BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0032.p (270 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001353751.1| pseudouridylate synthase [Janthinobacterium ... 443 e-122 ref|YP_001099632.1| putative pseudouridylate synthase [Herminiim... 429 e-118 ref|YP_004751983.1| putative pseudouridylate synthase [Collimona... 423 e-116 ref|YP_003775582.1| RNA pseudouridylate synthase [Herbaspirillum... 417 e-115 ref|ZP_04578206.1| pseudouridylate synthase [Oxalobacter formige... 404 e-111 >ref|YP_001353751.1| pseudouridylate synthase [Janthinobacterium sp. Marseille] gb|ABR89823.1| pseudouridylate synthase [Janthinobacterium sp. Marseille] Length = 248 Score = 443 bits (1140), Expect = e-122, Method: Compositional matrix adjust. Identities = 215/248 (86%), Positives = 231/248 (93%) Query: 23 MTEPVRLSKRMSELGLCSRREADEWIEKGWVRVDGQVVSVLGSKVLPHQRVSVERQAAAE 82 M EP+RLSKRMSELGLCSRREADEWI +GWVRVDG+VVS LGSKVLP QRV+VERQAAAE Sbjct: 1 MNEPLRLSKRMSELGLCSRREADEWIARGWVRVDGKVVSELGSKVLPTQRVTVERQAAAE 60 Query: 83 QSKRVTILINKPTGFVSGQAEDGYKPAVALVEAATRWKEDQVDTQFHPTQLRSLVPAGRL 142 QSKRVT+LINKP G+VSGQAEDGYKPAVALV A+TRW EDQ TQFHPTQLRSLVPAGRL Sbjct: 61 QSKRVTVLINKPMGYVSGQAEDGYKPAVALVNASTRWSEDQAATQFHPTQLRSLVPAGRL 120 Query: 143 DIDSVGLLVLTQDGRIAKQLIGEDTSVDKEYLVRVQYTKPGKLPDSDLKRLNHGLSLDGK 202 DIDSVGLLVLTQDGRIAK LIGEDTSV+KEYLVRVQY+KPGKLP++DLKRLNHGL LDGK Sbjct: 121 DIDSVGLLVLTQDGRIAKHLIGEDTSVEKEYLVRVQYSKPGKLPEADLKRLNHGLMLDGK 180 Query: 203 ALKPAKVRWQNEDQLSFILNEGKKRQIRRMCELVGLKVVGLKRVRIGGVKLGDLPTGEWR 262 L PAKV+WQNEDQLSFIL EGKKRQIRRMC++VGLKV+GLKRVRIG VKLGDLP G+WR Sbjct: 181 KLLPAKVKWQNEDQLSFILREGKKRQIRRMCDMVGLKVIGLKRVRIGNVKLGDLPVGQWR 240 Query: 263 YLRPDEQF 270 YLR DEQF Sbjct: 241 YLREDEQF 248 >ref|YP_001099632.1| putative pseudouridylate synthase [Herminiimonas arsenicoxydans] emb|CAL61505.1| putative ribosomal large subunit pseudouridine synthase [Herminiimonas arsenicoxydans] Length = 248 Score = 429 bits (1103), Expect = e-118, Method: Compositional matrix adjust. Identities = 210/248 (84%), Positives = 229/248 (92%) Query: 23 MTEPVRLSKRMSELGLCSRREADEWIEKGWVRVDGQVVSVLGSKVLPHQRVSVERQAAAE 82 MTEP+RLSKRMSELGLCSRREADEWI +GWVRVDG+VVS LG+K+LP QRV+VERQAAAE Sbjct: 1 MTEPLRLSKRMSELGLCSRREADEWIARGWVRVDGKVVSELGTKILPTQRVTVERQAAAE 60 Query: 83 QSKRVTILINKPTGFVSGQAEDGYKPAVALVEAATRWKEDQVDTQFHPTQLRSLVPAGRL 142 QSKRVTILINKP G+VSGQAEDGYKPAVALV+A +RWKED TQFHPTQLRSLVPAGRL Sbjct: 61 QSKRVTILINKPMGYVSGQAEDGYKPAVALVKAESRWKEDTSPTQFHPTQLRSLVPAGRL 120 Query: 143 DIDSVGLLVLTQDGRIAKQLIGEDTSVDKEYLVRVQYTKPGKLPDSDLKRLNHGLSLDGK 202 DIDSVGLLVLTQDGRIAK LIGE++SV+KEYLVRVQY KPGKLP++DL+RLNHGL LDGK Sbjct: 121 DIDSVGLLVLTQDGRIAKHLIGENSSVEKEYLVRVQYIKPGKLPEADLQRLNHGLMLDGK 180 Query: 203 ALKPAKVRWQNEDQLSFILNEGKKRQIRRMCELVGLKVVGLKRVRIGGVKLGDLPTGEWR 262 L PA+V+WQNEDQLSFIL EGKKRQIRRMC++VGLKVVGLKRVRIG VKLGDLP GEWR Sbjct: 181 KLLPAQVKWQNEDQLSFILREGKKRQIRRMCDIVGLKVVGLKRVRIGRVKLGDLPVGEWR 240 Query: 263 YLRPDEQF 270 YL EQF Sbjct: 241 YLAEGEQF 248 >ref|YP_004751983.1| putative pseudouridylate synthase [Collimonas fungivorans Ter331] gb|AEK61160.1| putative pseudouridylate synthase [Collimonas fungivorans Ter331] Length = 251 Score = 423 bits (1087), Expect = e-116, Method: Compositional matrix adjust. Identities = 206/251 (82%), Positives = 229/251 (91%) Query: 20 LSIMTEPVRLSKRMSELGLCSRREADEWIEKGWVRVDGQVVSVLGSKVLPHQRVSVERQA 79 + +MTEP+RLSKRMSELGLCSRREADEWI +GWVRVDG VVS LGSKVLP QR+SVERQA Sbjct: 1 MHLMTEPLRLSKRMSELGLCSRREADEWIARGWVRVDGVVVSELGSKVLPSQRISVERQA 60 Query: 80 AAEQSKRVTILINKPTGFVSGQAEDGYKPAVALVEAATRWKEDQVDTQFHPTQLRSLVPA 139 AAEQSKRVTILINKP G+VSGQAEDGY+PAVAL++ A RW ED+ T FHPTQLRSLVPA Sbjct: 61 AAEQSKRVTILINKPVGYVSGQAEDGYQPAVALIKEANRWSEDRSPTLFHPTQLRSLVPA 120 Query: 140 GRLDIDSVGLLVLTQDGRIAKQLIGEDTSVDKEYLVRVQYTKPGKLPDSDLKRLNHGLSL 199 GRLDIDSVGLLVLTQDGRIAK LIGE+TSVDKEYLVRV+YTK KLPD++L+RLNHGL+L Sbjct: 121 GRLDIDSVGLLVLTQDGRIAKHLIGEETSVDKEYLVRVRYTKGDKLPDAELRRLNHGLTL 180 Query: 200 DGKALKPAKVRWQNEDQLSFILNEGKKRQIRRMCELVGLKVVGLKRVRIGGVKLGDLPTG 259 DGK LKPA V+WQN+DQLSF L EGKKRQIRRMC++VGLKV+GLKRVRIGGVKLG+LP G Sbjct: 181 DGKKLKPAIVKWQNDDQLSFTLREGKKRQIRRMCDMVGLKVLGLKRVRIGGVKLGNLPEG 240 Query: 260 EWRYLRPDEQF 270 +WRYL DEQF Sbjct: 241 QWRYLGADEQF 251 >ref|YP_003775582.1| RNA pseudouridylate synthase [Herbaspirillum seropedicae SmR1] gb|ADJ63674.1| RNA pseudouridylate synthase protein [Herbaspirillum seropedicae SmR1] Length = 248 Score = 417 bits (1073), Expect = e-115, Method: Compositional matrix adjust. Identities = 209/248 (84%), Positives = 232/248 (93%) Query: 23 MTEPVRLSKRMSELGLCSRREADEWIEKGWVRVDGQVVSVLGSKVLPHQRVSVERQAAAE 82 MTEPVRLSKRMSELGLCSRREADEWIEKGWVRVDG VVSVLGSKVLPHQ+V+VERQA+AE Sbjct: 1 MTEPVRLSKRMSELGLCSRREADEWIEKGWVRVDGVVVSVLGSKVLPHQKVTVERQASAE 60 Query: 83 QSKRVTILINKPTGFVSGQAEDGYKPAVALVEAATRWKEDQVDTQFHPTQLRSLVPAGRL 142 Q++RVTIL+NKP G+VSGQAEDGYKPAV LV +RW EDQ + +FHP QL+SLVPAGRL Sbjct: 61 QAQRVTILLNKPMGYVSGQAEDGYKPAVVLVNEQSRWAEDQTEMRFHPRQLKSLVPAGRL 120 Query: 143 DIDSVGLLVLTQDGRIAKQLIGEDTSVDKEYLVRVQYTKPGKLPDSDLKRLNHGLSLDGK 202 DIDSVGLLVLTQDGRIAKQLIGED++VDKEYLVRVQYT+PGKLP+SDLKRLNHGL +DGK Sbjct: 121 DIDSVGLLVLTQDGRIAKQLIGEDSAVDKEYLVRVQYTRPGKLPESDLKRLNHGLIMDGK 180 Query: 203 ALKPAKVRWQNEDQLSFILNEGKKRQIRRMCELVGLKVVGLKRVRIGGVKLGDLPTGEWR 262 L+PAKV WQNEDQL F L EGKKRQIRRMC++VGLKV+GLKRVRIGGVKLG+LPTG+WR Sbjct: 181 PLRPAKVVWQNEDQLRFTLREGKKRQIRRMCDMVGLKVIGLKRVRIGGVKLGELPTGQWR 240 Query: 263 YLRPDEQF 270 YLRPDE+F Sbjct: 241 YLRPDEKF 248 >ref|ZP_04578206.1| pseudouridylate synthase [Oxalobacter formigenes OXCC13] gb|EEO29179.1| pseudouridylate synthase [Oxalobacter formigenes OXCC13] Length = 248 Score = 404 bits (1039), Expect = e-111, Method: Compositional matrix adjust. Identities = 191/248 (77%), Positives = 222/248 (89%) Query: 23 MTEPVRLSKRMSELGLCSRREADEWIEKGWVRVDGQVVSVLGSKVLPHQRVSVERQAAAE 82 M+EPVRLSKRMSELG+ SRREADEWIEKGWV+VDG+VVS LGSKVLPHQ++++E+QA+ E Sbjct: 1 MSEPVRLSKRMSELGISSRREADEWIEKGWVKVDGKVVSQLGSKVLPHQKITIEKQASQE 60 Query: 83 QSKRVTILINKPTGFVSGQAEDGYKPAVALVEAATRWKEDQVDTQFHPTQLRSLVPAGRL 142 QS+RVTILINKP G+VSGQAEDGYKPAVAL+ T WK+D +F P+QLRSLVPAGRL Sbjct: 61 QSRRVTILINKPMGYVSGQAEDGYKPAVALISEDTHWKDDPSKEKFRPSQLRSLVPAGRL 120 Query: 143 DIDSVGLLVLTQDGRIAKQLIGEDTSVDKEYLVRVQYTKPGKLPDSDLKRLNHGLSLDGK 202 DIDSVGLLVLTQDGRIAK LIGE++ DKEYLVRV+YT+PG+LPDS+L L HGL LDGK Sbjct: 121 DIDSVGLLVLTQDGRIAKHLIGENSPTDKEYLVRVKYTRPGRLPDSELNMLRHGLKLDGK 180 Query: 203 ALKPAKVRWQNEDQLSFILNEGKKRQIRRMCELVGLKVVGLKRVRIGGVKLGDLPTGEWR 262 AL PAKV WQN+DQL F+L EGKKRQIRRMCE VGL+V+GLKR+RIG V+LGDLPTG+WR Sbjct: 181 ALLPAKVEWQNDDQLRFVLREGKKRQIRRMCEAVGLRVIGLKRIRIGNVRLGDLPTGQWR 240 Query: 263 YLRPDEQF 270 YLRP+E+F Sbjct: 241 YLRPEEKF 248