BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0084.p (401 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_970675.1| phage integrase family protein [Acidovorax citr... 474 e-131 ref|YP_004535068.1| putative integrase [Novosphingobium sp. PP1Y... 205 1e-50 ref|YP_001971732.1| putative phage integrase protein [Stenotroph... 194 2e-47 ref|YP_122540.1| hypothetical protein lpp0194 [Legionella pneumo... 188 1e-45 ref|YP_001100570.1| putative integrase [Herminiimonas arsenicoxy... 187 2e-45 >ref|YP_970675.1| phage integrase family protein [Acidovorax citrulli AAC00-1] gb|ABM32901.1| phage integrase family protein [Acidovorax citrulli AAC00-1] Length = 403 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 240/392 (61%), Positives = 291/392 (74%), Gaps = 7/392 (1%) Query: 1 MGRRSSTGGVTPAGDRIQVRFTYQGKDMRPTLNLKPTAVNLKHAHRLREQILFDIKAGQF 60 MGR++S+GGV P G+RI+VRFT++GK + PTL+L+PTA NLKHA RLR I+ +I G+F Sbjct: 1 MGRKASSGGVRPRGNRIEVRFTWEGKQVSPTLDLRPTAANLKHAARLRATIVEEINQGKF 60 Query: 61 NLAEFFPDYRN----AELSESTHRSFLQWAELWGQLSARSLENSTIRIYKRHLKAYWVAK 116 AE FPDY+N ++ R F WA++WG+LSAR LE+S+ +Y RHL AYW+ Sbjct: 61 RFAEHFPDYKNLTAVQPATDEESRLFRDWAKVWGRLSARGLEHSSHAVYLRHLAAYWLPV 120 Query: 117 FGDLLPKQITHEKVLEHLAYLATSRIHPVSGKLTKPLGRKTQNNILIPLRGVFELICKSD 176 FG L P++ITH VLE LA L+ R+ +GK + L RKTQNNILIPLRGVFELICK+ Sbjct: 121 FGHLPPERITHVMVLERLADLSAPRLDEKTGKTRRALARKTQNNILIPLRGVFELICKAR 180 Query: 177 PYVKDPTDGIDNLKVQKAQPDPFTAEEVELILAEIEDEALS---DYFEFSCFAGLRISEQ 233 V DPTDGIDN KVQKA PDPF+ +EVE+IL +E++A S DYFEFS FAG R SEQ Sbjct: 181 TEVVDPTDGIDNQKVQKAMPDPFSPDEVEVILRALEEQAGSTWADYFEFSFFAGFRASEQ 240 Query: 234 IALLWEDVDLRQGTVKVRRARVLAEDKERTKTGYEREVELNARALAVIKRQRARTQAKGI 293 IALLWEDVD R T V R RVL +DK+RTKT ER+VELN RA I+RQRART+A G Sbjct: 241 IALLWEDVDHRSRTALVWRTRVLTKDKDRTKTNVERQVELNDRAYNAIRRQRARTEAAGR 300 Query: 294 YVFLNPSTGLRWNDEQEQRREWVQVLRAAKVRYRPPKECRDTSVTLSLMAGADPLWVAKQ 353 VF NP+TG + DEQ QRR W LR A VRYR PKECRDTSVTL+LMAGA+P+WVA Q Sbjct: 301 EVFWNPNTGKPFIDEQSQRRVWRAALRKAGVRYRAPKECRDTSVTLALMAGANPMWVALQ 360 Query: 354 HGHSVTVMMKSYARFIPRADKGRNLEAVNAAL 385 HGHSV VMM+ YA++IP AD+G N AVNAA+ Sbjct: 361 HGHSVQVMMRDYAKWIPSADRGANRAAVNAAI 392 >ref|YP_004535068.1| putative integrase [Novosphingobium sp. PP1Y] emb|CCA93250.1| putative integrase [Novosphingobium sp. PP1Y] Length = 386 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 136/383 (35%), Positives = 204/383 (53%), Gaps = 26/383 (6%) Query: 1 MGRRSSTGGVTPAGDRIQVRFTYQGKDMRPTLNLKPTAVNLKHAHRLREQILFDIKAGQF 60 MGRR GV P I+V F + G+ R TL+L+PT N+K A RL ++ +I+ G F Sbjct: 1 MGRRGRGSGVEPLKSCIRVTFVWLGRRCRETLDLQPTPANIKAAERLMAKVFQEIELGVF 60 Query: 61 NLAEFFPDYRNAELSESTHRSFLQWAELWGQLSARSLENSTIRIYKRHLKAYWVAKFGDL 120 + FP ++A+ + R F A W L + E ST++ Y ++ W FG+ Sbjct: 61 DYETTFP--KSAQTAGV--RGFTTIAREW--LETVTAEKSTMQGYTAAIEKIWGPAFGE- 113 Query: 121 LPKQITHEKVLEHLAYLATSRIHPVSGKLTKPLGRKTQNNILIPLRGVFELICKSDPYVK 180 LA + S I KL K + KT NN LIPLR +F + Sbjct: 114 -----------RQLASIKPSEIKREIAKLAKRVSGKTVNNNLIPLRAIFATAVDDGIIDR 162 Query: 181 DPTDGIDNLKVQKAQPDPFTAEEVELILAEIE---DEALSDYFEFSCFAGLRISEQIALL 237 P + I NL Q PDPF EE+E IL + D+ + +++EF+ G+R SEQI + Sbjct: 163 SPLERIRNLSHQAPMPDPFDREEMERILVYLRDYFDQQVWNWYEFAFGTGMRPSEQIVVQ 222 Query: 238 WEDVDLRQGTVKVRRARVLAEDKERTKTGYEREVELNARALAVIKRQRARTQAKG--IYV 295 W D+D ++ T++V+RARV K TKT R+V+L +R +AV++RQ+ + +G V Sbjct: 223 WSDIDWKRRTIRVQRARVRHVLKS-TKTRSARDVDLTSRMIAVLQRQKVHSFMRGADTPV 281 Query: 296 FLNPSTGLRWNDEQEQRREWVQ-VLRAAKVRYRPPKECRDTSVTLSLMAGADPLWVAKQH 354 F+NP T W D Q+QR+ + LRA +R R + R T T +LMAG +P ++++Q Sbjct: 282 FINPVTNTPWPDVQDQRKLYFHPALRALGIRSRDAYQTRHTYATTALMAGVNPAYISRQL 341 Query: 355 GH-SVTVMMKSYARFIPRADKGR 376 GH S ++ K Y+++I AD GR Sbjct: 342 GHRSAAMLFKHYSKWIDGADGGR 364 >ref|YP_001971732.1| putative phage integrase protein [Stenotrophomonas maltophilia K279a] emb|CAQ45429.1| putative phage integrase protein [Stenotrophomonas maltophilia K279a] Length = 391 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 140/399 (35%), Positives = 200/399 (50%), Gaps = 29/399 (7%) Query: 9 GVTPAGD-RIQVRFTYQGKDMRPTLNLKPTAVNLKHAHRLREQILFDIKAGQFNLAEFFP 67 GV PA I++ F Y+GK R L L PTA NL++ L QI +I+ G F+ A FP Sbjct: 8 GVRPASQGSIEITFHYRGKRCRERLKLPPTARNLRYCENLLGQIKIEIEKGTFDYATHFP 67 Query: 68 DYRNAELSESTHRSFLQWAEL---WGQLSARSLENSTIRIYKRHLKAYWVAKFGDLLPKQ 124 + + A + + ++ W LE+S++ Y+R ++ V + G + + Sbjct: 68 NSKRARQVATRPAALDNLEQVLTRWLAQKEPELEHSSLIGYRRIVENILVPRCGAIALRD 127 Query: 125 ITHEKVLEHLAYLATSRIHPVSGKLTKPLGRKTQNNILIPLRGVFELICKSDPYVKDPTD 184 + E +A S K NN+L PLRG + D +P D Sbjct: 128 FDRIALKELVATFDES------------TSAKRINNVLGPLRGALDEAVADDLIPSNPLD 175 Query: 185 GIDNLKVQKAQP----DPFTAEEVELILAEIEDEALSDYFEFSCFAGLRISEQIALLWED 240 G + KA DPFT EEV+ ILA ++ + +Y +F+ GLR SE I L W D Sbjct: 176 GFRVKRRAKANAREEVDPFTPEEVQAILAACREDQVRNYCQFNFATGLRTSEMIGLCWSD 235 Query: 241 VDLRQGTVKVRRARVLAEDKE-RTKTGYEREVELNARALAVIKRQRARTQAKGIYVFLNP 299 +D R+GTVK+RRA V+ + K +T++G REV+L A+ +K QRA T G +VF +P Sbjct: 236 IDWRKGTVKIRRAWVMGKMKAPKTESGV-REVQLLQPAIDALKAQRAHTATAGEFVFHDP 294 Query: 300 STGLRWNDEQEQRR-EWVQVLRAAKVRYRPPKECRDTSVTLSLMAGADPLWVAKQHGH-S 357 T RW +Q R EW + LR A VRYR P + R T + +L AG + +WVA+Q GH Sbjct: 295 RTNARWGSDQSIRAGEWQRALRKAGVRYRYPYQMRHTFASQALSAGENVMWVARQMGHRD 354 Query: 358 VTVMMKSYARFIPR--ADKGRNLEAVNAALKLADSAVNP 394 T+ K Y R+IP D G V A A +A NP Sbjct: 355 WTITAKKYGRWIPSMVPDAGAKTAEVWLA---ASAAANP 390 >ref|YP_122540.1| hypothetical protein lpp0194 [Legionella pneumophila str. Paris] emb|CAH11341.1| hypothetical protein lpp0194 [Legionella pneumophila str. Paris] Length = 402 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 132/385 (34%), Positives = 201/385 (52%), Gaps = 34/385 (8%) Query: 13 AGDRIQVRFTYQGKDMRPTLNLKPTAVNLKHAHRLREQILFDIKAGQFNLAEFFPDYRNA 72 G I++ F+Y+G R TL L+PT NLK+A RLR +I+ I G FN A++FPD + A Sbjct: 24 TGSAIRIIFSYRGVQCRETLKLEPTKANLKYAERLRGEIINAIALGTFNYADYFPDSKRA 83 Query: 73 EL-----SESTHRSFLQWAELWGQLSARSLENSTIRIYKRHLKAYWVAKFGDLLPKQITH 127 +L ++T LQ + ++ R+LE ST Y++ + + FG + ++++ Sbjct: 84 KLFGHAIIKATTAELLQ---DYMAIAERTLEASTYNGYRKVCETHLYPAFGKIPIRELSP 140 Query: 128 EKVLEHLAYLATSRIHPVSGKLTKPLGRKTQNNILIPLRGVFELICKSDPYVKDPTD--- 184 + + L + KT NIL PLR + + ++P D Sbjct: 141 VIIRNWITGLNVTV--------------KTVRNILTPLRNMLDQAMNDGIIERNPLDRLV 186 Query: 185 --GIDNLKVQKA--QPDPFTAEEVELILAEIEDEALSDYFEFSCFAGLRISEQIALLWED 240 + N K K+ + DPF +E++ IL +A + F+F+ F+GLR SE IAL W D Sbjct: 187 LSKLLNKKTSKSDWEVDPFDQDEIKAILDAATGQA-RNLFQFAFFSGLRTSELIALEWND 245 Query: 241 VDLRQGTVKVRRARVLAEDK-ERTKTGYEREVELNARALAVIKRQRARTQAKGIYVFLNP 299 +D +GTV+V +A VL ++K +TK+G R+V L A +K Q+A T +G VF NP Sbjct: 246 IDWLKGTVRVSKAVVLKQEKGTKTKSGV-RDVLLLPPAFDALKNQKAFTYLEGSRVFYNP 304 Query: 300 STGLRW-NDEQEQRREWVQVLRAAKVRYRPPKECRDTSVTLSLMAGADPLWVAKQHGHSV 358 T W D Q ++ W +L+ A VRYR P + R T ++ L AG +PLW+A Q GH Sbjct: 305 RTNTPWETDGQIRKTCWTHLLKKAGVRYRNPYQTRHTYASMLLSAGENPLWLATQMGHRD 364 Query: 359 TVM-MKSYARFIPRADKGRNLEAVN 382 T M +K Y R+IP + VN Sbjct: 365 TEMIIKHYGRWIPDKSTVAGYQPVN 389 >ref|YP_001100570.1| putative integrase [Herminiimonas arsenicoxydans] emb|CAL62448.1| Putative integrase [Herminiimonas arsenicoxydans] Length = 387 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 134/396 (33%), Positives = 202/396 (51%), Gaps = 32/396 (8%) Query: 1 MGRRSSTGGVTPAGDRIQVRFTYQGKDMRPTLNL-----KPTAVNLKHAHRLREQILFDI 55 MG R+S GV I++ FT+QGK + T+ L PT N+K+A R+ ++ + Sbjct: 1 MGPRTS--GVEVRETSIRIIFTFQGKQRKETICLDNEPLHPTPANIKYATRIAAEVRDKV 58 Query: 56 KAGQFNLAEFFPDYRNAELSE-STHRSFLQWAELWGQLSARSLENSTIRIYKRHLKAYWV 114 + G F A++FP R+A+ T F+ + + QL L+ ST+ YKR + +W Sbjct: 59 RTGLFAYADYFPQSRHAKPDHVGTVGEFMD--KWYAQLE---LKPSTLSEYKRMKENFWK 113 Query: 115 AKFGDLLPKQITHEKVLEHLAYLATSRIHPVSGKLTKPLGRKTQNNILIPLRGVFELICK 174 G +ITH + L SG + +T+NN+L LR VF L Sbjct: 114 PALGRKRVDKITHSDITTALK----------SGTWS---SNRTRNNMLYMLRAVFNLAVA 160 Query: 175 SDPYVKDPTDGIDNLKVQKAQPDPFTAEEVELILAEIED---EALSDYFEFSCFAGLRIS 231 K+P I+N + Q+ +PDPF+ E I+A + + + +++++EF F+GLR Sbjct: 161 DGVIHKNPCATIENAQWQRKKPDPFSIVEANRIIASLHEKQHQQVANFYEFMFFSGLRTG 220 Query: 232 EQIALLWEDVDLRQGTVKVRRARVLAEDKERTKTGYEREVELNARALAVIKRQRARTQA- 290 E + L W +VDL + V +R++ V E +E TKT ER V+L RAL +KRQ+A T Sbjct: 221 EGLGLDWANVDLHKRIVVIRQSFVRGEMQE-TKTSSERTVKLTNRALDALKRQKAWTLLD 279 Query: 291 KGIYVFLNPSTGLRWNDEQE-QRREWVQVLRAAKVRYRPPKECRDTSVTLSLMAGADPLW 349 K VF NPST W EQ W L+ +RYR P R T T+ LM+GA P + Sbjct: 280 KSGRVFHNPSTNRPWAKEQNISEPYWKPALKLLGIRYRRPYNTRATYATIGLMSGARPAY 339 Query: 350 VAKQHGHSVTVMMKSYARFIPRADKGRNLEAVNAAL 385 +A Q GHS+ V + YA +I D R + + A + Sbjct: 340 MAAQLGHSLEVFYRDYADWIADQDDDREMGKIEAQI 375