BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0093.p (252 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_299997.1| IclR family transcriptional regulator [Ralstoni... 278 4e-73 ref|YP_001630032.1| transcriptional regulatory protein [Bordetel... 205 5e-51 ref|YP_718171.1| IclR family transcriptional regulator [Sphingom... 201 1e-49 ref|ZP_08867910.1| IclR family transcriptional regulator [Azospi... 199 5e-49 ref|YP_003592841.1| IclR family transcriptional regulator [Caulo... 196 3e-48 >ref|YP_299997.1| IclR family transcriptional regulator [Ralstonia eutropha JMP134] gb|AAZ65153.1| transcriptional regulator, IclR family [Ralstonia eutropha JMP134] Length = 286 Score = 278 bits (712), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 132/251 (52%), Positives = 183/251 (72%), Gaps = 1/251 (0%) Query: 3 ATDRSLSLLRLFTLEQPSWTAEQVSSKLQVSISTAYRYLLALEEIGLIAAVTTGRYVLGP 62 ATDR+L +L LF+L++P WT +++ +L VS S+AYRYL L E+GL+A+ RYVLGP Sbjct: 24 ATDRALGVLTLFSLDKPMWTVDEIGEQLGVSSSSAYRYLSNLLELGLVASAGAKRYVLGP 83 Query: 63 AIIQLDRQIQLTDPLLTAARPIMNDLVAYAPKGSVVLLCRSFSDKVLCIHQVVGDSSPPE 122 AIIQLDRQIQLTDP+L AARP+M +LV +AP GSV+LLCR+F D VLC+HQV+G P Sbjct: 84 AIIQLDRQIQLTDPMLQAARPVMAELVDFAPSGSVMLLCRAFGDSVLCVHQVLGKGPQPI 143 Query: 123 VSYDRGRPMPLFRGATSKVILAGLPARKLKSLYADNTPAISQAGLGESWDAFKSKMSSLR 182 VSY+RGRPM +FRGATS++ILA R L+++Y + I+ AGLG+ W F+ +S LR Sbjct: 144 VSYERGRPMLMFRGATSRIILAFQQTRMLQAIYEKHHVEIAAAGLGDDWSTFRLGLSRLR 203 Query: 183 KMGHDVTHGELDAGRIGISVPVLNEERQATGSISYVVTD-DIDARLIPRLISLLKTGSQE 241 +MG+ V+HGE+D GR+GI+ P+L E+ +A GS+SYVV + +D I RL +L + E Sbjct: 204 RMGYAVSHGEIDPGRVGIAAPILGEDGRAAGSLSYVVAEASVDQGSIARLSHILMGAAHE 263 Query: 242 IELTLTKQKDE 252 I +++ Q + Sbjct: 264 ISISMLAQGKD 274 >ref|YP_001630032.1| transcriptional regulatory protein [Bordetella petrii DSM 12804] emb|CAP41762.1| transcriptional regulatory protein [Bordetella petrii] Length = 259 Score = 205 bits (521), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 105/243 (43%), Positives = 145/243 (59%), Gaps = 1/243 (0%) Query: 1 MGATDRSLSLLRLFTLEQPSWTAEQVSSKLQVSISTAYRYLLALEEIGLIAAVTTGRYVL 60 M ATD+ S+ LFT E+P WT ++ + +L +STAYR+ +L + GLI A GRYVL Sbjct: 1 MNATDKLFSIFSLFTYERPEWTVDEAAEQLGYPVSTAYRFFKSLSDEGLIVAYAAGRYVL 60 Query: 61 GPAIIQLDRQIQLTDPLLTAARPIMNDLVAYAPKGSVVLLCRSFSDKVLCIHQVVGDSSP 120 GPAIIQLDRQI+L DPL+ A IM L A +P LLCR + ++V+C+HQ S Sbjct: 61 GPAIIQLDRQIRLQDPLIKAGSSIMKRLAAESPFDGTFLLCRLYRNQVICVHQESKGFSD 120 Query: 121 PEVSYDRGRPMPLFRGATSKVILAGLPARKLKSLYADNTPAISQAGLGESWDAFKSKMSS 180 VSY+RGR MPL RGA SK+ILA LP R +++ N + GLG W+ K + Sbjct: 121 LTVSYERGRLMPLHRGAASKIILAHLPVRPIRAYQTANAKDVEAVGLGVDWETMKQSLRR 180 Query: 181 LRKMGHDVTHGELDAGRIGISVPVLNEERQATGSISYV-VTDDIDARLIPRLISLLKTGS 239 +RK G +T ELD G IGI+ P+ + GS+ V + +D + +L+P + L + Sbjct: 181 IRKAGICITRAELDNGAIGIAAPLFLIDGSIVGSLGLVLLEEDTNKQLLPAISEELMAAA 240 Query: 240 QEI 242 EI Sbjct: 241 AEI 243 >ref|YP_718171.1| IclR family transcriptional regulator [Sphingomonas sp. KA1] dbj|BAF03459.1| putative transcriptional regulator, IclR family [Sphingomonas sp. KA1] Length = 253 Score = 201 bits (510), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 101/253 (39%), Positives = 153/253 (60%), Gaps = 1/253 (0%) Query: 1 MGATDRSLSLLRLFTLEQPSWTAEQVSSKLQVSISTAYRYLLALEEIGLIAAVTTGRYVL 60 MG D++L L LF++E+P WT E +S+ + STAYRY +L E GLI + GRYV+ Sbjct: 1 MGTVDKALGLAGLFSIEEPQWTVEAAASRTGIPTSTAYRYFRSLNEAGLITDFSAGRYVI 60 Query: 61 GPAIIQLDRQIQLTDPLLTAARPIMNDLVAYAPKGSVVLLCRSFSDKVLCIHQVVGDSSP 120 GPA+I LDR + TDPL+ AA+ M++L+ P SVV+L R F +V+C+ Q P Sbjct: 61 GPAVIHLDRVARGTDPLVLAAQDAMDNLINRGPDRSVVILARIFDRRVMCVDQRRKGYHP 120 Query: 121 PEVSYDRGRPMPLFRGATSKVILAGLPARKLKSLYADNTPAISQAGLGESWDAFKSKMSS 180 +SY+RGRPMPL+RG+ SK+ILA L R + + D+ I +AGLG +F+ + Sbjct: 121 LTISYERGRPMPLYRGSVSKIILAHLSPRLIVRCFHDDRIDIEEAGLGSDLKSFRRNLRL 180 Query: 181 LRKMGHDVTHGELDAGRIGISVPVLNEERQATGSISYVVTDDIDAR-LIPRLISLLKTGS 239 +R+ G+ VTHGE+D G IGI+ P+L+ +S VV ++ I +L++L++ + Sbjct: 181 IRRAGYSVTHGEVDKGVIGIAAPILSPNGDVFACLSLVVAEETTPEGSIEKLVALVRKEA 240 Query: 240 QEIELTLTKQKDE 252 + +L D Sbjct: 241 LAVTASLGLMSDN 253 >ref|ZP_08867910.1| IclR family transcriptional regulator [Azospirillum amazonense Y2] gb|EGY02498.1| IclR family transcriptional regulator [Azospirillum amazonense Y2] Length = 252 Score = 199 bits (505), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 107/220 (48%), Positives = 135/220 (61%) Query: 1 MGATDRSLSLLRLFTLEQPSWTAEQVSSKLQVSISTAYRYLLALEEIGLIAAVTTGRYVL 60 M DR LS+L LFT+E P WT E+ + L +S STAY Y +L E GL+ A GRY + Sbjct: 1 MSTADRVLSVLGLFTIEAPEWTVEEAARALGLSNSTAYEYFRSLVEAGLLVASKAGRYSV 60 Query: 61 GPAIIQLDRQIQLTDPLLTAARPIMNDLVAYAPKGSVVLLCRSFSDKVLCIHQVVGDSSP 120 GPAII+LDR + DPL AA + DLVA ++ LLCR + KV+C+ Q V Sbjct: 61 GPAIIELDRVTRRFDPLTNAASGTLRDLVADLEVEAIGLLCRIYRLKVMCVDQYVRRPPT 120 Query: 121 PEVSYDRGRPMPLFRGATSKVILAGLPARKLKSLYADNTPAISQAGLGESWDAFKSKMSS 180 +SY+RGRPMPL RGA SK+ILA L R L+ Y + A++ AGLG+SWDAFK + Sbjct: 121 FAISYERGRPMPLGRGAASKIILANLAPRPLRRFYDGDPAAVAAAGLGDSWDAFKRTVRQ 180 Query: 181 LRKMGHDVTHGELDAGRIGISVPVLNEERQATGSISYVVT 220 +RK G T GELDAG +GIS PV GSI VV+ Sbjct: 181 IRKPGVLATVGELDAGLMGISAPVFGAGGDVLGSIGLVVS 220 >ref|YP_003592841.1| IclR family transcriptional regulator [Caulobacter segnis ATCC 21756] gb|ADG10223.1| transcriptional regulator, IclR family [Caulobacter segnis ATCC 21756] Length = 269 Score = 196 bits (498), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 109/226 (48%), Positives = 141/226 (62%), Gaps = 1/226 (0%) Query: 1 MGATDRSLSLLRLFTLEQPSWTAEQVSSKLQVSISTAYRYLLALEEIGLIAAVTTGRYVL 60 M DR LS+L+LFT+ +P WT E + +L+V STAYRY +L + GLI T GRYV+ Sbjct: 1 MTTADRVLSVLQLFTMAEPEWTVEDAARRLEVPTSTAYRYFRSLVDAGLIVNFTAGRYVI 60 Query: 61 GPAIIQLDRQIQLTDPLLTAARPIMNDLVAYAPKGSVVLLCRSFSDKVLCIHQVVGDSSP 120 GPAII+LDRQ + DPL+ AA+P ++ LV V LLCR + V+C+ Q P Sbjct: 61 GPAIIELDRQTRHLDPLILAAQPTLSALVEPLETTGVSLLCRIYRRTVICVDQGRPPGRP 120 Query: 121 PEVSYDRGRPMPLFRGATSKVILAGLPARKLKSLYADNTPAISQAGLGESWDAFKSKMSS 180 E+SY+RGRPMPLFRGA SK I A + AR LK + D+ A + AGLG W+ FK+KM Sbjct: 121 LEISYERGRPMPLFRGAASKSITAHITARTLKRYFEDDIEAAAAAGLGADWETFKAKMRE 180 Query: 181 LRKMGHDVTHGELDAGRIGISVPVLNEERQATGSISYV-VTDDIDA 225 +RK VT GELD G +G+S P+ + GSI V V IDA Sbjct: 181 IRKAEVCVTCGELDQGLLGVSAPIFAPDGDILGSIGVVLVRAQIDA 226