BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0020.p (459 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776002.1| transmembrane sensor histidine kinase transc... 348 1e-93 ref|YP_003753948.1| sensor histidine kinase [Ralstonia solanacea... 322 1e-85 ref|YP_003747160.1| sensor histidine kinase [Ralstonia solanacea... 321 2e-85 ref|YP_002983325.1| histidine kinase [Ralstonia pickettii 12D] >... 320 4e-85 ref|ZP_00944228.1| Sensory transduction protein kinase [Ralstoni... 320 5e-85 >ref|YP_003776002.1| transmembrane sensor histidine kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ64094.1| transmembrane sensor histidine kinase transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 443 Score = 348 bits (892), Expect = 1e-93, Method: Compositional matrix adjust. Identities = 228/444 (51%), Positives = 292/444 (65%), Gaps = 29/444 (6%) Query: 11 SQHQLLLRLFWMRCVTTLAQGLLVASAIYGMGLSLPLAPLCTVLGLMLAFNGLTWLRMRL 70 +QH LL RLFW+R + L++A A + ++LP+ L ++GL NG TWLR+R Sbjct: 16 TQHVLLSRLFWLRWAMVAGELLVLAGAHGWLHIALPVPQLLALIGLQALLNGATWLRLRW 75 Query: 71 PQPVREPELFFQLCIDVSALSALLYFTGGATNPFVSFYLPALAVAAAVLPSAYAFGLALY 130 +P + ELF QL +D++ L+ALLYF+GG+TNPFVSFYLPALA AA L YA LAL Sbjct: 76 TRPAEQRELFLQLLLDLAVLTALLYFSGGSTNPFVSFYLPALAAGAASLAWPYALLLALC 135 Query: 131 SLACYSALTYLYQPLHIHDHDQATAYHLAGMWVNFVMSAALITWFVTRMSATVRSRDAQL 190 +L YS L Y+Y+PLHIHD QA AYHLAGMW+NF +SA LITWFV+R++A VRSR+ +L Sbjct: 136 ALGAYSGLVYVYEPLHIHDQGQAMAYHLAGMWINFSISALLITWFVSRIAAAVRSRETEL 195 Query: 191 AQAREQQLQDERIVALGTQAASAAHEMSTPLATVAVIAGELRIEAGRNNALTMYRDDLAV 250 A+ARE+QLQ +RI+ALGTQAA AAH ++TPL+TVAVIAGELR + AL Y ++L V Sbjct: 196 ARARERQLQSQRILALGTQAAGAAHALNTPLSTVAVIAGELRRDMATQPALAAYDEELRV 255 Query: 251 VEEQIAVCKTALD--RMGMDVQVRQTDAVAPVRLSDWLRHFVDAWRLRHPAISIRLTLPQ 308 VEEQIAVCK AL+ R D Q R D+ AP+ + WL ++ WRLRHPA+ + + Q Sbjct: 256 VEEQIAVCKAALESMRQDADAQTRNEDS-API--TPWLTTLLEGWRLRHPAVLLSAEVHQ 312 Query: 309 GAPDLLDMAPARDQQLIGQIVQTLLDNAAQAVAE---NGKVDVVLSLKKDTVASAVMNSA 365 AR + L QI+ TLLDNAA AV E G+V + + + +A Sbjct: 313 PG-----WVAARLEDL-SQILLTLLDNAAHAVRERGSEGRVSIRMRAADEPAGRPAQKAA 366 Query: 366 IIRVADDGPGIAPELLKRLGYEPVRSSTGGKGIGLMLAFATARQMGGKLTLAAAAGTSAG 425 II +AD+G GIAPELL+RLG PV SS+GG GIGLMLAFA+A +GGKL L + Sbjct: 367 IIEIADNGSGIAPELLQRLGRAPVASSSGGSGIGLMLAFASAAHLGGKLRLYS------- 419 Query: 426 TSSGTAAGTAGRGACATLVLPLIA 449 T G+G CA L LPL A Sbjct: 420 --------TPGQGTCAELRLPLSA 435 >ref|YP_003753948.1| sensor histidine kinase [Ralstonia solanacearum PSI07] emb|CBJ52688.1| putative sensor histidine kinase [Ralstonia solanacearum PSI07] Length = 448 Score = 322 bits (824), Expect = 1e-85, Method: Compositional matrix adjust. Identities = 196/442 (44%), Positives = 269/442 (60%), Gaps = 31/442 (7%) Query: 16 LLRLFWMRCVTTLAQGLLVASAIYGMGLSLPLAPLCTVLGLMLAFNGLTWLRMRLPQPVR 75 L RLFW+R + Q +L+ A G+ LP+ PL +V+GL FN LT R+R +PVR Sbjct: 17 LRRLFWLRWILLATQLILMLLAPLIFGVQLPVVPLLSVMGLHAVFNLLTGWRVRRDRPVR 76 Query: 76 EPELFFQLCIDVSALSALLYFTGGATNPFVSFYLPALAVAAAVLPSAYAFGLALYSLACY 135 E+ QL +D++ALSALLYFTGGATNPFVSFYLPALA+AAA+LP A+ GL LY+LA Y Sbjct: 77 HIEITVQLLVDLTALSALLYFTGGATNPFVSFYLPALAIAAAMLPIAHVVGLTLYALAAY 136 Query: 136 SALTYLYQPLHIHDHDQATAYHLAGMWVNFVMSAALITWFVTRMSATVRSRDAQLAQARE 195 S + Y PL++ + A YHLAGMW++FV S+A+I F R+SA +R R+A+LA ARE Sbjct: 137 SMMLGNYIPLNLLNQADAVPYHLAGMWIDFVASSAMIAGFTARLSAALREREAELADARE 196 Query: 196 QQLQDERIVALGTQAASAAHEMSTPLATVAVIAGELRIEAGRNNA-LTMYRDDLAVVEEQ 254 + L+++RI AL +Q AS AHEM TPL+TVAVI GEL+ +A ++++ L YR+DL +E+Q Sbjct: 197 RLLREQRIEALVSQGASVAHEMGTPLSTVAVITGELQHDARQSDSPLAPYREDLRAIEQQ 256 Query: 255 IAVCKTALDRMGMDVQVRQTDAVAPVRLSDWLRHFVDAWRLRHPAISIRLTLPQGAPDLL 314 + +C+ AL R+ Q + +D AP L WL F W+LRHP I + A Sbjct: 257 LELCRAALARL----QRKPSDG-APEPLGLWLPAFTQTWQLRHPDIRLHTESSPAA---- 307 Query: 315 DMAPARDQQLIGQIVQTLLDNAAQAVAENGK--VDVVLSLKKDTVASAVMNSA---IIRV 369 A D IGQI+ LLDNAA++ + G+ V ++L+ + D A + + ++ V Sbjct: 308 -QAVELDAVNIGQILTILLDNAARSQQQAGRDQVPLLLTARIDANADTLREAPRQIVLSV 366 Query: 370 ADDGPGIAPELLKRLGYEPVRSSTGGKGIGLMLAFATARQMGGKLTLAAAAGTSAGTSSG 429 D G G+ +L LG PV S GG GIGL LA TAR++GG + L Sbjct: 367 VDTGLGLPEDLRTALGRTPVPSRHGGHGIGLYLAATTARRLGGTVELRP----------- 415 Query: 430 TAAGTAGRGACATLVLPLIAPN 451 +GA A L LP+ PN Sbjct: 416 ----NPPQGAIAELRLPVAGPN 433 >ref|YP_003747160.1| sensor histidine kinase [Ralstonia solanacearum CFBP2957] emb|CBJ44579.1| putative sensor histidine kinase [Ralstonia solanacearum CFBP2957] Length = 448 Score = 321 bits (822), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 190/419 (45%), Positives = 266/419 (63%), Gaps = 16/419 (3%) Query: 4 LSLSRPLSQHQLLLRLFWMRCVTTLAQGLLVASAIYGMGLSLPLAPLCTVLGLMLAFNGL 63 L L+ P L RLFW+R + Q +L+ A G+ LP+APL +V+GL FN L Sbjct: 5 LPLAAPPLDTSSLRRLFWLRWILLATQLILMLLAPLIFGVQLPVAPLLSVMGLHAVFNLL 64 Query: 64 TWLRMRLPQPVREPELFFQLCIDVSALSALLYFTGGATNPFVSFYLPALAVAAAVLPSAY 123 T R+R +P+R E+ QL +D++ALSALLYFTGGATNPFVSFYLPALA+AAA+LP A+ Sbjct: 65 TGWRVRRDRPIRHIEITAQLLVDLTALSALLYFTGGATNPFVSFYLPALAIAAAMLPLAH 124 Query: 124 AFGLALYSLACYSALTYLYQPLHIHDHDQATAYHLAGMWVNFVMSAALITWFVTRMSATV 183 GL LY+LA YS + Y P+++ + A AYHLAGMW++FV S+A+I F R+SA + Sbjct: 125 VVGLTLYALAAYSMMLGNYIPMNLLNQADAVAYHLAGMWIDFVASSAMIAGFTARLSAAL 184 Query: 184 RSRDAQLAQAREQQLQDERIVALGTQAASAAHEMSTPLATVAVIAGELRIEAGR-NNALT 242 R R+A+LA ARE+ L+++RI AL +Q AS AHEM TPL+TVAVIAGEL+ +A + ++ L Sbjct: 185 REREAELADARERLLREQRIEALVSQGASVAHEMGTPLSTVAVIAGELQHDARQPDSPLV 244 Query: 243 MYRDDLAVVEEQIAVCKTALDRMGMDVQVRQTDAVAPVRLSDWLRHFVDAWRLRHPAISI 302 YR+DL +E+Q+ +C+ AL R+ R+ + P L WL F W+LRHP I + Sbjct: 245 PYREDLRAIEQQLELCRAALARLQ-----RKPNDGTPEPLGLWLPAFTQTWQLRHPDIRL 299 Query: 303 RLTLPQGAPDLLDMAPARDQQLIGQIVQTLLDNAAQAVAENGK--VDVVLSLKKDTVASA 360 + +P + A D +GQI+ LLDNAA++ + G+ V ++L+ + D A Sbjct: 300 HT---ESSP--VAQAVELDAVSVGQILTILLDNAARSQQQAGRDQVPLLLTARIDAGADT 354 Query: 361 VMNSA---IIRVADDGPGIAPELLKRLGYEPVRSSTGGKGIGLMLAFATARQMGGKLTL 416 V + ++ V D G G+ +L LG PV S GG GIGL LA TAR++GG + L Sbjct: 355 VREAPRQIVLSVVDTGLGLPDDLRTALGRTPVPSRHGGHGIGLYLAATTARRLGGTVEL 413 >ref|YP_002983325.1| histidine kinase [Ralstonia pickettii 12D] gb|ACS64653.1| histidine kinase [Ralstonia pickettii 12D] Length = 448 Score = 320 bits (819), Expect = 4e-85, Method: Compositional matrix adjust. Identities = 191/419 (45%), Positives = 260/419 (62%), Gaps = 16/419 (3%) Query: 4 LSLSRPLSQHQLLLRLFWMRCVTTLAQGLLVASAIYGMGLSLPLAPLCTVLGLMLAFNGL 63 LSL+ PL L RLFW+R Q +L+ A G+ LP+ PL +V+GL FN L Sbjct: 5 LSLAAPLLDASSLRRLFWLRWSLLATQLVLMLLAPLVFGVQLPVVPLLSVMGLHALFNLL 64 Query: 64 TWLRMRLPQPVREPELFFQLCIDVSALSALLYFTGGATNPFVSFYLPALAVAAAVLPSAY 123 T R+R +PV+ E+ QL +D++ALSALLYFTGGATNPFVSFYLPALA+AAA+LP A+ Sbjct: 65 TGWRVRRNRPVQHIEITVQLLVDLTALSALLYFTGGATNPFVSFYLPALAIAAAMLPIAH 124 Query: 124 AFGLALYSLACYSALTYLYQPLHIHDHDQATAYHLAGMWVNFVMSAALITWFVTRMSATV 183 GL LY+LA YS + Y PL + + A AYHLAGMW++FV S+A+I F R+SA + Sbjct: 125 VVGLTLYALAAYSMMLGNYIPLKLANQADALAYHLAGMWIDFVASSAMIAGFTARLSAAL 184 Query: 184 RSRDAQLAQAREQQLQDERIVALGTQAASAAHEMSTPLATVAVIAGELRIEAGR-NNALT 242 R DAQL +ARE+ L+++RI AL +Q AS AHEM TPL+TVAVI GEL+ +A + ++ L Sbjct: 185 RESDAQLTEARERLLREQRIEALMSQGASVAHEMGTPLSTVAVITGELQHDAKQPDSPLA 244 Query: 243 MYRDDLAVVEEQIAVCKTALDRMGMDVQVRQTDAVAPVRLSDWLRHFVDAWRLRHPAISI 302 YR+DL +E+Q+ +C+ AL R+ Q + D AP L WL F W+LRHP I + Sbjct: 245 PYREDLRAIEQQLELCRAALARL----QSKPNDG-APEPLGQWLPGFTQTWQLRHPDIRL 299 Query: 303 RLTLPQGAPDLLDMAPARDQQLIGQIVQTLLDNAAQAVAENGK--VDVVLSLKKDTVASA 360 A A D +GQI+ LLDNAA++ G+ V ++L+ + D Sbjct: 300 HTEASPAA-----QAVELDAVNVGQILTILLDNAARSQHHAGRDLVPLLLTARIDANPDT 354 Query: 361 VMN---SAIIRVADDGPGIAPELLKRLGYEPVRSSTGGKGIGLMLAFATARQMGGKLTL 416 + ++ + D G G+ +L LG PV S GG+GIGL LA TAR++GG +TL Sbjct: 355 PRDMPPQIVLSIVDTGLGLPEDLRASLGRTPVPSRHGGRGIGLYLASTTARRLGGTVTL 413 >ref|ZP_00944228.1| Sensory transduction protein kinase [Ralstonia solanacearum UW551] gb|EAP73295.1| Sensory transduction protein kinase [Ralstonia solanacearum UW551] Length = 448 Score = 320 bits (819), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 189/419 (45%), Positives = 265/419 (63%), Gaps = 16/419 (3%) Query: 4 LSLSRPLSQHQLLLRLFWMRCVTTLAQGLLVASAIYGMGLSLPLAPLCTVLGLMLAFNGL 63 L L+ P L RLFW+R + Q +L+ A G+ LP+ PL +V+GL FN L Sbjct: 5 LPLAAPPLDTSSLRRLFWLRWILLATQLILMLLAPLIFGVQLPVVPLLSVMGLHAVFNLL 64 Query: 64 TWLRMRLPQPVREPELFFQLCIDVSALSALLYFTGGATNPFVSFYLPALAVAAAVLPSAY 123 T R+R +P+R E+ QL +D++ALSALLYFTGGATNPFVSFYLPALA+AAA+LP A+ Sbjct: 65 TGWRVRRDRPIRHIEITAQLLVDLTALSALLYFTGGATNPFVSFYLPALAIAAAMLPLAH 124 Query: 124 AFGLALYSLACYSALTYLYQPLHIHDHDQATAYHLAGMWVNFVMSAALITWFVTRMSATV 183 GL LY+LA YS + Y P+++ + A AYHLAGMW++FV S+A+I F R+SA + Sbjct: 125 VVGLTLYALAAYSMMLGNYIPMNLLNQADAVAYHLAGMWIDFVASSAMIAGFTARLSAAL 184 Query: 184 RSRDAQLAQAREQQLQDERIVALGTQAASAAHEMSTPLATVAVIAGELRIEAGR-NNALT 242 R R+A+LA ARE+ L+++RI AL +Q AS AHEM TPL+TVAVIAGEL+ +A + ++ L Sbjct: 185 REREAELADARERLLREQRIEALVSQGASVAHEMGTPLSTVAVIAGELQHDARQPDSPLV 244 Query: 243 MYRDDLAVVEEQIAVCKTALDRMGMDVQVRQTDAVAPVRLSDWLRHFVDAWRLRHPAISI 302 YR+DL +E+Q+ +C+ AL R+ R+ + P L WL F W+LRHP I + Sbjct: 245 PYREDLRAIEQQLELCRAALARLQ-----RKPNDGTPEPLGLWLPAFTQTWQLRHPDIRL 299 Query: 303 RLTLPQGAPDLLDMAPARDQQLIGQIVQTLLDNAAQAVAENGK--VDVVLSLKKDTVASA 360 + +P + A D +GQI+ LLDNAA++ + G+ V ++L+ + D A Sbjct: 300 HT---ESSP--VAQAVELDAVSVGQILTILLDNAARSQQQAGRDQVPLLLTARIDAGADT 354 Query: 361 VMNSA---IIRVADDGPGIAPELLKRLGYEPVRSSTGGKGIGLMLAFATARQMGGKLTL 416 V + ++ V D G G+ +L LG PV S GG GIGL LA TAR++GG + L Sbjct: 355 VREAPRQIVLSVVDTGLGLPEDLRTALGRTPVPSRHGGHGIGLYLAATTARRLGGTVEL 413