BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0015.0015.p (490 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_001351755.1| hypothetical protein mma_0065 [Janthinobacte... 488 e-135 ref|YP_002944018.1| PepSY-associated TM helix domain-containing ... 463 e-128 ref|ZP_06689566.1| PepSY-associated TM helix protein [Achromobac... 444 e-122 ref|YP_001564673.1| hypothetical protein Daci_3656 [Delftia acid... 439 e-121 ref|YP_003981256.1| PepSY-associated TM helix family protein 9 [... 435 e-120 >ref|YP_001351755.1| hypothetical protein mma_0065 [Janthinobacterium sp. Marseille] gb|ABR90922.1| Uncharacterized conserved protein [Janthinobacterium sp. Marseille] Length = 506 Score = 488 bits (1256), Expect = e-135, Method: Compositional matrix adjust. Identities = 248/491 (50%), Positives = 320/491 (65%), Gaps = 4/491 (0%) Query: 3 RAKRWLFLIHRWLGIVACLFMLLWFVSGVVMMYVGYPKLTQSERLARLPDLDAARCCIAV 62 RAKR +L HRW G+ AC+ M LWF+SG+VM++VGYPKLT ERL LP L CC+ + Sbjct: 6 RAKRLTYLFHRWTGVAACVLMALWFISGIVMLFVGYPKLTPWERLQALPALQTQDCCVPL 65 Query: 63 GEAARVLPAEARPSSIVLTSVAGRPQYQFGIGK-KIIAVDALSGAAVTDVDVKDALAAAQ 121 + A IVLTS+ P Y+ GK + +DA SG +D + ALA A+ Sbjct: 66 DKVLAHSKAPGAVQEIVLTSIRQHPYYRLREGKGSYLIIDAHSGKPAPAMDTEAALAGAR 125 Query: 122 VFMPGATPRYLDRIDEDTWTHTRGLDLHRPLHRVQMDDPEQTLLYVSSVTGEVMRKATHT 181 F+P A YL + ED WTH R LD+HRPLH+VQMDD +LLY+S TG+V+ A Sbjct: 126 AFIPHADAHYLGTVQEDRWTHARSLDVHRPLHQVQMDDGAHSLLYLSDATGQVVMDAPRA 185 Query: 182 ERVWNYAGAWLHWLYAFRGGPLDAAWSHIVIYLSLAGVLVAVSGSVIGIWRWRFRGRFRS 241 +R+WNY GAWL+WLY FR P+D WS IVI LS G + AV+G++ GIWRWRFRGR++S Sbjct: 186 QRMWNYVGAWLYWLYMFRDKPVDPVWSWIVIVLSAIGTVTAVTGTLAGIWRWRFRGRYKS 245 Query: 242 GAKTPYREPVMRWHHLIGLAFAGITLTWVFSGLMSMNPWGLFKGGGVELNRRAYAGGTLD 301 GA+TPYRE + WHH+IGL+FA I TW+FSGLMSMNP G+F G + N AY G T Sbjct: 246 GARTPYREAYLHWHHIIGLSFAAIIFTWIFSGLMSMNPLGVFDARGEKPNSAAYRGATPG 305 Query: 302 PAAWPLGSGDALRLLPP-SWQARELRWHMLDGKPYLIAVNGAGRTRVI--DAAERRVDEG 358 PL + AL LL ++A E+ W +LDG+PYL+A N A TR+I + +V E Sbjct: 306 AMHLPLNATQALDLLNDVHFRATEMEWRVLDGRPYLLARNAANATRLIVNEGGNYKVRER 365 Query: 359 IPEAQLMRAAAKLVDAPLAGSELLQREDAYYYSREAHTMMGGMRHPLPVLRLRYADAAQT 418 + +L++AA +L+ AP+ ++L++ D YYY R+ MMG LP LR+R+ + QT Sbjct: 366 WSDVELLQAAKRLLPAPILDHQVLEQYDTYYYGRQQEAMMGAAERRLPALRIRFDETHQT 425 Query: 419 WVHIDPATGVVLGKLDGTQRVKRWLFAFLHSWDLPVLLSSRPLWDIALILLSLGGLALSL 478 WVH+DP TG V D QRV RWLFAFLHSWDLP +L + L D LILLSLGG AL + Sbjct: 426 WVHLDPFTGDVESSSDNAQRVGRWLFAFLHSWDLPPMLQAGALRDAILILLSLGGFALCI 485 Query: 479 TGVVIGVRRLR 489 TG+VIG RRLR Sbjct: 486 TGIVIGWRRLR 496 >ref|YP_002944018.1| PepSY-associated TM helix domain-containing protein [Variovorax paradoxus S110] gb|ACS18752.1| PepSY-associated TM helix domain protein [Variovorax paradoxus S110] Length = 519 Score = 463 bits (1192), Expect = e-128, Method: Compositional matrix adjust. Identities = 244/491 (49%), Positives = 312/491 (63%), Gaps = 4/491 (0%) Query: 2 QRAKRWLFLIHRWLGIVACLFMLLWFVSGVVMMYVGYPKLTQSERLARLPDLDAARCCIA 61 +R KR +L+HRW G+ AC+ M LWFVSGVVM++VGYPKLT ER+ LP LD RCC+ Sbjct: 5 KRMKRLTYLVHRWTGVGACVLMALWFVSGVVMLFVGYPKLTPWERMRTLPALDPTRCCVP 64 Query: 62 VGEAARVLPAEARPSSIVLTSVAGRPQYQFGIGK-KIIAVDALSGAAVTDVDVKDALAAA 120 V A A R ++LTSV GRP Y+ K + VDA G V D AL AA Sbjct: 65 VDVALSATGASGRAQEVILTSVDGRPTYRLRTADGKYLLVDAAEGKPVPPADAGSALDAA 124 Query: 121 QVFMPGATPRYLDRIDEDTWTHTRGLDLHRPLHRVQMDDPEQTLLYVSSVTGEVMRKATH 180 ++F+ G Y+ + ED WTH+RGLD HRPLH ++M D T LYVSS TG+V+ A Sbjct: 125 RLFVSGGEGEYVGLVREDRWTHSRGLDAHRPLHVLEMGDAAHTRLYVSSATGQVVMDAPR 184 Query: 181 TERVWNYAGAWLHWLYAFRGGPLDAAWSHIVIYLSLAGVLVAVSGSVIGIWRWRFRGRFR 240 +R+WNY GAWLHW+Y FR +D WS IVI LS VL +V+G+V GIWRWRF GR++ Sbjct: 185 AQRMWNYVGAWLHWVYMFRDRSVDPGWSLIVIVLSAVCVLTSVTGTVAGIWRWRFSGRYK 244 Query: 241 SGAKTPYREPVMRWHHLIGLAFAGITLTWVFSGLMSMNPWGLFKGGGVELNRRAYAGGTL 300 SG+++PYRE + WHH++GLAFA I TW+FSGLMSMNP G+F G + Y G Sbjct: 245 SGSRSPYREFHLHWHHVLGLAFASIVFTWIFSGLMSMNPAGIFDARGPRPDMAQYRGNVP 304 Query: 301 DPAAWPLGSGDALRLLPPS-WQARELRWHMLDGKPYLIAVNGAGRTR-VIDAAER-RVDE 357 A + ALRLL S + A EL W +LDG+P+++A N A TR V+ +R RV + Sbjct: 305 GTARLDIPVAQALRLLEASRFAASELEWRVLDGRPFILARNAANDTRLVVQENDRYRVLD 364 Query: 358 GIPEAQLMRAAAKLVDAPLAGSELLQREDAYYYSREAHTMMGGMRHPLPVLRLRYADAAQ 417 P A L AA +L+ AP+ E L+ DAYYY R+ MMG LPV RLR+ D Sbjct: 365 RWPRADLAHAARQLLAAPILTQEELEHYDAYYYERQPEAMMGAAERRLPVARLRFGDPHD 424 Query: 418 TWVHIDPATGVVLGKLDGTQRVKRWLFAFLHSWDLPVLLSSRPLWDIALILLSLGGLALS 477 TWV++D TG V D +QR RWLF+FLHSWDLP +L + L D LI+ SLGGL +S Sbjct: 425 TWVYLDARTGDVALSADRSQRAGRWLFSFLHSWDLPAMLRAEALRDAVLIVFSLGGLLVS 484 Query: 478 LTGVVIGVRRL 488 +TG+VIG RR+ Sbjct: 485 VTGIVIGYRRV 495 >ref|ZP_06689566.1| PepSY-associated TM helix protein [Achromobacter piechaudii ATCC 43553] gb|EFF73457.1| PepSY-associated TM helix protein [Achromobacter piechaudii ATCC 43553] Length = 507 Score = 444 bits (1141), Expect = e-122, Method: Compositional matrix adjust. Identities = 247/488 (50%), Positives = 310/488 (63%), Gaps = 8/488 (1%) Query: 3 RAKRWLFLIHRWLGIVACLFMLLWFVSGVVMMYVGYPKLTQSERLARLPDLDAARCCIAV 62 RAKRWL+LIHRW GIV CLF +WF+SGVVMMYVGYPKLT ERL L LD A + Sbjct: 20 RAKRWLYLIHRWAGIVLCLFFAMWFISGVVMMYVGYPKLTPHERLTHLAPLDPATLAVTP 79 Query: 63 GEAARVLPAEARPSSIVLTSVAGRPQYQFGIGKKIIAVDALSGAAVTDVDVKDALAAAQV 122 +A A P + S AG P Y G VDA +GA + D A A A Sbjct: 80 EQALAAAGAGDTPGLSLAASRAGAPVYLVP-GATPKVVDAATGALLPPADPAVAKATALA 138 Query: 123 FMPGATP-RYLDRIDEDTWTHTRGLDLHRPLHRVQMDDPEQTLLYVSSVTGEVMRKATHT 181 + G R+ + +DED +TH++ L++HRPLHRV MDDP +T LYVSS TG V+ AT Sbjct: 139 WFGGQYAVRHQETVDEDVYTHSKSLNVHRPLHRVDMDDPARTRLYVSSATGAVVLDATRN 198 Query: 182 ERVWNYAGAWLHWLYAFRGGPLDAAWSHIVIYLSLAGVLVAVSGSVIGIWRWRFRGRFRS 241 ER WNYAGAW+HWLY RG LD W +V++LS+AGVLVAV+G+V+GI RWRF + + Sbjct: 199 ERAWNYAGAWIHWLYPLRGNVLDRWWHDVVVWLSVAGVLVAVTGTVVGILRWRFSRPYAT 258 Query: 242 GAKTPYREPVMRWHHLIGLAFAGITLTWVFSGLMSMNPWGLFKGGGVELNRRAYAGGTLD 301 G+++PYRE +MRWHH+ GL FA IT+TW+FSGLMSMNPW LF L AYAG D Sbjct: 259 GSRSPYRESMMRWHHISGLLFAAITITWMFSGLMSMNPWKLFTSKAAPLAVSAYAGPAAD 318 Query: 302 PAAWPLGSGDALRLLPPSWQARELRWHMLDGKPYLIAVNGAGRTRVIDAAERRVDEGIPE 361 L + DAL P+ REL W G+ +A G RV+ A + E Sbjct: 319 TT---LAAPDALIAALPT-APRELVWARAAGQDVALARTTVGTPRVLSAID-ATPTAYAE 373 Query: 362 AQLMRAAAKLVD-APLAGSELLQREDAYYYSREAHTMMGGMRHPLPVLRLRYADAAQTWV 420 A L +AAA+L+ A + ++L D YYY+R+AH M+G + PLPV R+ Y + +WV Sbjct: 374 ADLRQAAARLLPGATVREVQVLHAYDLYYYARDAHAMLGHVEKPLPVWRVVYDNPQASWV 433 Query: 421 HIDPATGVVLGKLDGTQRVKRWLFAFLHSWDLPVLLSSRPLWDIALILLSLGGLALSLTG 480 ++DP TG ++G+ D + RV RWLFAFLHSWD LLS RP WD+ LI+LSLGG ALSLTG Sbjct: 434 YLDPVTGQIVGRQDRSTRVNRWLFAFLHSWDWTGLLSRRPAWDVLLIVLSLGGAALSLTG 493 Query: 481 VVIGVRRL 488 VVIG RRL Sbjct: 494 VVIGWRRL 501 >ref|YP_001564673.1| hypothetical protein Daci_3656 [Delftia acidovorans SPH-1] gb|ABX36288.1| conserved hypothetical protein [Delftia acidovorans SPH-1] Length = 510 Score = 439 bits (1128), Expect = e-121, Method: Compositional matrix adjust. Identities = 257/491 (52%), Positives = 309/491 (62%), Gaps = 19/491 (3%) Query: 5 KRWLFLIHRWLGIVACLFMLLWFVSGVVMMYVGYPKLTQSERLARLPDLDAARCCIAVGE 64 KRWLFL+HRWLGI CLF LWFVSG+VM+YVGYPKLT++ERL LP LD +A E Sbjct: 6 KRWLFLLHRWLGIAVCLFFALWFVSGMVMIYVGYPKLTEAERLRHLPPLDGNAALLAPAE 65 Query: 65 AARVLPAEARPSSIVL-TSVAGRPQYQFGIG--KKIIAVDALSGAAVTDVDVKDALAAAQ 121 A R + + L AGR Y ++ +A+DA SG + ALA+A+ Sbjct: 66 ALRAAGIDGPLKDLRLHAGSAGRASYLATPEGRRQPVAIDAASGQVLGATSEAQALASAR 125 Query: 122 VFM-PGATPRYLDRIDEDTWTHTRGLDLHRPLHRVQMDDPEQTLLYVSSVTGEVMRKATH 180 F G YL +DED ++H+R LD+HRPLHRVQ+DD + TLLY+S T EV+R AT Sbjct: 126 AFAGDGTGLYYLGTVDEDAFSHSRALDIHRPLHRVQLDDAQGTLLYISGRTAEVVRDATR 185 Query: 181 TERVWNYAGAWLHWLYAFRGGPLDAAWSHIVIYLSLAGVLVAVSGSVIGIWRWRFRGRFR 240 TER WNY GAWLHWLY FRG D AW+ IV LSL G+ VA +G+V+G+ RWRFR +R Sbjct: 186 TERGWNYLGAWLHWLYMFRGNAFDGAWADIVNVLSLVGIAVATTGTVVGVMRWRFRQPYR 245 Query: 241 SGAKTPYREPVMRWHHLIGLAFAGITLTWVFSGLMSMNPWGLFKGGGVELNRRAYAGGTL 300 SG +TPY MRWHH+ GL FA TL W+FSGLMSMNPW LF G L+ + G L Sbjct: 246 SGRRTPYPGLAMRWHHVAGLLFALTTLAWIFSGLMSMNPWRLFDTGTPPLHMARWQQGPL 305 Query: 301 DPAAWPLGSGDALRLLPPSWQA------RELRWHMLDGKPYLIAVNGAGRTRVIDAAERR 354 L GDA P S A RELRW G+ ++A AG V+D+A Sbjct: 306 R-----LTGGDA---TPQSLIAAAGGPVRELRWLRTAGRTEVLAQPAAGTPLVLDSASAA 357 Query: 355 VDEGIPEAQLMRAAAKLVDAPLAGSELLQREDAYYYSREAHTMMGGMRHPLPVLRLRYAD 414 EA L RAA L+DAP+ SE L D Y+Y R HTMMGG PLPV+R+ Y D Sbjct: 358 PVTHSREALLDRAAV-LIDAPVLRSEWLTAHDLYWYERAEHTMMGGHDKPLPVMRVVYGD 416 Query: 415 AAQTWVHIDPATGVVLGKLDGTQRVKRWLFAFLHSWDLPVLLSSRPLWDIALILLSLGGL 474 AA +WVHIDP TG VLG+LDGTQR+KRWLFA LHSWD LL RPLWD L+ SLGGL Sbjct: 417 AAASWVHIDPHTGQVLGRLDGTQRLKRWLFAMLHSWDWLPLLQRRPLWDALLLAFSLGGL 476 Query: 475 ALSLTGVVIGV 485 +S TGV+IGV Sbjct: 477 LMSATGVLIGV 487 >ref|YP_003981256.1| PepSY-associated TM helix family protein 9 [Achromobacter xylosoxidans A8] gb|ADP18541.1| PepSY-associated TM helix family protein 9 [Achromobacter xylosoxidans A8] Length = 509 Score = 435 bits (1119), Expect = e-120, Method: Compositional matrix adjust. Identities = 248/489 (50%), Positives = 307/489 (62%), Gaps = 8/489 (1%) Query: 3 RAKRWLFLIHRWLGIVACLFMLLWFVSGVVMMYVGYPKLTQSERLARLPDLDAARCCIAV 62 RAKRWL+LIHRW GIV CLF +WF+SGVVMMYVGYPKLT ERLA LP LDAA + Sbjct: 20 RAKRWLYLIHRWTGIVLCLFFAMWFISGVVMMYVGYPKLTPQERLAHLPALDAATIAVTP 79 Query: 63 GEAARVLPAEARPSSIVLTSVAGRPQYQFGIGKKII--AVDALSGAAVTDVDVKDALAAA 120 +A + ++ + G P Y + VDA SGA + D ALA A Sbjct: 80 AQALTAAGTKDSAGLVLAAARGGAPVYLVPTEARRAPKVVDAASGALLPPADAAAALATA 139 Query: 121 QVFMPGA-TPRYLDRIDEDTWTHTRGLDLHRPLHRVQMDDPEQTLLYVSSVTGEVMRKAT 179 + + G Y +DED +TH+R L RPLHRV +DDP +T LY+SS TG V+ AT Sbjct: 140 RAWSGGQYAAHYQGTVDEDAYTHSRALGPDRPLHRVDLDDPARTRLYISSATGMVVLDAT 199 Query: 180 HTERVWNYAGAWLHWLYAFRGGPLDAAWSHIVIYLSLAGVLVAVSGSVIGIWRWRFRGRF 239 ERVWNYAGAW+HWLY FRG LD W IV++LS+AGVL+AV+G+V+GI RWRF + Sbjct: 200 RAERVWNYAGAWIHWLYPFRGNALDGWWHDIVVWLSVAGVLLAVTGTVVGILRWRFSRPY 259 Query: 240 RSGAKTPYREPVMRWHHLIGLAFAGITLTWVFSGLMSMNPWGLFKGGGVELNRRAYAGGT 299 SG+++PYRE +MRWHH GL FA IT+TW+FSGLMSMNPW LF G L + AYAG Sbjct: 260 ASGSRSPYRENIMRWHHWSGLLFAAITITWIFSGLMSMNPWKLFSSGAPPLAQAAYAGA- 318 Query: 300 LDPAAWPLGSGDALRLLPPSWQARELRWHMLDGKPYLIAVNGAGRTRVIDAAERRVDEGI 359 P A G+ + LP + RELRW DG+ ++A + AG V+ A + + Sbjct: 319 --PGASLAAPGELIAALPAT--PRELRWARADGQDVVLARSAAGAPMVLSARDAQPHAFD 374 Query: 360 PEAQLMRAAAKLVDAPLAGSELLQREDAYYYSREAHTMMGGMRHPLPVLRLRYADAAQTW 419 A AA + A LA +E L+ D YYY+R+ H M+G + PLPV RL Y D TW Sbjct: 375 RAALRAAAARLVPGARLASAETLEAYDFYYYARDEHAMLGHVEKPLPVWRLAYDDPQATW 434 Query: 420 VHIDPATGVVLGKLDGTQRVKRWLFAFLHSWDLPVLLSSRPLWDIALILLSLGGLALSLT 479 V++DP TG ++ + D R RWLFAFLHSWD LLS RPLWD L+ LSLGG ALSLT Sbjct: 435 VYLDPRTGQIVSRQDSGSRASRWLFAFLHSWDWTGLLSRRPLWDALLVFLSLGGAALSLT 494 Query: 480 GVVIGVRRL 488 G VIG RRL Sbjct: 495 GAVIGWRRL 503