BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0015.0028.p         (224 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003775585.1| 30S ribosomal protein S2 [Herbaspirillum ser...   417   e-115
sp|A6SZQ1.2|RS2_JANMA RecName: Full=30S ribosomal protein S2          408   e-112
ref|YP_001353748.1| small subunit ribosomal protein S2 [Janthino...   407   e-112
ref|YP_004751986.1| 30S ribosomal protein S2p (SAe) [Collimonas ...   404   e-111
ref|YP_001099635.1| 30S ribosomal protein S2 [Herminiimonas arse...   398   e-109

>ref|YP_003775585.1| 30S ribosomal protein S2 [Herbaspirillum seropedicae SmR1]
 emb|CAM32576.1| 30S ribosomal subunit protein S2 [Herbaspirillum seropedicae]
 gb|ADJ63677.1| 30S ribosomal subunit protein S2 [Herbaspirillum seropedicae SmR1]
          Length = 246

 Score =  417 bits (1071), Expect = e-115,   Method: Compositional matrix adjust.
 Identities = 207/224 (92%), Positives = 216/224 (96%), Gaps = 3/224 (1%)

Query: 1   MAPFIFGHRNKIHIVNLEKTLGMYQEALKYVRQLSSNRGTILFVGTKRQARDTIAAEAQR 60
           MAPFIFGHRNKIHIVNLEKTLGMYQEA KYVRQLS+NRGTILFVGTKRQAR+ +AAEAQR
Sbjct: 26  MAPFIFGHRNKIHIVNLEKTLGMYQEAQKYVRQLSANRGTILFVGTKRQAREILAAEAQR 85

Query: 61  AGVPYVDQRWLGGMLTNFKTIKTSIKRLKDMEASIADGSNEKLSKKEALLFSREQEKLQK 120
           AGVPYVDQRWLGGMLTNFKTIKTSIKRLKDMEA++ DGS EKLSKKEALLFSREQEKLQK
Sbjct: 86  AGVPYVDQRWLGGMLTNFKTIKTSIKRLKDMEAAVEDGSVEKLSKKEALLFSREQEKLQK 145

Query: 121 AIGGIKDMGGIPDAIFVIDVGYHKGAITEAAKLGIPVIGVVDTNHSPEGVTYIIPGNDDS 180
           AIGGIKDMGGIPDAIFVIDVGYHKGAITEAAKLGIPVIGVVDTNHSPEGVTY+IPGNDDS
Sbjct: 146 AIGGIKDMGGIPDAIFVIDVGYHKGAITEAAKLGIPVIGVVDTNHSPEGVTYVIPGNDDS 205

Query: 181 AKAIALYARGVADAILEGRENAVNEVVEAVKNGGDEFVEVNEQA 224
           AKAIALYARG+ADA+LEGR NAVN+VVEAVK  GDEFVEV EQA
Sbjct: 206 AKAIALYARGMADAVLEGRANAVNDVVEAVK--GDEFVEV-EQA 246


>sp|A6SZQ1.2|RS2_JANMA RecName: Full=30S ribosomal protein S2
          Length = 248

 Score =  408 bits (1048), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/224 (86%), Positives = 216/224 (96%), Gaps = 1/224 (0%)

Query: 1   MAPFIFGHRNKIHIVNLEKTLGMYQEALKYVRQLSSNRGTILFVGTKRQARDTIAAEAQR 60
           MAPFIFGHRN+IHIVNLEKT+GMYQEA+KY+RQLSSNRGT+LFVGTKRQAR+TIAAEAQR
Sbjct: 26  MAPFIFGHRNRIHIVNLEKTMGMYQEAMKYIRQLSSNRGTVLFVGTKRQARETIAAEAQR 85

Query: 61  AGVPYVDQRWLGGMLTNFKTIKTSIKRLKDMEASIADGSNEKLSKKEALLFSREQEKLQK 120
           AG+PYVDQRWLGGMLTNFKTIKTSIKRLK+MEASI DGS +KLSKKEAL+F RE+ KL+K
Sbjct: 86  AGMPYVDQRWLGGMLTNFKTIKTSIKRLKEMEASIEDGSVQKLSKKEALMFEREKIKLEK 145

Query: 121 AIGGIKDMGGIPDAIFVIDVGYHKGAITEAAKLGIPVIGVVDTNHSPEGVTYIIPGNDDS 180
           +IGGIKDMGGIPDAIFV+DVGYHKGAITEAAKLGIPVIGVVDTNHSPEGVTY+IPGNDDS
Sbjct: 146 SIGGIKDMGGIPDAIFVVDVGYHKGAITEAAKLGIPVIGVVDTNHSPEGVTYVIPGNDDS 205

Query: 181 AKAIALYARGVADAILEGRENAVNEVVEAVKNGGDEFVEVNEQA 224
           +KAI LYARGVADAILEGR NA N++VE++K GGD+FVEV+EQA
Sbjct: 206 SKAIMLYARGVADAILEGRANATNDLVESIK-GGDDFVEVSEQA 248


>ref|YP_001353748.1| small subunit ribosomal protein S2 [Janthinobacterium sp.
           Marseille]
 gb|ABR89244.1| small subunit ribosomal protein S2 [Janthinobacterium sp.
           Marseille]
          Length = 264

 Score =  407 bits (1046), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 194/224 (86%), Positives = 216/224 (96%), Gaps = 1/224 (0%)

Query: 1   MAPFIFGHRNKIHIVNLEKTLGMYQEALKYVRQLSSNRGTILFVGTKRQARDTIAAEAQR 60
           MAPFIFGHRN+IHIVNLEKT+GMYQEA+KY+RQLSSNRGT+LFVGTKRQAR+TIAAEAQR
Sbjct: 42  MAPFIFGHRNRIHIVNLEKTMGMYQEAMKYIRQLSSNRGTVLFVGTKRQARETIAAEAQR 101

Query: 61  AGVPYVDQRWLGGMLTNFKTIKTSIKRLKDMEASIADGSNEKLSKKEALLFSREQEKLQK 120
           AG+PYVDQRWLGGMLTNFKTIKTSIKRLK+MEASI DGS +KLSKKEAL+F RE+ KL+K
Sbjct: 102 AGMPYVDQRWLGGMLTNFKTIKTSIKRLKEMEASIEDGSVQKLSKKEALMFEREKIKLEK 161

Query: 121 AIGGIKDMGGIPDAIFVIDVGYHKGAITEAAKLGIPVIGVVDTNHSPEGVTYIIPGNDDS 180
           +IGGIKDMGGIPDAIFV+DVGYHKGAITEAAKLGIPVIGVVDTNHSPEGVTY+IPGNDDS
Sbjct: 162 SIGGIKDMGGIPDAIFVVDVGYHKGAITEAAKLGIPVIGVVDTNHSPEGVTYVIPGNDDS 221

Query: 181 AKAIALYARGVADAILEGRENAVNEVVEAVKNGGDEFVEVNEQA 224
           +KAI LYARGVADAILEGR NA N++VE++K GGD+FVEV+EQA
Sbjct: 222 SKAIMLYARGVADAILEGRANATNDLVESIK-GGDDFVEVSEQA 264


>ref|YP_004751986.1| 30S ribosomal protein S2p (SAe) [Collimonas fungivorans Ter331]
 gb|AEK61163.1| SSU ribosomal protein S2p (SAe) [Collimonas fungivorans Ter331]
          Length = 250

 Score =  404 bits (1037), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 197/225 (87%), Positives = 211/225 (93%), Gaps = 1/225 (0%)

Query: 1   MAPFIFGHRNKIHIVNLEKTLGMYQEALKYVRQLSSNRGTILFVGTKRQARDTIAAEAQR 60
           MAPFIFGHRNKIHIVNLEKTLGMYQEA+KY+RQLSSNRG ILFVGTKRQAR+ +AAEA R
Sbjct: 26  MAPFIFGHRNKIHIVNLEKTLGMYQEAMKYIRQLSSNRGNILFVGTKRQAREIVAAEAAR 85

Query: 61  AGVPYVDQRWLGGMLTNFKTIKTSIKRLKDMEASIADGSNEKLSKKEALLFSREQEKLQK 120
           +G P+VDQRWLGGMLTNFKTIKTSIKRLK+MEASI DGS EKLSKKE L+F RE  KLQK
Sbjct: 86  SGSPFVDQRWLGGMLTNFKTIKTSIKRLKEMEASIEDGSVEKLSKKEGLMFQRELIKLQK 145

Query: 121 AIGGIKDMGGIPDAIFVIDVGYHKGAITEAAKLGIPVIGVVDTNHSPEGVTYIIPGNDDS 180
           AIGGIKDMGGIPDAIFVIDVGYHKGAITEAAKLGIPVIGVVDTNHSP+GVTY+IPGNDDS
Sbjct: 146 AIGGIKDMGGIPDAIFVIDVGYHKGAITEAAKLGIPVIGVVDTNHSPDGVTYVIPGNDDS 205

Query: 181 AKAIALYARGVADAILEGRENAVNEVVEAVKN-GGDEFVEVNEQA 224
           +KAIALYARGVADAILEGR NAVN+VVEA+K   GDEFVEVN+QA
Sbjct: 206 SKAIALYARGVADAILEGRANAVNDVVEAIKGAAGDEFVEVNDQA 250


>ref|YP_001099635.1| 30S ribosomal protein S2 [Herminiimonas arsenicoxydans]
 sp|A4G4S1.1|RS2_HERAR RecName: Full=30S ribosomal protein S2
 emb|CAL61508.1| 30S ribosomal subunit protein S2 [Herminiimonas arsenicoxydans]
          Length = 248

 Score =  398 bits (1023), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 190/224 (84%), Positives = 213/224 (95%), Gaps = 1/224 (0%)

Query: 1   MAPFIFGHRNKIHIVNLEKTLGMYQEALKYVRQLSSNRGTILFVGTKRQARDTIAAEAQR 60
           MAP+IFGHRN+IHIVNLEKTLGMYQEA+KY++QLSSNRGT+LFVGTKRQAR+TIAAEA R
Sbjct: 26  MAPYIFGHRNRIHIVNLEKTLGMYQEAMKYIKQLSSNRGTVLFVGTKRQARETIAAEAAR 85

Query: 61  AGVPYVDQRWLGGMLTNFKTIKTSIKRLKDMEASIADGSNEKLSKKEALLFSREQEKLQK 120
           AG+PYVDQRWLGGMLTNFKTIKTSIKRLK++EA + DGS EKLSKKEAL+F RE+ KL+K
Sbjct: 86  AGMPYVDQRWLGGMLTNFKTIKTSIKRLKELEALVEDGSMEKLSKKEALMFEREKIKLEK 145

Query: 121 AIGGIKDMGGIPDAIFVIDVGYHKGAITEAAKLGIPVIGVVDTNHSPEGVTYIIPGNDDS 180
           +IGGIKDMGGIPDAIFV+DVGYHKGAITEAAKLGIPVIGVVDTNHSPEGV YIIPGNDDS
Sbjct: 146 SIGGIKDMGGIPDAIFVVDVGYHKGAITEAAKLGIPVIGVVDTNHSPEGVAYIIPGNDDS 205

Query: 181 AKAIALYARGVADAILEGRENAVNEVVEAVKNGGDEFVEVNEQA 224
           +KAI LYARGVADAILEGR +A N++VE++K GGD+FVEVNEQA
Sbjct: 206 SKAIMLYARGVADAILEGRASATNDLVESIK-GGDDFVEVNEQA 248