BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0075.p (301 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775554.1| uracil-DNA glycosylase [Herbaspirillum serop... 407 e-112 ref|YP_004753078.1| DNA polymerase, bacteriophage-type [Collimon... 348 8e-94 ref|YP_001353212.1| DNA polymerase bacteriophage-type [Janthinob... 343 3e-92 ref|YP_001100043.1| putative DNA polymerase-related protein, bac... 340 2e-91 ref|ZP_08273281.1| putative DNA polymerase-like protein, bacteri... 263 2e-68 >ref|YP_003775554.1| uracil-DNA glycosylase [Herbaspirillum seropedicae SmR1] gb|ADJ63646.1| uracil-DNA glycosylase protein [Herbaspirillum seropedicae SmR1] Length = 340 Score = 407 bits (1047), Expect = e-112, Method: Compositional matrix adjust. Identities = 216/330 (65%), Positives = 247/330 (74%), Gaps = 36/330 (10%) Query: 2 SQNTFAASARVLEEIGVGPVWVRRHLAVETAEAEA----AATPVAA-----APVPAPQRA 52 +N F +S +L+ +G+GPVWVRR LAVE + +A +ATP+AA V P RA Sbjct: 7 QENGFGSSLALLDALGIGPVWVRRELAVEEVQEQAQQPASATPIAAPVEAVGAVEQPSRA 66 Query: 53 -AQPAARPAPA---PA------------------PAPAQDDGLPP-WLNEMSDADMAPPG 89 +PA P P PA AP Q++G PP WL+EM A P Sbjct: 67 PVEPAREPTPVAERPAVQAPPAGAPKAPAAPVPRSAPVQEEGGPPAWLDEMDFAASLEPV 126 Query: 90 FMPNDDEDDEPVIRINPAIA---TMDWAKLKETVAECRQCGLCNGRKKTVFGVGDEKAKW 146 +P + EDDEP+ ++P IA MDW +LKE VA+CR+CGLC GRKKTVFGVGDEKAKW Sbjct: 127 LIP-EGEDDEPMPAVDPVIARIKQMDWPQLKEQVADCRRCGLCQGRKKTVFGVGDEKAKW 185 Query: 147 LFIGEGPGRNEDMQGEPFVGPAGKLLDNMLVAMGLKRGENAYIANIVKCRPTDEAGKDRP 206 LFIGEGPGRNED+QGEPFVGPAGKLLDNMLV+MG+KRG+NAYIANIVKCRPTDE G+DRP Sbjct: 186 LFIGEGPGRNEDIQGEPFVGPAGKLLDNMLVSMGVKRGDNAYIANIVKCRPTDENGRDRP 245 Query: 207 PSAQEVASCLPYLQRQIALIQPTVLVALGKTAALSLLGLDPATPVSKLRGTVHRYQGLPL 266 PS QEVASCLPYLQRQI LIQPTVLVALGKTAA+SLLGLDP TPV++LRGTVHRYQ LPL Sbjct: 246 PSPQEVASCLPYLQRQIELIQPTVLVALGKTAAISLLGLDPTTPVARLRGTVHRYQELPL 305 Query: 267 VVTYHPAYLLRQLGDKSKAWADLCLAMTTY 296 VVTYHPAYLLR L DKSK WADLCLAM+TY Sbjct: 306 VVTYHPAYLLRSLQDKSKTWADLCLAMSTY 335 >ref|YP_004753078.1| DNA polymerase, bacteriophage-type [Collimonas fungivorans Ter331] gb|AEK62255.1| DNA polymerase, bacteriophage-type [Collimonas fungivorans Ter331] Length = 282 Score = 348 bits (892), Expect = 8e-94, Method: Compositional matrix adjust. Identities = 182/296 (61%), Positives = 210/296 (70%), Gaps = 29/296 (9%) Query: 12 VLEEIGVGPVWVRRHLAVETAEAEAAATPVAAAPVPAPQRAAQPAARPAPAPAPAPAQDD 71 L+EIG+GP+W+RR + +AE A +PA Q PAP QD Sbjct: 10 FLDEIGLGPLWLRRDGGLASAEPIEADDMAPMEEIPAAALHGQ-----QPAPVAHAVQDK 64 Query: 72 GLPPWLNEMSDADMAPPGFMPNDDEDDEPVIRINPAI------ATMDWAKLKETVAECRQ 125 A+++ G DDEP+ + A+ A MDW +L+ VA C Sbjct: 65 -----------AEISAWG-------DDEPISAPSAAVHAAQSPAAMDWTQLQAAVAGCTA 106 Query: 126 CGLCNGRKKTVFGVGDEKAKWLFIGEGPGRNEDMQGEPFVGPAGKLLDNMLVAMGLKRGE 185 CGLC GRK TVFGVGD KAKWLFIGEGPGRNED+QGEPFVGPAGKLLDN+L+AMGLKRG+ Sbjct: 107 CGLCQGRKNTVFGVGDSKAKWLFIGEGPGRNEDIQGEPFVGPAGKLLDNILLAMGLKRGD 166 Query: 186 NAYIANIVKCRPTDEAGKDRPPSAQEVASCLPYLQRQIALIQPTVLVALGKTAALSLLGL 245 NAYIANIVKCRPTD G+DRPP+A EVA+C+PYLQRQI LIQPT+LVALGKTAALSLLGL Sbjct: 167 NAYIANIVKCRPTDGTGRDRPPAADEVAACMPYLQRQIELIQPTILVALGKTAALSLLGL 226 Query: 246 DPATPVSKLRGTVHRYQGLPLVVTYHPAYLLRQLGDKSKAWADLCLAMTTYADTTD 301 D ATPVSKLRGTVHRY PLVVTYHPAYLLRQLGDK K W+DLCLAM+ YA+ + Sbjct: 227 DAATPVSKLRGTVHRYADRPLVVTYHPAYLLRQLGDKGKVWSDLCLAMSAYANAAE 282 >ref|YP_001353212.1| DNA polymerase bacteriophage-type [Janthinobacterium sp. Marseille] gb|ABR88341.1| DNA polymerase bacteriophage-type [Janthinobacterium sp. Marseille] Length = 286 Score = 343 bits (879), Expect = 3e-92, Method: Compositional matrix adjust. Identities = 175/289 (60%), Positives = 207/289 (71%), Gaps = 14/289 (4%) Query: 13 LEEIGVGPVWVRRHLAVETAEAEAAATPVAAAPVPAPQRAAQPAARPAPAPAPAPAQDDG 72 L+E+G+GPVW +R A++ E E+A PV A + +A PA + Sbjct: 11 LQEMGLGPVWSQRSAALQALELESA-------PVVEMLEAVEVSAPPAVPLRQQVVAEQS 63 Query: 73 LPPWLNEMSDADMAPPGFMPNDDEDDEPVIRINPAIATMDWAKLKETVAECRQCGLCNGR 132 L W +E A + P V++ IA+M W +LKE V+ C +CGLC GR Sbjct: 64 LSAWGDETPAAPVLAP-------AAVSAVLQPARDIASMGWEQLKEVVSNCTECGLCKGR 116 Query: 133 KKTVFGVGDEKAKWLFIGEGPGRNEDMQGEPFVGPAGKLLDNMLVAMGLKRGENAYIANI 192 +TVFGVGD+KAKWLF+GEGPGRNED QGEPFVGPAGKLLDNM +AMGLKRGEN YIANI Sbjct: 117 TQTVFGVGDQKAKWLFVGEGPGRNEDFQGEPFVGPAGKLLDNMFIAMGLKRGENTYIANI 176 Query: 193 VKCRPTDEAGKDRPPSAQEVASCLPYLQRQIALIQPTVLVALGKTAALSLLGLDPATPVS 252 VKCRPTDE +DR P AQE +C+PYLQRQIAL+ PTV+VALGKTAALSLL LDPATPV+ Sbjct: 177 VKCRPTDENKRDRAPVAQESDACMPYLQRQIALVNPTVIVALGKTAALSLLKLDPATPVA 236 Query: 253 KLRGTVHRYQGLPLVVTYHPAYLLRQLGDKSKAWADLCLAMTTYADTTD 301 +LRGTVHRY +P+VVTYHPAYLLR L DKSKAWADLCLAM TYAD + Sbjct: 237 RLRGTVHRYADIPVVVTYHPAYLLRTLKDKSKAWADLCLAMQTYADRAN 285 >ref|YP_001100043.1| putative DNA polymerase-related protein, bacteriophage-type [Herminiimonas arsenicoxydans] emb|CAL61918.1| Putative phage SPO1 DNA polymerase-related protein, uracil-DNA glycosylase family [Herminiimonas arsenicoxydans] Length = 283 Score = 340 bits (872), Expect = 2e-91, Method: Compositional matrix adjust. Identities = 179/291 (61%), Positives = 201/291 (69%), Gaps = 19/291 (6%) Query: 10 ARVLEEIGVGPVWVRRHLAVETAEAEAAATPVAAAPVPAPQRAAQPAARPAPAPAPAPAQ 69 A L E+G+GP+W +R +A A AEA A A VP+ Q A A Sbjct: 8 AAFLHEMGLGPIWSQRGIAAPQAVAEAV-MDAAPAGVPSMQTTAVAVTTSA--------- 57 Query: 70 DDGLPPWLNEMSDADMAPPGFMPNDDEDDEPVIRINPA-IATMDWAKLKETVAECRQCGL 128 W A A P P E + A I MDWA+LK VA C QCGL Sbjct: 58 ------WAERTPAA--AVPLHAPVTLTASEVATSTSFADIVQMDWAQLKSVVASCTQCGL 109 Query: 129 CNGRKKTVFGVGDEKAKWLFIGEGPGRNEDMQGEPFVGPAGKLLDNMLVAMGLKRGENAY 188 C R +TVFGVGD+KA+WLF+GEGPGRNED QGEPFVGPAGKLLDNM AMGLKRGEN Y Sbjct: 110 CKSRTQTVFGVGDQKARWLFVGEGPGRNEDFQGEPFVGPAGKLLDNMFGAMGLKRGENTY 169 Query: 189 IANIVKCRPTDEAGKDRPPSAQEVASCLPYLQRQIALIQPTVLVALGKTAALSLLGLDPA 248 IANIVKCRP D DRPP+A+EVA+C+PYL+RQIALI+PTV+VALGKTAA+SLL LDPA Sbjct: 170 IANIVKCRPIDAGKHDRPPAAEEVAACIPYLERQIALIKPTVIVALGKTAAISLLKLDPA 229 Query: 249 TPVSKLRGTVHRYQGLPLVVTYHPAYLLRQLGDKSKAWADLCLAMTTYADT 299 TPV KLRGTVHRY LPL+VTYHPAYLLR L DKSKAWADLCLAM TYAD+ Sbjct: 230 TPVGKLRGTVHRYADLPLIVTYHPAYLLRNLKDKSKAWADLCLAMQTYADS 280 >ref|ZP_08273281.1| putative DNA polymerase-like protein, bacteriophage-type protein [Oxalobacteraceae bacterium IMCC9480] gb|EGF33241.1| putative DNA polymerase-like protein, bacteriophage-type protein [Oxalobacteraceae bacterium IMCC9480] Length = 289 Score = 263 bits (673), Expect = 2e-68, Method: Compositional matrix adjust. Identities = 150/288 (52%), Positives = 178/288 (61%), Gaps = 17/288 (5%) Query: 10 ARVLEEIGVGPVWVRRHLAVETAEAEAAATPVAAAPVPAPQRAAQPAARPAPAPAPAPAQ 69 AR L+ +G+GPVWV R V P+PA A PA P AP + Q Sbjct: 12 ARFLQALGIGPVWVPRQSVVSDE-----------VPLPATVAIAVPAVPPVAAPVVSK-Q 59 Query: 70 DDGLPPWLNEMSDADMAPPGFMPNDDEDDEPVIRINPAIATMDWAKLKETVAECRQCGLC 129 D W + + A + D+ AIA M W +L+ VA C +C LC Sbjct: 60 DKAASAWDDAPAVRAPAAAAPVLASPVDEGAA-----AIARMSWQELELAVASCTRCALC 114 Query: 130 NGRKKTVFGVGDEKAKWLFIGEGPGRNEDMQGEPFVGPAGKLLDNMLVAMGLKRGENAYI 189 RK+ V G GD+K WLF+GEGPG ED QGEPFVGPAGKLLDNML+A+ L RGEN Y+ Sbjct: 115 KNRKQAVLGAGDQKPGWLFVGEGPGHVEDQQGEPFVGPAGKLLDNMLLALDLPRGENNYL 174 Query: 190 ANIVKCRPTDEAGKDRPPSAQEVASCLPYLQRQIALIQPTVLVALGKTAALSLLGLDPAT 249 AN VKCRP GKDRPPSA E A+C PYL+RQIAL+QP V+VALGK AALSLLG DP Sbjct: 175 ANAVKCRPVGADGKDRPPSADESAACRPYLERQIALLQPAVIVALGKVAALSLLGGDPKI 234 Query: 250 PVSKLRGTVHRYQGLPLVVTYHPAYLLRQLGDKSKAWADLCLAMTTYA 297 V+ LR HRY +P+VVTYHPAYLLR+ DK+K+W DLCLA YA Sbjct: 235 AVAALREHTHRYGSIPVVVTYHPAYLLRKPLDKAKSWRDLCLAAQAYA 282