEECSPYM 147 I ++KAREW + E VD T+++T+S ALAV +V + +V + G G+T +TNE+C+ Sbjct: 85 IASNKAREWFEREGVDTATELVTTSTALAVMKVAKEMNKVVLMNGPGSTPITNEQCNDVS 144 Query: 148 VHYAYDTYALANGTAKTVTQQGGDTWFFMTADYVFGTSLEKDASDVVVANGGKVLGSVRH 207 VHY YDTYALANGTAK VTQQGG WFF+TADY FG +LEKD+S VV ANGGKV+GSVRH Sbjct: 145 VHYTYDTYALANGTAKAVTQQGGKNWFFLTADYAFGQALEKDSSAVVTANGGKVVGSVRH 204 Query: 208 PLNASDFSSFLLQAQASKAKIIGLANAGNDMINTLKGAREFGLAKGGQRFAGMLVNINDT 267 P ASDFSSFLLQAQAS A+IIGLANAG D N +K A EFG+ Q+ AG+L+ I+D Sbjct: 205 PFPASDFSSFLLQAQASNAQIIGLANAGADTTNAIKQAAEFGITP-KQQLAGLLMFISDV 263 Query: 268 HNMGLDVAQGMLLTEGFYWDRNEETRKFSRRYFAKMKQMPNMIHAGVYSAVTNYLKAIEA 327 H++GL AQGM LT GFYWD N+ETR +S+R+F K K+MP M+ AG YS+V +YLKA++A Sbjct: 264 HSLGLKNAQGMFLTTGFYWDLNDETRAWSKRFFDKQKRMPTMVQAGQYSSVMHYLKAVKA 323 Query: 328 TGTDDADQVMAKLKSTKINDFYATNGVIREDGRMVHDMYLVEVKTPAESKYPWDYYRIKR 387 GTDD +VMA++K T INDF+A NG IREDGRMVHDMYLV+VK P ESKYPWDYY +K+ Sbjct: 324 AGTDDTTKVMAQMKKTPINDFFAKNGQIREDGRMVHDMYLVQVKKPEESKYPWDYYHVKQ 383 Query: 388 TIPAAEAFIPLSKSKCQFVKK 408 IP AEAF PLS S+C VKK Sbjct: 384 VIPGAEAFQPLSLSRCPLVKK 404