BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0014.0002.p (375 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773608.1| branched-chain amino acid ABC transporter pe... 654 0.0 ref|YP_004754192.1| extracellular ligand-binding receptor [Colli... 593 e-167 ref|YP_004847757.1| extracellular ligand-binding receptor [Pseud... 459 e-127 ref|ZP_03697456.1| Extracellular ligand-binding receptor [Lutiel... 458 e-127 ref|YP_524053.1| extracellular ligand-binding receptor [Rhodofer... 424 e-116 >ref|YP_003773608.1| branched-chain amino acid ABC transporter periplasmic protein [Herbaspirillum seropedicae SmR1] emb|CAP19683.1| periplasmic component protein [Herbaspirillum seropedicae] gb|ADJ61700.1| ABC-type branched-chain amino acid transport system, periplasmic component protein [Herbaspirillum seropedicae SmR1] Length = 378 Score = 654 bits (1687), Expect = 0.0, Method: Compositional matrix adjust. Identities = 319/378 (84%), Positives = 348/378 (92%), Gaps = 3/378 (0%) Query: 1 MYNR---MHIIAASLAIIPAFASAQEVQTVKIGFSSPLTGPQASAGKDNQGGLQMAVERL 57 M+ R ++IIAASLA+IPAFA AQE Q VKIGFSSPLTGPQASAGKDNQGGL MA+ERL Sbjct: 1 MFKRVSGLNIIAASLALIPAFAMAQETQVVKIGFSSPLTGPQASAGKDNQGGLMMAIERL 60 Query: 58 NTQGLVIGGKKIKFEIVAEDDQADPKSGVGVAQKLVDQGVKAIVGPYNSGVTIPASRVYN 117 N Q + +GGKKIKF+++AEDDQADPKSGV VAQKL DQGVKAIVGPYNSGVTIPASRVYN Sbjct: 61 NAQPITVGGKKIKFDVIAEDDQADPKSGVAVAQKLADQGVKAIVGPYNSGVTIPASRVYN 120 Query: 118 DAGIVTATVASNPKITQQGFATLYRVAASDSQLGGKMALYAAKELKIKTVSVIDDRTAYG 177 DAGIV ATVASNPKITQQGFATL+RVAASDSQLGGKMALYAAKELK K V+VIDDRTAYG Sbjct: 121 DAGIVVATVASNPKITQQGFATLFRVAASDSQLGGKMALYAAKELKFKRVAVIDDRTAYG 180 Query: 178 QGLAEEFIKLAQANGIKVVSKDFTNDKATDFTAILTSIKGKKPQAVFIGGYAPQGGPIKR 237 QGLA+EFIK+A+ANGI VVS DFTNDKATDFTAILTSIKGKKP AVF+GGYAPQGGPIKR Sbjct: 181 QGLAQEFIKVAKANGIDVVSTDFTNDKATDFTAILTSIKGKKPDAVFLGGYAPQGGPIKR 240 Query: 238 QMKQLGIDALLMGGDGICSPEMGRLGGDAIGESVYCTQGGTILEKAKEGKAFADDYQKKF 297 QMKQLG+D LMGGDGICSPEMGRLGGDAIGESVYCTQGGT+L+KAKEGK F+D+YQKK+ Sbjct: 241 QMKQLGVDVPLMGGDGICSPEMGRLGGDAIGESVYCTQGGTMLDKAKEGKVFSDEYQKKY 300 Query: 298 GRPAEVYAVSFYDGMMVIAQAMKAANSVEPKVYGPALAKIKYKGVAGQYEFDDKHDLKQS 357 RPAE YAVSFYDGMM+IAQAMK ANSV+PK +GPALAKI YKGVAGQY+FD HDLKQS Sbjct: 301 NRPAETYAVSFYDGMMLIAQAMKQANSVDPKQFGPALAKISYKGVAGQYDFDANHDLKQS 360 Query: 358 PVTIFRFKDGVPVALTSY 375 PVT++RFKDG+PV LTSY Sbjct: 361 PVTVYRFKDGLPVPLTSY 378 >ref|YP_004754192.1| extracellular ligand-binding receptor [Collimonas fungivorans Ter331] gb|AEK63369.1| Extracellular ligand-binding receptor [Collimonas fungivorans Ter331] Length = 375 Score = 593 bits (1530), Expect = e-167, Method: Compositional matrix adjust. Identities = 287/375 (76%), Positives = 320/375 (85%) Query: 1 MYNRMHIIAASLAIIPAFASAQEVQTVKIGFSSPLTGPQASAGKDNQGGLQMAVERLNTQ 60 MY R ++ LA PA AQE Q VKIGFS PLTGPQASAG+DNQGGL MA+++LN+Q Sbjct: 1 MYARTKLMMVMLAAFPALVMAQETQVVKIGFSGPLTGPQASAGRDNQGGLAMAIDKLNSQ 60 Query: 61 GLVIGGKKIKFEIVAEDDQADPKSGVGVAQKLVDQGVKAIVGPYNSGVTIPASRVYNDAG 120 G+VIGGKKIKFE EDDQADP++GVGVAQKLVD GVKA+VGPYNSGVTIPASRVYNDAG Sbjct: 61 GMVIGGKKIKFEAQMEDDQADPRAGVGVAQKLVDMGVKAVVGPYNSGVTIPASRVYNDAG 120 Query: 121 IVTATVASNPKITQQGFATLYRVAASDSQLGGKMALYAAKELKIKTVSVIDDRTAYGQGL 180 IV TVASNPK+T QGF +++RVAASDSQLGGKMALYAAKELK+KTV++IDDRTAYGQGL Sbjct: 121 IVMGTVASNPKVTLQGFHSVFRVAASDSQLGGKMALYAAKELKVKTVAIIDDRTAYGQGL 180 Query: 181 AEEFIKLAQANGIKVVSKDFTNDKATDFTAILTSIKGKKPQAVFIGGYAPQGGPIKRQMK 240 AEEF K+A+ANGIKV+ DFTNDKATDFTAILTSIK KKP A+F GGY+PQGGP+ RQMK Sbjct: 181 AEEFSKVAKANGIKVLGNDFTNDKATDFTAILTSIKSKKPDAIFYGGYSPQGGPMMRQMK 240 Query: 241 QLGIDALLMGGDGICSPEMGRLGGDAIGESVYCTQGGTILEKAKEGKAFADDYQKKFGRP 300 QLG+ A +GGDGIC+PEMGRLGGDAI + VYCTQGG +L+K GK FA DYQK++ RP Sbjct: 241 QLGVSAKFLGGDGICAPEMGRLGGDAITDQVYCTQGGAMLDKLASGKTFAADYQKRYNRP 300 Query: 301 AEVYAVSFYDGMMVIAQAMKAANSVEPKVYGPALAKIKYKGVAGQYEFDDKHDLKQSPVT 360 AE YA SFYDGMMVIAQAMK ANSVEPK Y AL KI YKGVAG YEFD HDLKQSPVT Sbjct: 301 AETYAASFYDGMMVIAQAMKDANSVEPKQYVSALEKIHYKGVAGSYEFDANHDLKQSPVT 360 Query: 361 IFRFKDGVPVALTSY 375 +FRFK GVP ALTSY Sbjct: 361 VFRFKGGVPEALTSY 375 >ref|YP_004847757.1| extracellular ligand-binding receptor [Pseudogulbenkiania sp. NH8B] dbj|BAK77343.1| extracellular ligand-binding receptor [Pseudogulbenkiania sp. NH8B] Length = 382 Score = 459 bits (1182), Expect = e-127, Method: Compositional matrix adjust. Identities = 214/369 (57%), Positives = 285/369 (77%) Query: 2 YNRMHIIAASLAIIPAFASAQEVQTVKIGFSSPLTGPQASAGKDNQGGLQMAVERLNTQG 61 + + AA LA+ P A E TVKIG + PLTGPQA+ GKD++ GL+MA++RLN QG Sbjct: 8 FRTKFVFAAGLALTPLLGFAAEEMTVKIGLTGPLTGPQAAIGKDHENGLRMAMDRLNAQG 67 Query: 62 LVIGGKKIKFEIVAEDDQADPKSGVGVAQKLVDQGVKAIVGPYNSGVTIPASRVYNDAGI 121 +V+GGKK++FE+++EDD ADP++G+ VAQ+ VD VKA++GPYNSGV IP S++ NDAGI Sbjct: 68 IVVGGKKVRFEMMSEDDGADPRTGMTVAQRFVDANVKAVIGPYNSGVAIPISKLLNDAGI 127 Query: 122 VTATVASNPKITQQGFATLYRVAASDSQLGGKMALYAAKELKIKTVSVIDDRTAYGQGLA 181 V ATVASNPK+TQ G+ ++R+ ASD+QLG KM ++AAK LK K+ ++IDDRTAYGQG+A Sbjct: 128 VMATVASNPKVTQNGYPYVFRIGASDTQLGTKMGVFAAKNLKAKSFAIIDDRTAYGQGVA 187 Query: 182 EEFIKLAQANGIKVVSKDFTNDKATDFTAILTSIKGKKPQAVFIGGYAPQGGPIKRQMKQ 241 +EFIK A+ANGI++V+++FT DK+TDF+AILTSIK KP +F GGY QGGP++RQM + Sbjct: 188 DEFIKAAKANGIQIVAREFTTDKSTDFSAILTSIKAAKPDGIFYGGYYSQGGPMRRQMAR 247 Query: 242 LGIDALLMGGDGICSPEMGRLGGDAIGESVYCTQGGTILEKAKEGKAFADDYQKKFGRPA 301 LG+ A L+GGDGIC+ E+ +LGG + VYC QGG +LE+ EGK F +Y+K+F Sbjct: 248 LGLKAYLLGGDGICNEELAKLGGATVDGGVYCPQGGPVLEQTSEGKQFTTEYKKRFSIEP 307 Query: 302 EVYAVSFYDGMMVIAQAMKAANSVEPKVYGPALAKIKYKGVAGQYEFDDKHDLKQSPVTI 361 VY S YDG+ +IA+AM+ ANSVEPK Y ALA I +GVAG Y+FDDK DLK SP+T+ Sbjct: 308 LVYGASMYDGLNIIAKAMQKANSVEPKQYRAALAAISQQGVAGTYQFDDKRDLKNSPITV 367 Query: 362 FRFKDGVPV 370 + FK+G PV Sbjct: 368 YSFKNGQPV 376 >ref|ZP_03697456.1| Extracellular ligand-binding receptor [Lutiella nitroferrum 2002] gb|EEG09942.1| Extracellular ligand-binding receptor [Lutiella nitroferrum 2002] Length = 381 Score = 458 bits (1178), Expect = e-127, Method: Compositional matrix adjust. Identities = 213/369 (57%), Positives = 284/369 (76%) Query: 2 YNRMHIIAASLAIIPAFASAQEVQTVKIGFSSPLTGPQASAGKDNQGGLQMAVERLNTQG 61 + + AA LA+ P A E TVKIG + PLTGPQA+ GKD++ GL+MA++RLN QG Sbjct: 7 FRTKFVFAAGLALTPLLGFAAEEMTVKIGLTGPLTGPQAAIGKDHENGLRMAMDRLNAQG 66 Query: 62 LVIGGKKIKFEIVAEDDQADPKSGVGVAQKLVDQGVKAIVGPYNSGVTIPASRVYNDAGI 121 +V+GGKK++FE+++EDD ADP++G+ VAQ+ VD VKA++GPYNSGV IP S++ NDAGI Sbjct: 67 IVVGGKKVRFEMMSEDDGADPRTGMTVAQRFVDANVKAVIGPYNSGVAIPISKLLNDAGI 126 Query: 122 VTATVASNPKITQQGFATLYRVAASDSQLGGKMALYAAKELKIKTVSVIDDRTAYGQGLA 181 V ATVASNPK+TQ G+ ++R+ ASD+QLG KM ++AAK LK K+ ++IDDRTAYGQG+A Sbjct: 127 VMATVASNPKVTQNGYPYVFRIGASDTQLGTKMGVFAAKNLKAKSFAIIDDRTAYGQGVA 186 Query: 182 EEFIKLAQANGIKVVSKDFTNDKATDFTAILTSIKGKKPQAVFIGGYAPQGGPIKRQMKQ 241 +EFIK A+ANGI++V+++FT DK+TDF+AILTSIK KP +F GGY QGGP++RQM + Sbjct: 187 DEFIKAAKANGIQIVAREFTTDKSTDFSAILTSIKAAKPDGIFYGGYYSQGGPMRRQMAR 246 Query: 242 LGIDALLMGGDGICSPEMGRLGGDAIGESVYCTQGGTILEKAKEGKAFADDYQKKFGRPA 301 LG+ A L+GGDGIC+ E+ +LGG + VYC QGG +LE+ EGK F +Y+K+F Sbjct: 247 LGLKAYLLGGDGICNEELAKLGGTTVDGGVYCPQGGPVLEQTSEGKQFTTEYKKRFSIEP 306 Query: 302 EVYAVSFYDGMMVIAQAMKAANSVEPKVYGPALAKIKYKGVAGQYEFDDKHDLKQSPVTI 361 VY S YDG+ +IA+AM+ ANSVEPK Y ALA +GVAG Y+FDDK DLK SP+T+ Sbjct: 307 LVYGASMYDGLNIIAKAMQKANSVEPKQYRAALAASNQQGVAGTYQFDDKRDLKNSPITV 366 Query: 362 FRFKDGVPV 370 + FK+G PV Sbjct: 367 YSFKNGQPV 375 >ref|YP_524053.1| extracellular ligand-binding receptor [Rhodoferax ferrireducens T118] gb|ABD70522.1| Extracellular ligand-binding receptor [Rhodoferax ferrireducens T118] Length = 377 Score = 424 bits (1091), Expect = e-116, Method: Compositional matrix adjust. Identities = 201/366 (54%), Positives = 277/366 (75%), Gaps = 4/366 (1%) Query: 13 AIIPAFAS---AQEVQTVKIGFSSPLTGPQASAGKDNQGGLQMAVERLNTQGLVIGGKKI 69 A+ AFAS AQE Q V IG + PL+G A AGKDN+ G+++A+E LN++ + +GGK + Sbjct: 13 ALAVAFASHAYAQE-QKVVIGLTGPLSGANAFAGKDNENGVRLAIEDLNSKKITVGGKML 71 Query: 70 KFEIVAEDDQADPKSGVGVAQKLVDQGVKAIVGPYNSGVTIPASRVYNDAGIVTATVASN 129 KFE+ +EDDQ DP++GV VAQKLVD GVK ++GPY SGV +PASR+Y+ G + +TV +N Sbjct: 72 KFELQSEDDQCDPRAGVMVAQKLVDSGVKFVMGPYCSGVAVPASRLYSQGGAMLSTVGTN 131 Query: 130 PKITQQGFATLYRVAASDSQLGGKMALYAAKELKIKTVSVIDDRTAYGQGLAEEFIKLAQ 189 PK+TQ G+ L+R+ ASD+Q+G MA YAAK LK+K+V+VIDDRTA+GQG+AEEF K A+ Sbjct: 132 PKVTQGGYKNLFRIIASDNQIGASMAAYAAKVLKVKSVAVIDDRTAFGQGVAEEFTKEAK 191 Query: 190 ANGIKVVSKDFTNDKATDFTAILTSIKGKKPQAVFIGGYAPQGGPIKRQMKQLGIDALLM 249 G+ VV ++FT DKATDFTAILT++K KKP+A+F GGYAPQ GP+ RQ++QL I L+ Sbjct: 192 NLGLSVVGQEFTTDKATDFTAILTTLKAKKPEAIFFGGYAPQAGPLARQLQQLAIKTKLL 251 Query: 250 GGDGICSPEMGRLGGDAIGESVYCTQGGTILEKAKEGKAFADDYQKKFGRPAEVYAVSFY 309 GGD +CSPEMG+LGG+A+ + V+C QGG+IL+KA G F ++K+FG +VYA FY Sbjct: 252 GGDTLCSPEMGKLGGEAVNDVVFCAQGGSILDKAANGPTFKAKFKKRFGLDPDVYAAPFY 311 Query: 310 DGMMVIAQAMKAANSVEPKVYGPALAKIKYKGVAGQYEFDDKHDLKQSPVTIFRFKDGVP 369 D M I ++M+ ANS++P G + K YKG+AG Y +DDK ++KQ+P+T++ FK+ +P Sbjct: 312 DQTMFIGESMQKANSIDPNKVGAEIYKSTYKGIAGNYAYDDKGNMKQAPITVYTFKNALP 371 Query: 370 VALTSY 375 V L SY Sbjct: 372 VPLASY 377