BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0141.p (332 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_293393.1| regulatory protein, LysR:LysR, substrate-bindin... 437 e-120 ref|YP_004361248.1| regulatory protein, LysR:LysR, substrate-bin... 292 6e-77 ref|YP_833810.1| LysR family transcriptional regulator [Burkhold... 227 2e-57 ref|ZP_07774649.1| nodulation protein D1 [Pseudomonas fluorescen... 222 8e-56 ref|YP_004353399.1| LysR family transcriptional regulator [Pseud... 221 9e-56 >ref|YP_293393.1| regulatory protein, LysR:LysR, substrate-binding [Ralstonia eutropha JMP134] gb|AAZ65536.1| transcriptional regulator, LysR family [Ralstonia eutropha JMP134] Length = 334 Score = 437 bits (1123), Expect = e-120, Method: Compositional matrix adjust. Identities = 201/304 (66%), Positives = 254/304 (83%), Gaps = 1/304 (0%) Query: 1 MRFNKLDLNQLVVLDALLSTLSVSKSAERLFLSQPATSCALARLREYFEDDLLVSVGKTN 60 MRFNKLDLNQLVVLDALLST SV K+AERLFLSQPATSC+LARLREYFEDDLLV+VGKT Sbjct: 1 MRFNKLDLNQLVVLDALLSTRSVGKAAERLFLSQPATSCSLARLREYFEDDLLVAVGKTQ 60 Query: 61 ALTPLGSSLIKPVRDVLLQVQTITRARPSFDPSTSTRKFTIESSDYVINIFLSEVIRRAS 120 LTPL L KPVRDVLLQ+QTITRARPSFDP+TSTR+F IESSDYVI++FLS+VIRRA+ Sbjct: 61 VLTPLALGLRKPVRDVLLQIQTITRARPSFDPATSTRRFIIESSDYVISVFLSQVIRRAA 120 Query: 121 VLAPMMEFDLRSISPQTPNNLENGDAEILIIPHYATVQGHPKEELFEDKFSCLVCANGVF 180 AP+M+FDLR+ISPQTP +LE+G+AE+LI P +A V GHP E LFED FSCLV A+ Sbjct: 121 EAAPLMQFDLRAISPQTPEHLESGEAELLIAPEFAMVPGHPSEPLFEDTFSCLVSADSTV 180 Query: 181 KDKEELTTDEYFDANHISVEWGGGRRITFDTRVISASNKHRKQTIVAPSFSLVPELLVGT 240 ++ LT + YFDA HI VEWGGGRR+TFD+R+I+ + R+Q ++APSF+LVP LL GT Sbjct: 181 -GQDGLTVETYFDAAHIGVEWGGGRRVTFDSRLIATGKRTRRQDVIAPSFTLVPALLSGT 239 Query: 241 NMIATLPHRLATKIAKQFSLKLLPCPADIPHFTENVQWHKFRDNDPSVLWLRQLFKETAA 300 + IATLP RLA ++A++F L+ + CP D+P F+E++QW K++++DP+++WLR+L +ETA Sbjct: 240 DRIATLPTRLAEQMAQRFGLRRVTCPIDLPAFSEHLQWQKYQESDPAIVWLRELLRETAR 299 Query: 301 TIIG 304 ++ Sbjct: 300 EMVA 303 >ref|YP_004361248.1| regulatory protein, LysR:LysR, substrate-binding protein [Burkholderia gladioli BSR3] gb|AEA61292.1| regulatory protein, LysR:LysR, substrate-binding protein [Burkholderia gladioli BSR3] Length = 328 Score = 292 bits (747), Expect = 6e-77, Method: Compositional matrix adjust. Identities = 148/300 (49%), Positives = 204/300 (68%), Gaps = 2/300 (0%) Query: 1 MRFNKLDLNQLVVLDALLSTLSVSKSAERLFLSQPATSCALARLREYFEDDLLVSVGKTN 60 MRFNKLDLNQLVVLDALL SV+++A+RLFLSQ ATSCALARLREYF+D+LLV VGKT Sbjct: 1 MRFNKLDLNQLVVLDALLDARSVTQAAQRLFLSQSATSCALARLREYFDDELLVPVGKTL 60 Query: 61 ALTPLGSSLIKPVRDVLLQVQTITRARPSFDPSTSTRKFTIESSDYVINIFLSEVIRRAS 120 T +L +PVR+VL Q+Q+IT P FDP +S R IE+SDYVI++FL EV+RRAS Sbjct: 61 VPTSRAENLRQPVREVLRQIQSITHDAPRFDPRSSDRTLVIEASDYVISVFLGEVLRRAS 120 Query: 121 VLAPMMEFDLRSISPQTPNNLENGDAEILIIPHYATVQGHPKEELFEDKFSCLVCANGVF 180 + AP M F +R+ + +LENG+ ++LI P + +P E LFED +SCLV +G Sbjct: 121 IEAPNMRFRVRTAATLGLVHLENGEIDLLITPDFRAGAAYPSEPLFEDGWSCLVW-DGNQ 179 Query: 181 KDKEELTTDEYFDANHISVEWGGGRRITFDTRVISASNKHRKQTIVAPSFSLVPELLVGT 240 + LT + Y + H+ +EW GG +T D+R + R+ + A +F +VP LL GT Sbjct: 180 QVGRRLTLERYLELGHVIMEWAGGAIVTLDSRAVLDLGYRRRAEVTAETFQVVPHLLHGT 239 Query: 241 NMIATLPHRLATKIAKQF-SLKLLPCPADIPHFTENVQWHKFRDNDPSVLWLRQLFKETA 299 +ATL RLAT + + SL++L CP IP E VQ+++F+++DP+++W R+L +E A Sbjct: 240 QRVATLQTRLATLLQRASPSLRVLRCPFAIPKLAEVVQYNRFQEHDPALMWFRRLMREVA 299 >ref|YP_833810.1| LysR family transcriptional regulator [Burkholderia cenocepacia HI2424] gb|ABK06917.1| transcriptional regulator, LysR family [Burkholderia cenocepacia HI2424] Length = 303 Score = 227 bits (578), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 123/304 (40%), Positives = 177/304 (58%), Gaps = 6/304 (1%) Query: 1 MRFNKLDLNQLVVLDALLSTLSVSKSAERLFLSQPATSCALARLREYFEDDLLVSVGKTN 60 MRFN+LDLN LV LDALL ++++AERL LSQ A S LA+LREYF+D+LLV VG+ Sbjct: 1 MRFNRLDLNLLVTLDALLDDRRITRAAERLNLSQSAISGMLAKLREYFDDELLVPVGRNL 60 Query: 61 ALTPLGSSLIKPVRDVLLQVQTITRARPSFDPSTSTRKFTIESSDYVINIFLSEVIRRAS 120 LTPL L++PVRD+LLQVQTI P+F+P+ + R F I +SDYVIN+ + +I Sbjct: 61 ELTPLARELVQPVRDLLLQVQTIVAIDPAFEPANARRHFKIATSDYVINVLMHRLIPVIE 120 Query: 121 VLAPMMEFDLRSISPQ--TPNNLENGDAEILIIPHYATVQGHPKEELFEDKFSCLVCANG 178 LAP + +L PQ P L G+ + LIIP HP LF+D + +V NG Sbjct: 121 PLAPYLTLEL---MPQEDAPERLRRGEYDFLIIPEPFKADDHPAIALFDDSYVGVVW-NG 176 Query: 179 VFKDKEELTTDEYFDANHISVEWGGGRRITFDTRVISASNKHRKQTIVAPSFSLVPELLV 238 + Y +H++ G R ++D+R + A R+ + F+ + +L+ Sbjct: 177 NRAVGASIDVARYEQLDHVATLLGWPRLPSYDSRYVEAQGIRRRVRVTTSDFTSMAPVLI 236 Query: 239 GTNMIATLPHRLATKIAKQFSLKLLPCPADIPHFTENVQWHKFRDNDPSVLWLRQLFKET 298 GT MIAT+ RLAT++ ++ L+L+ IP E +QWH++R+ DP WLR+ Sbjct: 237 GTQMIATMHRRLATELTRRMPLRLVELEFPIPQMREFLQWHEYREKDPCHRWLREQIISV 296 Query: 299 AATI 302 AA + Sbjct: 297 AAGL 300 >ref|ZP_07774649.1| nodulation protein D1 [Pseudomonas fluorescens WH6] gb|EFQ64200.1| nodulation protein D1 [Pseudomonas fluorescens WH6] Length = 303 Score = 222 bits (565), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 111/293 (37%), Positives = 176/293 (60%), Gaps = 3/293 (1%) Query: 1 MRFNKLDLNQLVVLDALLSTLSVSKSAERLFLSQPATSCALARLREYFEDDLLVSVGKTN 60 MRFN LDLN LV LD LL +++++AERL ++Q ATS L RLR YFED+LL VG+ Sbjct: 1 MRFNHLDLNLLVALDVLLEEQNITRAAERLHMTQSATSGVLGRLRLYFEDELLAQVGRKM 60 Query: 61 ALTPLGSSLIKPVRDVLLQVQTITRARPSFDPSTSTRKFTIESSDYVINIFLSEVIRRAS 120 TP L PVR VLL +Q+ A+P FDP+TS R F + +SDY+I++ + VI++ S Sbjct: 61 QPTPYARELAAPVRQVLLTIQSSITAKPVFDPATSKRHFRLITSDYLISVLFARVIQKIS 120 Query: 121 VLAPMMEFDLRSISPQTPNNLENGDAEILIIPHYATVQGHPKEELFEDKFSCLVC-ANGV 179 + AP + F+L + L G+A+++I+P + ++GHP + LFE++ C+V N + Sbjct: 121 LEAPHITFELLGPGDTSTEMLMRGEADMMIVPEHYLIEGHPSQLLFEEEHVCVVWDGNTL 180 Query: 180 FKDKEELTTDEYFDANHISVEWGGGRRITFDTRVISASNKHRKQTIVAPSFSLVPELLVG 239 D ++ D+Y + H+SV +G R+++ + ++ R+ +V F+ +P+L+VG Sbjct: 181 VGDS--ISLDQYIEMGHVSVIFGRNRQLSVEEWLMGQYGFTRRMEVVTHDFNTLPQLIVG 238 Query: 240 TNMIATLPHRLATKIAKQFSLKLLPCPADIPHFTENVQWHKFRDNDPSVLWLR 292 T +AT+ R+A A L+++ P IP E + WH+ + DP WLR Sbjct: 239 TQRVATMLQRMARLYANYLPLRIVQPPVKIPVMREFMLWHRTMEGDPMHRWLR 291 >ref|YP_004353399.1| LysR family transcriptional regulator [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA68395.1| putative transcription factor, LysR family [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 303 Score = 221 bits (564), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 112/293 (38%), Positives = 176/293 (60%), Gaps = 3/293 (1%) Query: 1 MRFNKLDLNQLVVLDALLSTLSVSKSAERLFLSQPATSCALARLREYFEDDLLVSVGKTN 60 MRFN LDLN LV LD LL +++++AERL ++Q ATS L RLR YFED+LL VG+ Sbjct: 1 MRFNHLDLNLLVALDVLLEEQNITRAAERLHMTQSATSGVLGRLRLYFEDELLAQVGRKM 60 Query: 61 ALTPLGSSLIKPVRDVLLQVQTITRARPSFDPSTSTRKFTIESSDYVINIFLSEVIRRAS 120 TP L PVR VLL +Q+ A+P FDP+TS R F + +SDY+I++ + VI++ S Sbjct: 61 QPTPYARELAAPVRQVLLTIQSSITAKPVFDPATSKRHFRLITSDYLISVLFARVIQKIS 120 Query: 121 VLAPMMEFDLRSISPQTPNNLENGDAEILIIPHYATVQGHPKEELFEDKFSCLVC-ANGV 179 + AP + F+L + L G+A+++I+P ++GHP + LFE++ C+V N + Sbjct: 121 LEAPHITFELLGPGDTSTEMLMRGEADMMIVPERYLIEGHPSQLLFEEEHVCVVWDGNTL 180 Query: 180 FKDKEELTTDEYFDANHISVEWGGGRRITFDTRVISASNKHRKQTIVAPSFSLVPELLVG 239 D ++ D+Y + H+SV +G R+++ + ++S R+ +V F+ +P+L+VG Sbjct: 181 VGDS--ISLDQYIEMGHVSVIFGRNRQLSVEEWLMSQYGFTRRMEVVTHDFNTLPQLIVG 238 Query: 240 TNMIATLPHRLATKIAKQFSLKLLPCPADIPHFTENVQWHKFRDNDPSVLWLR 292 T +AT+ R+A A L+++ P IP E + WH+ + DP WLR Sbjct: 239 TQRVATMLQRMARLYANYLPLRIVQPPVKIPVMREFMLWHRTMEGDPMHRWLR 291