BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0148.p (279 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|ZP_02888012.1| porin Gram-negative type [Burkholderia ambifa... 172 4e-41 ref|ZP_02909862.1| porin Gram-negative type [Burkholderia ambifa... 158 1e-36 gb|EGD06369.1| putative outer membrane porin protein [Burkholder... 152 4e-35 ref|YP_002908280.1| outer membrane porin OpcP [Burkholderia glum... 150 2e-34 ref|YP_001889660.1| porin [Burkholderia phytofirmans PsJN] >gi|1... 149 5e-34 >ref|ZP_02888012.1| porin Gram-negative type [Burkholderia ambifaria IOP40-10] gb|EDT06322.1| porin Gram-negative type [Burkholderia ambifaria IOP40-10] Length = 360 Score = 172 bits (437), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 104/235 (44%), Positives = 144/235 (61%), Gaps = 9/235 (3%) Query: 19 GLLTVPVCAHADDSMTIYGIINPGISIFNNISGGRTTIMSDGVIQASRIGFKGSEDLGGG 78 GLL+ V A A S+T+YGI++ G++ NN G + + GV+Q SR GF+GSEDLGGG Sbjct: 15 GLLSSGV-ACAQSSVTLYGIVDAGLAYVNNQGGHSSVAQTSGVMQGSRFGFRGSEDLGGG 73 Query: 79 NAAIFQLETGFNSKNGALGQGGLLFGRQALVGITGKDWGSLTVGRQYSFTYDNFVTLING 138 IF LE GFN +G+LGQGGLLFGRQA VG++ G++TVGRQY F ++ + Sbjct: 74 YKTIFVLENGFNVNSGSLGQGGLLFGRQAYVGLS-TPGGTVTVGRQYDFL--TYLFPMTN 130 Query: 139 VTTYNLYAFKMGDADGTAAQRLNNAVKYVSPKLNGFQLGTMHSFGEQAGSLSTQSSDSLG 198 +T +Y+F +GD D ++RLNNAV Y +P G Q G M+SFG GSL+T S+ S+G Sbjct: 131 ITEGGVYSFHLGDYDRLGSERLNNAVSYQTPVFKGLQAGAMYSFGGAPGSLATNSAYSVG 190 Query: 199 LTYGGEGFKLVSAYTVARDT--RPAMSIGT-TVFGQSVTQTT--FDRIDTAALGA 248 +TY G L +AYT +T P +G ++ G T DR++ +GA Sbjct: 191 ITYSGSAINLAAAYTSINNTSVSPTNGLGVPSLLGSRPGTATVNLDRLNILGIGA 245 >ref|ZP_02909862.1| porin Gram-negative type [Burkholderia ambifaria MEX-5] gb|EDT38998.1| porin Gram-negative type [Burkholderia ambifaria MEX-5] Length = 376 Score = 158 bits (399), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 97/226 (42%), Positives = 128/226 (56%), Gaps = 11/226 (4%) Query: 17 ISGLLTVPV--CAHADDSMTIYGIINPGISIFNNISGGRTTIMSDGVIQASRIGFKGSED 74 ++G+++V V AHA S+++YGII+ GI+ NN G + DGV +R+G G+ED Sbjct: 7 LAGMMSVMVHGYAHAQSSVSLYGIIDGGITHVNNAGGAHAYLFDDGVSYGNRVGLMGTED 66 Query: 75 LGGGNAAIFQLETGFNSKNGALGQGGLLFGRQALVGITGKDWGSLTVGRQYSFTYDNFVT 134 LGGGN A+F+LE GF G L QGG +FGRQA VG+ G DWG+LT G QY F YD F Sbjct: 67 LGGGNKAVFKLENGFRLGTGKLNQGGAMFGRQAYVGL-GNDWGTLTFGNQYDFAYD-FTA 124 Query: 135 LINGVTTYNLYAFKMGDADGTAAQRLNNAVKYVSPKLNGFQLGTMHSFGEQAGSLSTQSS 194 N + Y +GD D + RL NAVK+VS +G +G M+SF AGS S+ Sbjct: 125 AFNVSAFGSGYGVHLGDFDRQSGDRLQNAVKFVSNSFHGLVVGGMYSFSNDAGSFHDGSA 184 Query: 195 DSLGLTYGGEGFKLVSAYTVARDTR------PAMSIG-TTVFGQSV 233 S+G TY F YT R P +G TT+ GQ+V Sbjct: 185 WSVGATYTHGDFSAGGNYTRLNSPRGLAALDPYAQMGVTTMLGQTV 230 >gb|EGD06369.1| putative outer membrane porin protein [Burkholderia sp. TJI49] Length = 376 Score = 152 bits (385), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 94/226 (41%), Positives = 127/226 (56%), Gaps = 11/226 (4%) Query: 17 ISGLLTVPV--CAHADDSMTIYGIINPGISIFNNISGGRTTIMSDGVIQASRIGFKGSED 74 ++G+++V V AHA S+++YGII+ GI+ NN G + DGV +R+G G+ED Sbjct: 7 LAGMMSVMVQGHAHAQSSVSLYGIIDGGITYVNNTGGAHAYLFDDGVSYGNRVGLMGTED 66 Query: 75 LGGGNAAIFQLETGFNSKNGALGQGGLLFGRQALVGITGKDWGSLTVGRQYSFTYDNFVT 134 LGGGN A+F+LE GF G L QGG +FGRQA VG+ G DWG+LT G QY F +D F Sbjct: 67 LGGGNKAVFKLENGFRLGTGKLNQGGAMFGRQAYVGL-GNDWGTLTFGNQYDFAFD-FTA 124 Query: 135 LINGVTTYNLYAFKMGDADGTAAQRLNNAVKYVSPKLNGFQLGTMHSFGEQAGSLSTQSS 194 N + Y +GD D + RL NAVK+VS +G +G M+SF AGS S+ Sbjct: 125 NYNVSAFGSGYGVHLGDFDRQSGDRLQNAVKFVSSSFHGLVVGGMYSFSNNAGSFHDGSA 184 Query: 195 DSLGLTYGGEGFKLVSAYTVARDTR------PAMSIGT-TVFGQSV 233 S+G +Y F YT R P +G T+ GQ+V Sbjct: 185 WSVGASYTRGDFSAGGNYTRLNSPRGLAALDPYAQMGVRTMLGQTV 230 >ref|YP_002908280.1| outer membrane porin OpcP [Burkholderia glumae BGR1] gb|ACR31045.1| Outer membrane porin OpcP [Burkholderia glumae BGR1] Length = 381 Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 98/226 (43%), Positives = 124/226 (54%), Gaps = 14/226 (6%) Query: 27 AHADDSMTIYGIINPGISIFNNISGGRTTIMSDGVIQASRIGFKGSEDLGGGNAAIFQLE 86 +HA S+T+YGII+ G++ +N G DGV +R+GF GSEDLGGG A+F LE Sbjct: 24 SHAQSSVTLYGIIDAGVTYASNAGGAHLAKFDDGVSYGNRLGFSGSEDLGGGLKAVFALE 83 Query: 87 TGFNSKNGALGQGGLLFGRQALVGITGKDWGSLTVGRQYSFTYDNFVTLINGVTTYNLYA 146 TGF NG LG GG LFGRQA VG+ +WG+L+ G Q T D V L N + YA Sbjct: 84 TGFRLGNGQLGFGGALFGRQAYVGLQ-NEWGTLSFGDQLDMT-DEMVYLTNVSAWASGYA 141 Query: 147 FKMGDADGTAAQRLNNAVKYVSPKLNGFQLGTMHSFGEQAGSLSTQSSDSLGLTYGGEGF 206 GD D RL N+VK++S GF+LG M+SFG AG+ S+ S+G +Y GF Sbjct: 142 IHQGDFDRFNGDRLPNSVKFLSNPFGGFRLGAMYSFGNVAGNFHRNSAYSVGASYARGGF 201 Query: 207 KLVSAYTVARDTR------PAMSIGTTVF-GQSVTQTTFDRIDTAA 245 +AYT D P IGT F GQ RID A+ Sbjct: 202 SAGAAYTQLNDPSGIYAFDPYAMIGTRTFLGQPTV-----RIDPAS 242 >ref|YP_001889660.1| porin [Burkholderia phytofirmans PsJN] gb|ACD20289.1| porin Gram-negative type [Burkholderia phytofirmans PsJN] Length = 384 Score = 149 bits (376), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 96/225 (42%), Positives = 124/225 (55%), Gaps = 23/225 (10%) Query: 20 LLTVPVCAHADDSMTIYGIINPGISIFNN--ISGGRTTIMS--DGVIQASRIGFKGSEDL 75 L AHA S+T+YG+I+ GIS NN + G + DGV Q SR G +G+EDL Sbjct: 11 LAVFATAAHAQSSVTLYGVIDAGISYVNNSKTATGHDNLFKYDDGVAQGSRWGLRGTEDL 70 Query: 76 GGGNAAIFQLETGFNSKNGALGQGGLLFGRQALVGITGKDWGSLTVGRQYSFTYD----N 131 GGG A+F LE+GFNS NG LGQGG LFGRQA VG++ GSLT GRQYSF+ D N Sbjct: 71 GGGLKALFVLESGFNSGNGTLGQGGALFGRQAYVGLSKDGIGSLTFGRQYSFSTDYLGGN 130 Query: 132 FVTLINGVTTYNLYAFKMGDADGTAAQRLNNAVKYVSPKLNGFQLGTMHSFGEQAGSLS- 190 + T G T YA+ + D D + R+NNAVK+ S G G M+ F QAG+ + Sbjct: 131 YST--GGQTVAGNYAYHINDVDQLTSSRINNAVKFSSANFAGLTFGAMYGFSNQAGAFAG 188 Query: 191 ---------TQSSDSLGLTYGGEGFKLVSAYTVAR---DTRPAMS 223 + + S G+ Y F + +AYT R + PA S Sbjct: 189 SPTVGTTAGSSRAYSFGVNYANGPFGVGAAYTDIRFPAQSTPAFS 233