BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0101.p (311 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_160298.1| hypothetical protein ebA5764 [Aromatoleum aroma... 261 7e-68 ref|YP_158087.1| hypothetical protein ebA1929 [Aromatoleum aroma... 259 3e-67 ref|YP_157196.1| hypothetical protein ebA329 [Aromatoleum aromat... 256 4e-66 ref|YP_004353405.1| hypothetical protein PSEBR_a2135 [Pseudomona... 244 2e-62 ref|ZP_07774654.1| BNR domain protein [Pseudomonas fluorescens W... 242 6e-62 >ref|YP_160298.1| hypothetical protein ebA5764 [Aromatoleum aromaticum EbN1] emb|CAI09397.1| conserved hypothetical protein, BNR domain protein [Aromatoleum aromaticum EbN1] Length = 351 Score = 261 bits (668), Expect = 7e-68, Method: Compositional matrix adjust. Identities = 142/310 (45%), Positives = 198/310 (63%), Gaps = 4/310 (1%) Query: 1 VAVGERGVVLLSDDGGKAWAQA-TVPTSVTLTAVQFPNARNGWAVGHAGVILHSEDGGGS 59 V+VG RG VLLSDDGGK W QA +VP+SV LTAV F N + GWAVGH+GV+LHS DGG + Sbjct: 44 VSVGPRGTVLLSDDGGKTWRQAGSVPSSVALTAVCFVNDKLGWAVGHSGVVLHSRDGGET 103 Query: 60 WRKQLDGDQAAKLILEFSEKYALANAGSPVAKSLSSAARQFMADGADKPFLDVFFINDRS 119 W +QLDG QAA+ +LE +E AL G A+ L A++ + DG DKP L V F N+R Sbjct: 104 WVRQLDGRQAAQRVLEEAE--ALEATGREGAERLLRDAQRMVEDGPDKPLLSVSFTNERR 161 Query: 120 GFVVGAFGLALKTEDGGATWQPFMQLLNNDEGSHLYSIKASGGRLVIAGERGFLAISNDA 179 G+ VGA+GLAL TEDGG +WQ FM L N G HLY I+A G RL+++GE+G L S+DA Sbjct: 162 GYAVGAYGLALATEDGGQSWQAFMARLPNPRGKHLYQIRADGARLLVSGEQGALFRSDDA 221 Query: 180 GKSFLSPELPYKGSLFAASVLPSGTIVVAGLKGNMFYADPGVLEFRKTQGGQNISYNATQ 239 G SF PY G+ F A L T++ GL+GN++ + G + + +I+ + Sbjct: 222 GLSFAEVRTPYPGTFFGALSLAEDTVLAYGLRGNVWRSGDGGTAWTQIALDHDITITSGV 281 Query: 240 VISDGRLIAMDQAGHLWISSDNGRSISLYSDFSPAPSLNSILQVSDGSIVGAGFRGMTRL 299 + DG ++ D++G L S D GRS S +P ++ +++Q+ DG++V +G RG++R+ Sbjct: 282 RLKDGAVVLADESGRLLRSDDQGRSFSALKAKAP-NAVTALVQIDDGALVMSGARGLSRV 340 Query: 300 EKKTNVNTGN 309 + V T N Sbjct: 341 DAAQLVVTEN 350 >ref|YP_158087.1| hypothetical protein ebA1929 [Aromatoleum aromaticum EbN1] emb|CAI07186.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1] Length = 374 Score = 259 bits (663), Expect = 3e-67, Method: Compositional matrix adjust. Identities = 140/310 (45%), Positives = 197/310 (63%), Gaps = 4/310 (1%) Query: 1 VAVGERGVVLLSDDGGKAWAQA-TVPTSVTLTAVQFPNARNGWAVGHAGVILHSEDGGGS 59 V+VG RG VLLSDDGGK W QA +VP+SV LTAV F N + GWAVGH+G++LHS DGG + Sbjct: 67 VSVGPRGTVLLSDDGGKTWRQAGSVPSSVALTAVCFVNDKLGWAVGHSGIVLHSRDGGET 126 Query: 60 WRKQLDGDQAAKLILEFSEKYALANAGSPVAKSLSSAARQFMADGADKPFLDVFFINDRS 119 W +QL+G QAA+ +LE E AL G A+ L A++ + DG DKP L V F N+R Sbjct: 127 WVRQLEGRQAAQQVLE--EAKALEATGREGAERLLRDAQRMVEDGPDKPLLSVSFTNERR 184 Query: 120 GFVVGAFGLALKTEDGGATWQPFMQLLNNDEGSHLYSIKASGGRLVIAGERGFLAISNDA 179 G+ VGA+GLAL TEDGG +WQ FM L N G HLY I+A G RL+++GE+G L S+DA Sbjct: 185 GYAVGAYGLALATEDGGQSWQAFMARLPNPRGKHLYQIRADGARLLVSGEQGALFRSDDA 244 Query: 180 GKSFLSPELPYKGSLFAASVLPSGTIVVAGLKGNMFYADPGVLEFRKTQGGQNISYNATQ 239 G SF PY G+ F A L T++ GL+GN++ + G + + +I+ + Sbjct: 245 GLSFAEVRTPYPGTFFGALSLAEDTVLAYGLRGNVWRSGDGGTAWTQIALDHDITITSGV 304 Query: 240 VISDGRLIAMDQAGHLWISSDNGRSISLYSDFSPAPSLNSILQVSDGSIVGAGFRGMTRL 299 + DG ++ D++G L S D GRS S +P ++ +++Q+ DG++V +G RG++R+ Sbjct: 305 RLKDGAVVLADESGRLLRSDDQGRSFSALKAKAP-NAVTALVQIDDGALVMSGARGLSRV 363 Query: 300 EKKTNVNTGN 309 + V T N Sbjct: 364 DAAQLVVTEN 373 >ref|YP_157196.1| hypothetical protein ebA329 [Aromatoleum aromaticum EbN1] emb|CAI06295.1| conserved hypothetical protein [Aromatoleum aromaticum EbN1] Length = 433 Score = 256 bits (654), Expect = 4e-66, Method: Compositional matrix adjust. Identities = 139/310 (44%), Positives = 198/310 (63%), Gaps = 4/310 (1%) Query: 1 VAVGERGVVLLSDDGGKAWAQA-TVPTSVTLTAVQFPNARNGWAVGHAGVILHSEDGGGS 59 V+VG RG VLLSDDGGK W QA +VP+SV LTAV F N + GWAVGH+G++LHS DGG + Sbjct: 126 VSVGPRGTVLLSDDGGKTWRQAGSVPSSVALTAVCFVNDKLGWAVGHSGIVLHSRDGGET 185 Query: 60 WRKQLDGDQAAKLILEFSEKYALANAGSPVAKSLSSAARQFMADGADKPFLDVFFINDRS 119 W +QL+G QAA+ +LE E AL G A+ L A++ + DG DKP L V F N+R Sbjct: 186 WVRQLEGRQAAQQVLE--EAKALEATGREGAERLLRDAQRMVEDGPDKPLLSVSFKNERR 243 Query: 120 GFVVGAFGLALKTEDGGATWQPFMQLLNNDEGSHLYSIKASGGRLVIAGERGFLAISNDA 179 G+VVGA+GLAL T DGG +WQ FM L N G HLY ++A G RL+I+GE+G L S+DA Sbjct: 244 GYVVGAYGLALATNDGGQSWQAFMARLPNPRGKHLYQVRADGARLLISGEQGALFRSDDA 303 Query: 180 GKSFLSPELPYKGSLFAASVLPSGTIVVAGLKGNMFYADPGVLEFRKTQGGQNISYNATQ 239 G SF PY G+ F A L T++ GL+GN++ + G + + +I+ + Sbjct: 304 GLSFAEVRTPYPGTFFGALSLAEDTVLAYGLRGNVWRSGDGGTAWTQIALDHDITITSGV 363 Query: 240 VISDGRLIAMDQAGHLWISSDNGRSISLYSDFSPAPSLNSILQVSDGSIVGAGFRGMTRL 299 + +G ++ D++G L S D+GRS S +P ++ +++Q+ DG++V +G RG++R+ Sbjct: 364 RLKNGAVVLADESGRLLRSDDHGRSFSALKAKAPN-AVTALVQIDDGALVMSGARGLSRV 422 Query: 300 EKKTNVNTGN 309 + V T N Sbjct: 423 DAAQLVVTEN 432 >ref|YP_004353405.1| hypothetical protein PSEBR_a2135 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA68401.1| Conserved hypothetical protein; putative exported protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 358 Score = 244 bits (622), Expect = 2e-62, Method: Compositional matrix adjust. Identities = 136/305 (44%), Positives = 194/305 (63%), Gaps = 2/305 (0%) Query: 1 VAVGERGVVLLSDDGGKAWAQATVPTSVTLTAVQFPNARNGWAVGHAGVILHSEDGGGSW 60 VAVGERG+VLLSDD G++W QA VP SV+LTAVQF +ARNGWAVGHAGV+L + DGG W Sbjct: 51 VAVGERGLVLLSDDNGQSWRQAPVPVSVSLTAVQFVDARNGWAVGHAGVVLVTRDGGEHW 110 Query: 61 RKQLDGDQAAKLILEFSEKYALANAGSPVAKSLSSAARQFMADGADKPFLDVFFINDRSG 120 QLDG +AA+L L+ ++ A A A + +ADGADKPFL + FI+ + G Sbjct: 111 TLQLDGARAAQLELDAAKADQATAANPDDALVRVQNAERLVADGADKPFLALEFIDAQHG 170 Query: 121 FVVGAFGLALKTEDGGATWQPFMQLLNNDEGSHLYSIKASGGRLVIAGERGFLAISNDAG 180 +VGA+GLAL T DGGATWQ M + N G HLY+I G R +AGE+G+LA S+D Sbjct: 171 LIVGAYGLALWTADGGATWQSLMGHIANPNGMHLYAISHQGPRWFLAGEQGYLARSDDDA 230 Query: 181 KSFLSPELPYKGSLFAASVLPSGTIVVAGLKGNMFYADPGVLEFRKTQGGQNISYNATQV 240 SF E PY+GS F G ++V GL+GN F ++ G F+ IS+N Sbjct: 231 VSFSQLESPYEGSFFTLQSRADGALLVGGLRGNAFISNDGGASFQHLSVPMPISFNDATR 290 Query: 241 ISDGRLIAMDQAGHLWISSD-NGRSISLYSDFSPAPSLNSILQVSDGSIVGAGFRGMTRL 299 ++ G+++ ++Q G L+++ + NG ++ + P ++S+++ +DGS++ AGF G+ RL Sbjct: 291 LAGGQVLLVNQGGALFLNGEQNGATLQPLGEPLGKP-VSSVIEAADGSLIVAGFTGLQRL 349 Query: 300 EKKTN 304 + + Sbjct: 350 AQPST 354 >ref|ZP_07774654.1| BNR domain protein [Pseudomonas fluorescens WH6] gb|EFQ64205.1| BNR domain protein [Pseudomonas fluorescens WH6] Length = 345 Score = 242 bits (617), Expect = 6e-62, Method: Compositional matrix adjust. Identities = 137/302 (45%), Positives = 191/302 (63%), Gaps = 2/302 (0%) Query: 1 VAVGERGVVLLSDDGGKAWAQATVPTSVTLTAVQFPNARNGWAVGHAGVILHSEDGGGSW 60 VAVGERG+VLLSDD G++W QATVP SV+LTAV+F +A+ GWAVGHAGV+L + DGG W Sbjct: 38 VAVGERGLVLLSDDNGQSWRQATVPVSVSLTAVRFVDAQKGWAVGHAGVVLATVDGGEHW 97 Query: 61 RKQLDGDQAAKLILEFSEKYALANAGSPVAKSLS-SAARQFMADGADKPFLDVFFINDRS 119 QLDG +AA+L L + K A A P A + A + +ADG DKPFL + F++ Sbjct: 98 TLQLDGLRAAQLELN-AAKAGQATATDPDAALIRVQNAERLVADGPDKPFLALEFVDAHR 156 Query: 120 GFVVGAFGLALKTEDGGATWQPFMQLLNNDEGSHLYSIKASGGRLVIAGERGFLAISNDA 179 G +VGA+GLAL T DGGATWQ M + N G HLY+I G R +AGE+G+LA S+D Sbjct: 157 GLIVGAYGLALLTTDGGATWQSLMGQIANPNGLHLYAISRQGTRWFLAGEQGYLARSDDD 216 Query: 180 GKSFLSPELPYKGSLFAASVLPSGTIVVAGLKGNMFYADPGVLEFRKTQGGQNISYNATQ 239 SF + PY+GS F G +VVAGLKGN F + + F++ IS+N Sbjct: 217 ALSFSQLDSPYEGSFFTLQNRADGALVVAGLKGNAFVSRDAGVSFQRLSVPVPISFNDAT 276 Query: 240 VISDGRLIAMDQAGHLWISSDNGRSISLYSDFSPAPSLNSILQVSDGSIVGAGFRGMTRL 299 ++DG+L+ ++Q G L+ +S+ + L ++S+++ +DGS++ AGF G+ RL Sbjct: 277 RLADGQLLLVNQGGMLFRNSEQTGAALLPLGAPLGKPVSSVIEAADGSLIVAGFTGLQRL 336 Query: 300 EK 301 + Sbjct: 337 AQ 338