BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0121.p (358 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002979850.1| porin Gram-negative type [Ralstonia picketti... 204 2e-50 ref|ZP_03265350.1| porin Gram-negative type [Burkholderia sp. H1... 201 1e-49 ref|YP_145601.1| putative porin signal peptide protein [Ralstoni... 199 7e-49 ref|ZP_06844967.1| porin Gram-negative type [Burkholderia sp. Ch... 197 2e-48 ref|YP_001116739.1| porin [Burkholderia vietnamiensis G4] >gi|16... 193 3e-47 >ref|YP_002979850.1| porin Gram-negative type [Ralstonia pickettii 12D] ref|YP_002982726.1| porin [Ralstonia pickettii 12D] ref|ZP_07677683.1| porin, Gram-negative type [Ralstonia sp. 5_7_47FAA] gb|ACS64054.1| porin Gram-negative type [Ralstonia pickettii 12D] gb|ACS66196.1| porin Gram-negative type [Ralstonia pickettii 12D] gb|EFP64064.1| porin, Gram-negative type [Ralstonia sp. 5_7_47FAA] Length = 354 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 126/340 (37%), Positives = 184/340 (54%), Gaps = 13/340 (3%) Query: 23 HAEVTVYGVVDVGIEALSNAPVAGTKRGGTLIREQSANAQLSRIGFKGSETIDPCLKAIF 82 + VT+YG+VD G+E ++ +K G+++REQS N SR G KGSE + KA+ Sbjct: 24 QSSVTLYGIVDTGVEYVNRVAQGASK--GSVVREQSGNLAGSRWGLKGSEDLGGGYKAMM 81 Query: 83 KLDAAFFPDTGSLSPNGKLFHGSSYVGLSGCQGELTLGRHISLLYEEAYYFDPLSIF-AY 141 L+ F DTG+L +G+LF ++VGL+ G LTLGRH +LLYE + +DPL+ +Y Sbjct: 82 TLEGGFNSDTGTLGQSGRLFGRKAFVGLATPSGTLTLGRHQNLLYELMFKYDPLTFNPSY 141 Query: 142 SLPSMDVTGFGGRADNSIKYRRSLGSWTLTGFYSTGYSGAYE---ETAGSPRIAREMSMS 198 S SMD + F RADNS++Y +LG T YS G+ A + E G+ ++ REMS + Sbjct: 142 SAQSMD-SQFVNRADNSVRYGLNLGGVTFAALYSAGFDAAIQNGGEVPGASKVGREMSAA 200 Query: 199 INYDDRFLAGGIAIDHLNGTTPDTKNQITDRIFLAGSLTFEKDKIFAGYQHYHQTALNAI 258 I YD + G+ D L GT+ T++ R L S K AG + + +A Sbjct: 201 ILYDQGPFSVGVTYDQLQGTSIATQSNTQQRTLLGLSYQIGPVKALAGLRWLNTRNTDAP 260 Query: 259 PVATYDLIWAGAQHAWSAQLNSAVGVFHQKYSTGQGSATLAAAYLDYFLSKRTDVYMNVG 318 P + L W G +A L+ + V+H + G T+ A +DY LSKRTDVY Sbjct: 261 PSSW--LYWGGMTWQVNAPLSISASVYHTHFRESNGGPTMGALLVDYALSKRTDVYAEGA 318 Query: 319 YMKNSGSLNLGVDGQPGIIGPGTLPGQAQAGLAIGVRHTF 358 Y+ N + N+G+ G G + G QAG+ +G+RH F Sbjct: 319 YVANRSTTNVGIRG----TGVDVVAGMNQAGVTVGIRHLF 354 >ref|ZP_03265350.1| porin Gram-negative type [Burkholderia sp. H160] gb|EEA03100.1| porin Gram-negative type [Burkholderia sp. H160] Length = 356 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 134/363 (36%), Positives = 193/363 (53%), Gaps = 14/363 (3%) Query: 1 MQSSKFNFA-GFLIVSFSLSIEAHAEVTVYGVVDVGIEALSNAPVAGTKRGGTLIREQSA 59 M+ F A G L+ + A + VT+YG+VD G+E + N G+++G ++IREQS Sbjct: 3 MKRHTFPLACGGLLTLACTAANAQSSVTLYGIVDAGVEYV-NRVTQGSQKG-SVIREQSG 60 Query: 60 NAQLSRIGFKGSETIDPCLKAIFKLDAAFFPDTGSLSPNGKLFHGSSYVGLSGCQGELTL 119 N SR G KGSE + KA+F L+ F +TG+L +G+LF ++VG+S G LTL Sbjct: 61 NLAGSRWGLKGSEDLGGGYKAVFTLEGGFNVNTGALGQSGRLFGRKAFVGVSTPYGTLTL 120 Query: 120 GRHISLLYEEAYYFDPLSIF-AYSLPSMDVTGFGGRADNSIKYRRSLGSWTLTGFYSTGY 178 GRH +LLYE Y +D L+ +YS SMD + F RADNS++Y LG T YSTG+ Sbjct: 121 GRHQNLLYELMYKYDALTFNPSYSAQSMD-SQFVNRADNSVRYGVHLGGVTFAALYSTGF 179 Query: 179 SGAYE---ETAGSPRIAREMSMSINYDDRFLAGGIAIDHLNGTTPDTKNQITDRIFLAGS 235 G+ ++ REMS ++ YD + G+ D L GT+ T++ R L S Sbjct: 180 DATIPNGGNVPGATKVGREMSAAVLYDRGPFSIGLTYDQLQGTSIATQSNAQQRALLGLS 239 Query: 236 LTFEKDKIFAGYQHYHQTALNAIPVATYDLIWAGAQHAWSAQLNSAVGVFHQKYSTGQGS 295 F AG + + +A P + L W G +A L+ + V+H ++ G Sbjct: 240 YDFGPVTTLAGLRWLNTRNTDAPPSSL--LYWGGVTWRVNAPLSISASVYHTQFRNPHGG 297 Query: 296 ATLAAAYLDYFLSKRTDVYMNVGYMKNSGSLNLGVDGQPGIIGPGTLPGQAQAGLAIGVR 355 T+ A +DY LSKRTDVY Y+ N N+G+ G G PG QAG+ +G+R Sbjct: 298 PTMGALLVDYSLSKRTDVYAEGAYVSNRSFSNVGIRG----TGVDIAPGMDQAGVTVGIR 353 Query: 356 HTF 358 HTF Sbjct: 354 HTF 356 >ref|YP_145601.1| putative porin signal peptide protein [Ralstonia metallidurans CH34] ref|YP_581783.1| porin OmpC [Cupriavidus metallidurans CH34] ref|YP_001899326.1| porin [Ralstonia pickettii 12J] emb|CAI11250.1| putative porin signal peptide protein [Cupriavidus metallidurans CH34] gb|ABF12833.1| Outer membrane protein (porin)OmpC family [Cupriavidus metallidurans CH34] gb|ACD26894.1| porin Gram-negative type [Ralstonia pickettii 12J] Length = 355 Score = 199 bits (505), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 130/347 (37%), Positives = 184/347 (53%), Gaps = 9/347 (2%) Query: 16 FSLSIEAHAEVTVYGVVDVGIEALSNAPVAGTKRGGTLIREQSANAQLSRIGFKGSETID 75 F+ + A + VT+YGV D GIE LSN P A + G +R S N SR G +G E + Sbjct: 14 FATTAFAQSSVTLYGVADAGIEYLSNVPSA-SPGGSNQVRMTSGNMSTSRWGLRGVEDLG 72 Query: 76 PCLKAIFKLDAAFFPDTGSLSPNGKLFHGSSYVGLSGCQGELTLGRHISLLYEEAYYFDP 135 LKAIF+L++ DTG+ + + +LF S++VGL G+LTLGR + +Y+ DP Sbjct: 73 GGLKAIFELESGISFDTGAQNNSTRLFDRSAFVGLGSKYGQLTLGRQTTPMYDTTLQLDP 132 Query: 136 LSIFA--YSLPSMDVTGFGGRADNSIKYRRSLGSWTLTGFYSTGYSGAYEETAGSPRIAR 193 + FA YSL MD GRADN+IKYR T+TG YS +G E G+ ++ R Sbjct: 133 MG-FAPRYSLFKMDDV-LAGRADNAIKYRGIFSGLTVTGLYSFSRTGG-GEVPGNYKVDR 189 Query: 194 EMSMSINYDDRFLAGGIAIDHLNGTTPDTKNQITDRIFLAGSLTFEKDKIFAGYQHYHQT 253 M +S+ Y+ LA G D + G+T T ++ R + S F K F GY+ Y+ Sbjct: 190 NMGVSLMYETGALAVGAVYDEIQGSTVATADRKDRRALIGASYAFGPAKAFIGYRWYNGN 249 Query: 254 ALNAIPVATYDLIWAGAQHAWSAQLNSAVGVFHQKYSTGQGSATLAAAYLDYFLSKRTDV 313 + A+P ++ WAG ++ + L ++ L A DY SKRTDV Sbjct: 250 -VGALPTNGSNIYWAGLRYGLTPALTLTGAAYYTDSRNSGADPFLFVASADYAFSKRTDV 308 Query: 314 YMNVGYMKNSGSLNLGVDGQPGIIGPGT--LPGQAQAGLAIGVRHTF 358 YMNVGY N G+ LG++G G T +PG+ Q G+ +GVRH F Sbjct: 309 YMNVGYALNRGNSQLGMNGYNSTTGSPTNVVPGKDQTGVVVGVRHKF 355 >ref|ZP_06844967.1| porin Gram-negative type [Burkholderia sp. Ch1-1] gb|EFG67379.1| porin Gram-negative type [Burkholderia sp. Ch1-1] Length = 356 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 128/354 (36%), Positives = 184/354 (51%), Gaps = 13/354 (3%) Query: 9 AGFLIVSFSLSIEAHAEVTVYGVVDVGIEALSNAPVAGTKRGGTLIREQSANAQLSRIGF 68 G L+ + A + T+YG+VD G+E ++ P + G++IREQS N SR G Sbjct: 12 CGGLLALACTAAHAQSSFTLYGIVDAGVEYVNRVPQG--SQTGSVIREQSGNLAGSRWGL 69 Query: 69 KGSETIDPCLKAIFKLDAAFFPDTGSLSPNGKLFHGSSYVGLSGCQGELTLGRHISLLYE 128 KGSE + KA+F L+ F +TG+L +G+LF ++VG+S G LTLGRH +LLYE Sbjct: 70 KGSEDLGGGYKAVFTLEGGFNVNTGALGQSGRLFGRKAFVGVSTPYGTLTLGRHQNLLYE 129 Query: 129 EAYYFDPLSIF-AYSLPSMDVTGFGGRADNSIKYRRSLGSWTLTGFYSTGYSGAYEE--- 184 Y +D L+ +YS SMD + F RADNS++Y LG T YSTGY Sbjct: 130 LMYKYDALTFNPSYSAQSMD-SQFVNRADNSVRYGVHLGDVTFAALYSTGYDATIPNGGS 188 Query: 185 TAGSPRIAREMSMSINYDDRFLAGGIAIDHLNGTTPDTKNQITDRIFLAGSLTFEKDKIF 244 G+ ++ REMS ++ YD + G+ D L GT+ T++ R L S F Sbjct: 189 VPGATKVGREMSAAVLYDRGPFSIGLTYDQLQGTSIATQSNAQQRALLGMSYDFGPVTTL 248 Query: 245 AGYQHYHQTALNAIPVATYDLIWAGAQHAWSAQLNSAVGVFHQKYSTGQGSATLAAAYLD 304 AG + + + P + L W G +A L+ + V+H ++ G TL A +D Sbjct: 249 AGLRWLNTRNTDVPPSSL--LYWGGVTWRVNAPLSISASVYHTQFRNPHGGPTLGALLVD 306 Query: 305 YFLSKRTDVYMNVGYMKNSGSLNLGVDGQPGIIGPGTLPGQAQAGLAIGVRHTF 358 Y LSKRTDVY Y+ N ++G+ G G PG QAG+ +G+RH F Sbjct: 307 YSLSKRTDVYAEGAYVSNRSFSDVGIRG----TGVDIAPGMDQAGVTVGIRHIF 356 >ref|YP_001116739.1| porin [Burkholderia vietnamiensis G4] ref|YP_001584750.1| porin [Burkholderia multivorans ATCC 17616] gb|ABO57274.1| porin, Gram-negative type [Burkholderia vietnamiensis G4] gb|ABX18458.1| porin Gram-negative type [Burkholderia multivorans ATCC 17616] Length = 357 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 131/356 (36%), Positives = 189/356 (53%), Gaps = 18/356 (5%) Query: 9 AGFLIVSFSLSIEAHAE--VTVYGVVDVGIEALSNAPVAGTKRGGTLIREQSANAQLSRI 66 AG L+++ SI AHA+ VT+YG+ DVGIE ++ P K + +R+QS N SR Sbjct: 14 AGALVLA---SIPAHAQSSVTLYGITDVGIEYANHVPSG--KTSSSAVRQQSGNLAGSRW 68 Query: 67 GFKGSETIDPCLKAIFKLDAAFFPDTGSLSPNGKLFHGSSYVGLSGCQGELTLGRHISLL 126 G KG+E + KAIF L+ F + G+L +G+LF +YVG+S G +TLGRH +LL Sbjct: 69 GLKGAEDLGGGYKAIFVLEGGFNLNNGTLGQSGRLFGRKAYVGVSTPYGTVTLGRHQNLL 128 Query: 127 YEEAYYFDPLSIF-AYSLPSMDVTGFGGRADNSIKYRRSLGSWTLTGFYSTGYSGAYEET 185 YE Y +D L+ +YS SMD + F RADNSI+Y ++ T YS G+ Sbjct: 129 YELMYKYDALTFNPSYSAQSMD-SQFVNRADNSIRYGLNIAGVTFAMLYSNGFDSTIPNG 187 Query: 186 A---GSPRIAREMSMSINYDDRFLAGGIAIDHLNGTTPDTKNQITDRIFLAGSLTFEKDK 242 A G+ ++ REMS +I YD ++ G+ D L GT+ T++ R L S F K Sbjct: 188 AQVPGATKVGREMSAAILYDRGPVSIGLTYDQLQGTSIATQSNTQSRALLGASYDFGMVK 247 Query: 243 IFAGYQHYHQTALNAIPVATYDLIWAGAQHAWSAQLNSAVGVFHQKYSTGQGSATLAAAY 302 AG + + P + L W G + SA L + V+H ++ G T+ A Sbjct: 248 ALAGVRWLDTRNTDTPPSSM--LYWGGLTYHVSAPLFVSASVYHTQFRNPHGGPTMGALL 305 Query: 303 LDYFLSKRTDVYMNVGYMKNSGSLNLGVDGQPGIIGPGTLPGQAQAGLAIGVRHTF 358 +DYFLSKRT++Y Y+ N N+G+ G G G Q G+ +G+RHTF Sbjct: 306 VDYFLSKRTELYAEGAYVNNRSYSNVGIRG----TGVDITTGADQTGVTVGIRHTF 357