BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0023.p (342 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776004.1| DNA polymerase III subunit delta [Herbaspiri... 506 e-141 ref|YP_004752475.1| DNA polymerase III subunit delta' [Collimona... 502 e-140 ref|YP_001353675.1| DNA polymerase III subunit delta' [Janthinob... 491 e-137 ref|YP_001099696.1| DNA polymerase III subunit delta' [Herminiim... 476 e-132 ref|ZP_08275258.1| DNA polymerase III, delta prime subunit [Oxal... 424 e-116 >ref|YP_003776004.1| DNA polymerase III subunit delta [Herbaspirillum seropedicae SmR1] gb|ADJ64096.1| DNA polymerase III delta subunit protein [Herbaspirillum seropedicae SmR1] Length = 345 Score = 506 bits (1303), Expect = e-141, Method: Compositional matrix adjust. Identities = 251/340 (73%), Positives = 285/340 (83%), Gaps = 1/340 (0%) Query: 2 SNTVFPWLEDSWLQLQQLRARLPHAILFYGPEGIGKTDFVESFAQSLLCEDVQPDGHACG 61 S+ + PW +SW QLQQLR RLPHA+LFYG G GKT FVE+FA+SLLCE P+ HACG Sbjct: 6 SDVLLPWQGESWRQLQQLRERLPHALLFYGAAGTGKTQFVEAFAKSLLCESPTPEAHACG 65 Query: 62 ACASCGWFSQYNHPDYRRVRPEILDGEDGGDDGDGEEKKTAKASKTPSKEIKIDQIRALA 121 CASC WFSQ NHPDYRRVRPE+LD E DD GEEKKTAKASK PSK+IKIDQIRALA Sbjct: 66 VCASCNWFSQSNHPDYRRVRPEVLDDETA-DDEAGEEKKTAKASKAPSKDIKIDQIRALA 124 Query: 122 DFMNVSTHRSGMRVVVLYPAEALNTPAANSLLKTLEEPPPNTMFLLVSNRLDRLLPTILS 181 DFMNVSTHRSG+RVV+LYPAEALNT AAN+LLKTLEEPPP TMFLL+SNRLDRLLPTILS Sbjct: 125 DFMNVSTHRSGLRVVMLYPAEALNTAAANALLKTLEEPPPGTMFLLLSNRLDRLLPTILS 184 Query: 182 RCRKFALALPSHDDGLAWLKQQNVKDADVWLSEQGGAPLAALNASQGDGREVMDEFLRSL 241 RCRKFAL+ P H + LAWLKQQ VKDAD WL+EQGGAPLAAL A+QG+GRE +DE LR L Sbjct: 185 RCRKFALSAPGHGEALAWLKQQGVKDADAWLAEQGGAPLAALEAAQGEGREALDELLRHL 244 Query: 242 CHPGIDVALKTAERLQKTPVADLVGWQQRWLYDLFALKSGGPIRYYPRYSKELGALSGRI 301 PG+D AL+ A++LQKTP ADLVGW QRWLYDL +LKS G +RYYPRY KELG L+ R+ Sbjct: 245 AQPGVDGALRAADKLQKTPAADLVGWVQRWLYDLLSLKSAGVVRYYPRYGKELGRLAERV 304 Query: 302 DTVTIATALKAANDRRAIADHPLSARLFIEEMLIEYSSLF 341 D + ++ AL+ DRRAIADHPLSA+LFIEEMLI+Y+ LF Sbjct: 305 DALALSRALRGMGDRRAIADHPLSAKLFIEEMLIDYAGLF 344 >ref|YP_004752475.1| DNA polymerase III subunit delta' [Collimonas fungivorans Ter331] gb|AEK61652.1| DNA polymerase III, delta prime subunit [Collimonas fungivorans Ter331] Length = 348 Score = 502 bits (1293), Expect = e-140, Method: Compositional matrix adjust. Identities = 248/348 (71%), Positives = 286/348 (82%), Gaps = 6/348 (1%) Query: 1 MSNTVFPWLEDSWLQLQQLRARLPHAILFYGPEGIGKTDFVESFAQSLLCEDVQPDGHAC 60 MSN++FPW + W QLQQ+RARLPHAILF+G EGIGKT F E FAQSLLCE Q DGHAC Sbjct: 1 MSNSLFPWQDGVWQQLQQMRARLPHAILFHGAEGIGKTVFAEQFAQSLLCEQPQADGHAC 60 Query: 61 GACASCGWFSQYNHPDYRRVRPEILDGED-----GGDDGD-GEEKKTAKASKTPSKEIKI 114 G C SCGWF QYNHPDYRRVRPEILDGED G +DGD G K AK++K PSKEIKI Sbjct: 61 GVCGSCGWFMQYNHPDYRRVRPEILDGEDAAEGDGAEDGDKGSTKSAAKSAKAPSKEIKI 120 Query: 115 DQIRALADFMNVSTHRSGMRVVVLYPAEALNTPAANSLLKTLEEPPPNTMFLLVSNRLDR 174 DQIR L+ FMN+STHR G RVV+LYPAEALNT AAN+LLKTLEEPPPNT+FLL SN LDR Sbjct: 121 DQIRVLSGFMNISTHRQGQRVVLLYPAEALNTAAANALLKTLEEPPPNTVFLLSSNSLDR 180 Query: 175 LLPTILSRCRKFALALPSHDDGLAWLKQQNVKDADVWLSEQGGAPLAALNASQGDGREVM 234 LLPTILSRCRKFA+ LPSH +AWL+QQ VKDADVWL+EQGGAPL A SQ +GRE++ Sbjct: 181 LLPTILSRCRKFAMPLPSHQQAMAWLRQQEVKDADVWLAEQGGAPLTAYAQSQSEGRELI 240 Query: 235 DEFLRSLCHPGIDVALKTAERLQKTPVADLVGWQQRWLYDLFALKSGGPIRYYPRYSKEL 294 DEFL+ L PGID ALK AE LQKTPVA+LVGWQQRWLYDLF+ K G IRYYPRY K L Sbjct: 241 DEFLQHLTKPGIDGALKCAEHLQKTPVAELVGWQQRWLYDLFSFKLSGTIRYYPRYEKAL 300 Query: 295 GALSGRIDTVTIATALKAANDRRAIADHPLSARLFIEEMLIEYSSLFA 342 L+ +++T + ALK++N+RRA+A+HPLSARLFIEEML++Y+++FA Sbjct: 301 AGLAAKVETGALLRALKSSNERRAVAEHPLSARLFIEEMLLDYAAMFA 348 >ref|YP_001353675.1| DNA polymerase III subunit delta' [Janthinobacterium sp. Marseille] gb|ABR88858.1| DNA polymerase III delta' subunit [Janthinobacterium sp. Marseille] Length = 344 Score = 491 bits (1264), Expect = e-137, Method: Compositional matrix adjust. Identities = 241/344 (70%), Positives = 279/344 (81%), Gaps = 2/344 (0%) Query: 1 MSNTVFPWLEDSWLQLQQLRARLPHAILFYGPEGIGKTDFVESFAQSLLCEDVQPDGHAC 60 MS T++PW + SW QLQQLR RLPHAILF+G EGIGKT F E+FAQSLLCE DGHAC Sbjct: 1 MSTTLYPWQQASWQQLQQLRERLPHAILFHGAEGIGKTAFAEAFAQSLLCETPAADGHAC 60 Query: 61 GACASCGWFSQYNHPDYRRVRPEILDGEDG--GDDGDGEEKKTAKASKTPSKEIKIDQIR 118 G+C +CGWF+QY+HPDYRRVRPEILD D G+D + + K AK +K PSKEIKIDQIR Sbjct: 61 GSCIACGWFTQYSHPDYRRVRPEILDDGDSAEGEDAEAADTKKAKTTKAPSKEIKIDQIR 120 Query: 119 ALADFMNVSTHRSGMRVVVLYPAEALNTPAANSLLKTLEEPPPNTMFLLVSNRLDRLLPT 178 AL DFMN+STHRSGMRVVVLYPAE LNT AANSLLK LEEPPP TMFLLVSN LDRLLPT Sbjct: 121 ALGDFMNISTHRSGMRVVVLYPAEVLNTAAANSLLKMLEEPPPQTMFLLVSNSLDRLLPT 180 Query: 179 ILSRCRKFALALPSHDDGLAWLKQQNVKDADVWLSEQGGAPLAALNASQGDGREVMDEFL 238 ILSRCRKFALALP D+ L WLK Q V +AD WL+EQGGAPLAA +ASQ RE MD+FL Sbjct: 181 ILSRCRKFALALPGRDEALQWLKSQQVSEADGWLAEQGGAPLAAFDASQAGMRETMDDFL 240 Query: 239 RSLCHPGIDVALKTAERLQKTPVADLVGWQQRWLYDLFALKSGGPIRYYPRYSKELGALS 298 R L PG+D ALK A+RLQKTPV +LV W QRWLYD+ ++K G IRYYPRY KELGAL+ Sbjct: 241 RQLAQPGVDGALKAADRLQKTPVPELVAWLQRWLYDVLSVKLSGTIRYYPRYKKELGALA 300 Query: 299 GRIDTVTIATALKAANDRRAIADHPLSARLFIEEMLIEYSSLFA 342 R++T + +KA NDRRAIA+HPL+ +LFIE+ML+EYS++F+ Sbjct: 301 QRVETAALLQEIKAVNDRRAIAEHPLAPKLFIEDMLLEYSTIFS 344 >ref|YP_001099696.1| DNA polymerase III subunit delta' [Herminiimonas arsenicoxydans] emb|CAL61569.1| DNA polymerase III, delta prime subunit [Herminiimonas arsenicoxydans] Length = 343 Score = 476 bits (1226), Expect = e-132, Method: Compositional matrix adjust. Identities = 232/342 (67%), Positives = 275/342 (80%), Gaps = 2/342 (0%) Query: 3 NTVFPWLEDSWLQLQQLRARLPHAILFYGPEGIGKTDFVESFAQSLLCEDVQPDGHACGA 62 NT++PW SW Q Q+LR RLPHAILF+GPEGIGKT F E+ AQSLLCE DGHACG Sbjct: 2 NTLYPWQHASWQQWQKLRERLPHAILFHGPEGIGKTAFAEACAQSLLCETPNTDGHACGT 61 Query: 63 CASCGWFSQYNHPDYRRVRPEILD--GEDGGDDGDGEEKKTAKASKTPSKEIKIDQIRAL 120 CA+CGWF QY+HPDYRRVRPEILD G++ + + K +K++K PSKEIKIDQIRAL Sbjct: 62 CAACGWFGQYSHPDYRRVRPEILDDGESAEGEEAEAGDTKKSKSTKAPSKEIKIDQIRAL 121 Query: 121 ADFMNVSTHRSGMRVVVLYPAEALNTPAANSLLKTLEEPPPNTMFLLVSNRLDRLLPTIL 180 +DFMN+STHRSGMRVV LYPAEALNT AANSLLK LEEPPPNTMFLL +N +DRLLPTIL Sbjct: 122 SDFMNISTHRSGMRVVTLYPAEALNTAAANSLLKMLEEPPPNTMFLLATNSIDRLLPTIL 181 Query: 181 SRCRKFALALPSHDDGLAWLKQQNVKDADVWLSEQGGAPLAALNASQGDGREVMDEFLRS 240 SRCRKFALA+P ++ L WL+ Q VKDAD WL+EQGGAPLAAL +SQ RE +DEFL+ Sbjct: 182 SRCRKFALAMPGAEETLQWLQAQQVKDADSWLAEQGGAPLAALASSQAGARETLDEFLQQ 241 Query: 241 LCHPGIDVALKTAERLQKTPVADLVGWQQRWLYDLFALKSGGPIRYYPRYSKELGALSGR 300 L PG+D ALKTAERLQKTPV +LV W QRWLYD+ ++K G IRYYPR+ KEL AL+ R Sbjct: 242 LAQPGVDAALKTAERLQKTPVTELVAWLQRWLYDVLSVKLSGTIRYYPRHQKELAALAAR 301 Query: 301 IDTVTIATALKAANDRRAIADHPLSARLFIEEMLIEYSSLFA 342 D + A+K N+RRAIADHPL+ +LFIE+ML++YS+LF+ Sbjct: 302 ADAGALLQAIKMLNERRAIADHPLAPKLFIEDMLLDYSTLFS 343 >ref|ZP_08275258.1| DNA polymerase III, delta prime subunit [Oxalobacteraceae bacterium IMCC9480] gb|EGF31264.1| DNA polymerase III, delta prime subunit [Oxalobacteraceae bacterium IMCC9480] Length = 346 Score = 424 bits (1090), Expect = e-116, Method: Compositional matrix adjust. Identities = 215/346 (62%), Positives = 261/346 (75%), Gaps = 4/346 (1%) Query: 1 MSNTVFPWLEDSWLQLQQLRARLPHAILFYGPEGIGKTDFVESFAQSLLCEDVQPDGHAC 60 M+ T++PW + +W QL +RARLPHAIL +G GIGKTDF E+FA SLLCE DG AC Sbjct: 1 MAVTIYPWQQQAWQQLHAMRARLPHAILLHGNPGIGKTDFAEAFAASLLCEQPLDDGRAC 60 Query: 61 GACASCGWFSQYNHPDYRRVRPEILDGEDGGDDGDGEEKK----TAKASKTPSKEIKIDQ 116 G C SCGWF QY HPDYRRVRPE+LDG D + D + TAKASK PSKEI+IDQ Sbjct: 61 GICLSCGWFGQYAHPDYRRVRPEVLDGADAANSADDSDAGDDKKTAKASKVPSKEIRIDQ 120 Query: 117 IRALADFMNVSTHRSGMRVVVLYPAEALNTPAANSLLKTLEEPPPNTMFLLVSNRLDRLL 176 IRALADFMN+STHR+G RVV+LYPAEALNT +AN+LLK+LEEPPP+T+FL+VSN LDRLL Sbjct: 121 IRALADFMNISTHRNGKRVVLLYPAEALNTISANALLKSLEEPPPDTVFLMVSNSLDRLL 180 Query: 177 PTILSRCRKFALALPSHDDGLAWLKQQNVKDADVWLSEQGGAPLAALNASQGDGREVMDE 236 PTILSRCRK AL LP+ LAWL+QQ V+DAD+WL+EQGGAPLAAL +Q E DE Sbjct: 181 PTILSRCRKLALPLPTTQVALAWLEQQQVRDADMWLAEQGGAPLAALALAQAGSHEAQDE 240 Query: 237 FLRSLCHPGIDVALKTAERLQKTPVADLVGWQQRWLYDLFALKSGGPIRYYPRYSKELGA 296 L L P ++ +LKTA++LQK V DLV QRWL+DL ++K G +RYYPR EL A Sbjct: 241 LLAMLARPSVEASLKTADKLQKAVVLDLVVCLQRWLHDLLSVKLSGKLRYYPRKQSELTA 300 Query: 297 LSGRIDTVTIATALKAANDRRAIADHPLSARLFIEEMLIEYSSLFA 342 L+ R+ + A+ A +RRAIA HPL+ARLFIE+ML++YS LF+ Sbjct: 301 LAARVALPALMKAVDQARERRAIAQHPLAARLFIEDMLLDYSHLFS 346