BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0040.p (178 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003775576.1| N-formylmethionyl-tRNA deformylase/polypepti... 290 8e-77 ref|YP_004751952.1| peptide deformylase [Collimonas fungivorans ... 283 6e-75 ref|YP_001353753.1| N-formylmethionyl-tRNA deformylase [Janthino... 268 2e-70 ref|ZP_08275758.1| Peptide deformylase [Oxalobacteraceae bacteri... 268 4e-70 ref|YP_583581.1| peptide deformylase [Cupriavidus metallidurans ... 263 9e-69 >ref|YP_003775576.1| N-formylmethionyl-tRNA deformylase/polypeptide deformylase [Herbaspirillum seropedicae SmR1] gb|ADJ63668.1| N-formylmethionyl-tRNA deformylase/polypeptide deformylase protein [Herbaspirillum seropedicae SmR1] Length = 178 Score = 290 bits (741), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 136/178 (76%), Positives = 157/178 (88%) Query: 1 MAIREILKMGDPRLLRQAEPVQQFGTPEMDTLIADMFETMRAVNGAGADMFETMRAVQLV 60 MAIREILKMGDPRLLRQA+PV +FGTPE+ L+ DMF+TMRAVNGAG + +QLV Sbjct: 1 MAIREILKMGDPRLLRQAQPVTEFGTPELARLVDDMFQTMRAVNGAGLAAPQIGVDLQLV 60 Query: 61 IFGFKKNQRYPDAPEVPETVLINPTLTPLSDEQEEGWEGCLSVPGLRGVVPRWSRLRYEG 120 IFGF +NQRYPDAP VPETVLINP LTPLS+++EEGWEGCLSVPG+RGVVPRWSRLRY+G Sbjct: 61 IFGFGQNQRYPDAPPVPETVLINPVLTPLSEQEEEGWEGCLSVPGMRGVVPRWSRLRYQG 120 Query: 121 MDEKGNRIDRTVDGFHARVVQHECDHLIGVLYPMRIKDFTRFGFTEILFPELDPNDDD 178 +D+ G IDR+V+GFHARVVQHECDHL G+LYPMRI+DF RFGFTE+LFPELDP+ DD Sbjct: 121 VDQNGEPIDRSVEGFHARVVQHECDHLQGILYPMRIRDFRRFGFTEVLFPELDPSQDD 178 >ref|YP_004751952.1| peptide deformylase [Collimonas fungivorans Ter331] gb|AEK61129.1| Peptide deformylase [Collimonas fungivorans Ter331] Length = 178 Score = 283 bits (725), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 135/178 (75%), Positives = 147/178 (82%) Query: 1 MAIREILKMGDPRLLRQAEPVQQFGTPEMDTLIADMFETMRAVNGAGADMFETMRAVQLV 60 M +REILKMGDPRLLRQAEPV FGTPE++ LIADMF+TM A NGAG + +QLV Sbjct: 1 MTVREILKMGDPRLLRQAEPVTAFGTPELEALIADMFDTMYAANGAGLAAPQIGVNLQLV 60 Query: 61 IFGFKKNQRYPDAPEVPETVLINPTLTPLSDEQEEGWEGCLSVPGLRGVVPRWSRLRYEG 120 IFGFK N RYPDAP VPETVLINP L PLSD+ E+GWEGCLSVPGLRGVVPRW+ L YEG Sbjct: 61 IFGFKNNVRYPDAPAVPETVLINPVLRPLSDDTEDGWEGCLSVPGLRGVVPRWTSLHYEG 120 Query: 121 MDEKGNRIDRTVDGFHARVVQHECDHLIGVLYPMRIKDFTRFGFTEILFPELDPNDDD 178 D+ G I R VDGFHARVVQHE DHL G+LYPMRIKDFTRFGFTE+LFPELDPN DD Sbjct: 121 FDQTGAAISRDVDGFHARVVQHETDHLNGILYPMRIKDFTRFGFTEVLFPELDPNHDD 178 >ref|YP_001353753.1| N-formylmethionyl-tRNA deformylase [Janthinobacterium sp. Marseille] gb|ABR89905.1| N-formylmethionyl-tRNA deformylase [Janthinobacterium sp. Marseille] Length = 178 Score = 268 bits (686), Expect = 2e-70, Method: Compositional matrix adjust. Identities = 126/178 (70%), Positives = 146/178 (82%) Query: 1 MAIREILKMGDPRLLRQAEPVQQFGTPEMDTLIADMFETMRAVNGAGADMFETMRAVQLV 60 M +REILKMGDPRLLR AEPV++FGTPE+D LI DMF+TM A NGAG + ++LV Sbjct: 1 MTVREILKMGDPRLLRVAEPVKEFGTPELDALIEDMFDTMHAANGAGLAAPQIGVNLRLV 60 Query: 61 IFGFKKNQRYPDAPEVPETVLINPTLTPLSDEQEEGWEGCLSVPGLRGVVPRWSRLRYEG 120 I+GFK+N RYPDAP VPETVLINP L PLS E E+GWEGCLSVPGLRGVVPR+S L Y+G Sbjct: 61 IYGFKQNTRYPDAPPVPETVLINPKLRPLSAEMEDGWEGCLSVPGLRGVVPRFSALHYDG 120 Query: 121 MDEKGNRIDRTVDGFHARVVQHECDHLIGVLYPMRIKDFTRFGFTEILFPELDPNDDD 178 D+ GN I R DGFHARVVQHECDHL G+LYPMRI D ++FG+ +ILFP+LDPNDDD Sbjct: 121 FDQYGNVISRDADGFHARVVQHECDHLDGILYPMRITDLSQFGYVDILFPDLDPNDDD 178 >ref|ZP_08275758.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480] gb|EGF30770.1| Peptide deformylase [Oxalobacteraceae bacterium IMCC9480] Length = 178 Score = 268 bits (684), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 128/178 (71%), Positives = 144/178 (80%) Query: 1 MAIREILKMGDPRLLRQAEPVQQFGTPEMDTLIADMFETMRAVNGAGADMFETMRAVQLV 60 M +REILKMGDPRLLR AEPV +F TP M LIADMFETM AVNGAG + +QLV Sbjct: 1 MTVREILKMGDPRLLRVAEPVTEFDTPAMRLLIADMFETMHAVNGAGLAAPQIGVNLQLV 60 Query: 61 IFGFKKNQRYPDAPEVPETVLINPTLTPLSDEQEEGWEGCLSVPGLRGVVPRWSRLRYEG 120 I+G + N RYP+APEVPET+LINP LTPLSDE E WEGCLSVPGLRGVVPRW L YEG Sbjct: 61 IYGSRNNVRYPEAPEVPETILINPVLTPLSDELVENWEGCLSVPGLRGVVPRWQALHYEG 120 Query: 121 MDEKGNRIDRTVDGFHARVVQHECDHLIGVLYPMRIKDFTRFGFTEILFPELDPNDDD 178 +D+ G I R VDGFHARVVQHECDHLIGVLYPMR+ DF+RFG+T +LFPELD ++DD Sbjct: 121 VDQFGAVISRDVDGFHARVVQHECDHLIGVLYPMRVTDFSRFGYTSVLFPELDGDEDD 178 >ref|YP_583581.1| peptide deformylase [Cupriavidus metallidurans CH34] gb|ABF08312.1| polypeptide or peptide deformylase [Cupriavidus metallidurans CH34] Length = 177 Score = 263 bits (671), Expect = 9e-69, Method: Compositional matrix adjust. Identities = 127/176 (72%), Positives = 144/176 (81%) Query: 3 IREILKMGDPRLLRQAEPVQQFGTPEMDTLIADMFETMRAVNGAGADMFETMRAVQLVIF 62 IR+ILKMGD RLL+QA PV QF TPE+ LI DMF+TM NGAG + +Q+VIF Sbjct: 2 IRDILKMGDARLLQQARPVTQFNTPELRLLIDDMFDTMEHANGAGLAAPQIGVDLQVVIF 61 Query: 63 GFKKNQRYPDAPEVPETVLINPTLTPLSDEQEEGWEGCLSVPGLRGVVPRWSRLRYEGMD 122 GF +N RYPDAP VP+TVLINP+L PLSDE ++GWEGCLSVPGLRGVVPR++RL+Y G D Sbjct: 62 GFDRNPRYPDAPTVPKTVLINPSLEPLSDEMDDGWEGCLSVPGLRGVVPRYTRLKYTGFD 121 Query: 123 EKGNRIDRTVDGFHARVVQHECDHLIGVLYPMRIKDFTRFGFTEILFPELDPNDDD 178 GNRI+R + FHARVVQHECDHLIGVLYPMRIKDFTRFGFTEILFPEL PN DD Sbjct: 122 MMGNRIERVAEDFHARVVQHECDHLIGVLYPMRIKDFTRFGFTEILFPELPPNYDD 177