BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0014.0001.p (336 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773609.1| proline racemase [Herbaspirillum seropedicae... 610 e-172 ref|YP_004754191.1| proline racemase [Collimonas fungivorans Ter... 571 e-161 ref|YP_003704518.1| proline racemase [Truepera radiovictrix DSM ... 417 e-114 ref|YP_001859545.1| proline racemase [Burkholderia phymatum STM8... 409 e-112 ref|YP_372418.1| proline racemase [Burkholderia sp. 383] >gi|779... 407 e-112 >ref|YP_003773609.1| proline racemase [Herbaspirillum seropedicae SmR1] gb|ADJ61701.1| proline racemase protein [Herbaspirillum seropedicae SmR1] Length = 336 Score = 610 bits (1573), Expect = e-172, Method: Compositional matrix adjust. Identities = 293/336 (87%), Positives = 310/336 (92%) Query: 1 MLSYTRTVQTIDAHTGGEPLRILVSGLPQVPGATILEKRTWLKENCDDLRQFLMNEPRGH 60 MLSYTRTVQTIDAHTGGEPLRI+VSGLP++P TILE+R WL+E+ DDLR FLMNEPRGH Sbjct: 1 MLSYTRTVQTIDAHTGGEPLRIVVSGLPKIPAGTILEQRAWLREHRDDLRCFLMNEPRGH 60 Query: 61 ADMYGAYLFPPLTPNADFGVIFIHNEGYSDMCGHGIIALGKVLVEMGYVERTSPVTRICF 120 ADMYGAYL PP+T ADFGVIFIHNEGYSDMCGHGIIALGKVLVEMGYVERTSP TRICF Sbjct: 61 ADMYGAYLLPPVTAGADFGVIFIHNEGYSDMCGHGIIALGKVLVEMGYVERTSPQTRICF 120 Query: 121 DAPAGFIDASVEWDGQRAGKVTFKNVPSFIYQRDVEVDTPGFGKITGDIVFGGAFYYYIN 180 DAPAGFI+A VEWDG+RAGKV+F NVP+FIY+RDVEVDTPGFGKITGDIVFGGAFYYYIN Sbjct: 121 DAPAGFIEAFVEWDGERAGKVSFNNVPAFIYRRDVEVDTPGFGKITGDIVFGGAFYYYIN 180 Query: 181 ADQAKLTVKPEQVRQLIQLGAETKAAVKAKVKIQHPLEPGLNTLYGTIIDSAPNFPGADQ 240 A QA LTVKPE VRQLIQLGAETKAAV AKV I HPLEPGLNTLYGTIIDSAPNFPGADQ Sbjct: 181 ATQAGLTVKPELVRQLIQLGAETKAAVMAKVAIAHPLEPGLNTLYGTIIDSAPNFPGADQ 240 Query: 241 SNVCIFADREVDRSPTGTGTSGRAAQLFLRGKLDLNQDYVNGSIVGSNFSVRVTGATKVG 300 SNVCIFADREVDRSPTGTGTSGRAAQLFLRG+L LNQ YVNGSIVGSNF VRVT AT+VG Sbjct: 241 SNVCIFADREVDRSPTGTGTSGRAAQLFLRGQLALNQPYVNGSIVGSNFGVRVTAATQVG 300 Query: 301 ELDAAFTEVTGSAHIMSTNQWVLEESDPFPTGFFLR 336 + A TEV+G AHIMSTNQWVLE+SDPFPTGFFLR Sbjct: 301 PFEGALTEVSGYAHIMSTNQWVLEQSDPFPTGFFLR 336 >ref|YP_004754191.1| proline racemase [Collimonas fungivorans Ter331] gb|AEK63368.1| proline racemase [Collimonas fungivorans Ter331] Length = 366 Score = 571 bits (1471), Expect = e-161, Method: Compositional matrix adjust. Identities = 274/336 (81%), Positives = 297/336 (88%) Query: 1 MLSYTRTVQTIDAHTGGEPLRILVSGLPQVPGATILEKRTWLKENCDDLRQFLMNEPRGH 60 MLSYTRT+ T+DAHTGGEPLRI++SGLP VPG TILE+R WLK DDLRQFLMNEPRGH Sbjct: 31 MLSYTRTIHTVDAHTGGEPLRIVISGLPPVPGKTILERRCWLKAQRDDLRQFLMNEPRGH 90 Query: 61 ADMYGAYLFPPLTPNADFGVIFIHNEGYSDMCGHGIIALGKVLVEMGYVERTSPVTRICF 120 ADMYGAYL PP+TP ADFGVIFIHNEGYSDMCGHGIIALGKVLVE+ +VER+ P+TRI F Sbjct: 91 ADMYGAYLLPPVTPAADFGVIFIHNEGYSDMCGHGIIALGKVLVELNHVERSMPLTRIGF 150 Query: 121 DAPAGFIDASVEWDGQRAGKVTFKNVPSFIYQRDVEVDTPGFGKITGDIVFGGAFYYYIN 180 D PAGFI+A VEWDGQRAG VTF+NVP+FIYQRDVEV+TP FGK+TGDIVFGGAFYYY+N Sbjct: 151 DTPAGFIEAQVEWDGQRAGAVTFRNVPAFIYQRDVEVETPSFGKVTGDIVFGGAFYYYMN 210 Query: 181 ADQAKLTVKPEQVRQLIQLGAETKAAVKAKVKIQHPLEPGLNTLYGTIIDSAPNFPGADQ 240 ADQA + +KPEQV LIQLGAETK AVK +VKIQHPLEPGL+TLYGTIID APN GADQ Sbjct: 211 ADQAGVKIKPEQVGSLIQLGAETKQAVKDQVKIQHPLEPGLDTLYGTIIDGAPNDAGADQ 270 Query: 241 SNVCIFADREVDRSPTGTGTSGRAAQLFLRGKLDLNQDYVNGSIVGSNFSVRVTGATKVG 300 +NVCIFADREVDRSPTGTGTSGRAAQLFLR KL LNQ VN SIVGS F VRVTG TKVG Sbjct: 271 ANVCIFADREVDRSPTGTGTSGRAAQLFLRQKLALNQVLVNESIVGSCFRVRVTGTTKVG 330 Query: 301 ELDAAFTEVTGSAHIMSTNQWVLEESDPFPTGFFLR 336 E DA TEVTG+AHIM NQWVLE+SDPFP GFFLR Sbjct: 331 EFDAVHTEVTGNAHIMGFNQWVLEDSDPFPQGFFLR 366 >ref|YP_003704518.1| proline racemase [Truepera radiovictrix DSM 17093] gb|ADI13975.1| proline racemase [Truepera radiovictrix DSM 17093] Length = 335 Score = 417 bits (1071), Expect = e-114, Method: Compositional matrix adjust. Identities = 197/335 (58%), Positives = 246/335 (73%) Query: 2 LSYTRTVQTIDAHTGGEPLRILVSGLPQVPGATILEKRTWLKENCDDLRQFLMNEPRGHA 61 + + RT TIDAHT GEPLRI+ +G+P +PGAT+LEKR W+++N D +R+ LM EPRGHA Sbjct: 1 MEFRRTYTTIDAHTAGEPLRIVTAGIPLIPGATMLEKRRWVRDNLDGVRRSLMWEPRGHA 60 Query: 62 DMYGAYLFPPLTPNADFGVIFIHNEGYSDMCGHGIIALGKVLVEMGYVERTSPVTRICFD 121 DMYG Y+ PP+TP ADFGVIF+HNEGYS MCGHGIIA+ V V G V +P TR+ D Sbjct: 61 DMYGCYVTPPVTPEADFGVIFMHNEGYSTMCGHGIIAVATVAVATGMVSAQTPETRVGID 120 Query: 122 APAGFIDASVEWDGQRAGKVTFKNVPSFIYQRDVEVDTPGFGKITGDIVFGGAFYYYINA 181 +PAGFI+A V WDG++A V F+NVPSF+Y RD+ V TP FG++T DI FGGAFY Y++ Sbjct: 121 SPAGFIEAFVAWDGRKASGVRFRNVPSFLYARDLTVVTPSFGELTLDIAFGGAFYAYLDG 180 Query: 182 DQAKLTVKPEQVRQLIQLGAETKAAVKAKVKIQHPLEPGLNTLYGTIIDSAPNFPGADQS 241 QA L V+PE R L+QLG E K AV+A +++ HP EP L LYGTII P G+DQ+ Sbjct: 181 AQAGLAVRPENTRALVQLGDEVKRAVEATLEVVHPEEPALRGLYGTIIGGPPRHEGSDQA 240 Query: 242 NVCIFADREVDRSPTGTGTSGRAAQLFLRGKLDLNQDYVNGSIVGSNFSVRVTGATKVGE 301 N+C+FADREVDRSPTGTGT+GR AQL+ RG+L L Q +VN SI+G+ F+ RV T VG+ Sbjct: 241 NICVFADREVDRSPTGTGTAGRMAQLYARGRLALGQTFVNESILGTVFTGRVLSETTVGD 300 Query: 302 LDAAFTEVTGSAHIMSTNQWVLEESDPFPTGFFLR 336 L A EV+GSAHI QWV+E D GF LR Sbjct: 301 LPAVVPEVSGSAHITGFCQWVVEPDDAVGEGFLLR 335 >ref|YP_001859545.1| proline racemase [Burkholderia phymatum STM815] gb|ACC72499.1| proline racemase [Burkholderia phymatum STM815] Length = 335 Score = 409 bits (1050), Expect = e-112, Method: Compositional matrix adjust. Identities = 188/335 (56%), Positives = 241/335 (71%) Query: 2 LSYTRTVQTIDAHTGGEPLRILVSGLPQVPGATILEKRTWLKENCDDLRQFLMNEPRGHA 61 + R + T++ HTGGEP RI+ SGLP++PG TI+E+R WLK++ D LR+ LM EPRGHA Sbjct: 1 MKLNRVISTVEVHTGGEPFRIVTSGLPRIPGKTIVERRAWLKQHADYLRRALMLEPRGHA 60 Query: 62 DMYGAYLFPPLTPNADFGVIFIHNEGYSDMCGHGIIALGKVLVEMGYVERTSPVTRICFD 121 DMYG YL P++ ADFG+IF+HNEGYSD CGHG+IAL V +G+VERT P TR+ D Sbjct: 61 DMYGGYLTDPVSEGADFGIIFVHNEGYSDHCGHGVIALATTAVALGWVERTEPETRVGID 120 Query: 122 APAGFIDASVEWDGQRAGKVTFKNVPSFIYQRDVEVDTPGFGKITGDIVFGGAFYYYINA 181 AP GFI+A V+WDG AG V F NVPSFI+QRDV V+TPGFG + GDI FGGAFY+Y + Sbjct: 121 APCGFIEAFVKWDGNHAGSVRFVNVPSFIWQRDVSVETPGFGTVLGDIAFGGAFYFYTSG 180 Query: 182 DQAKLTVKPEQVRQLIQLGAETKAAVKAKVKIQHPLEPGLNTLYGTIIDSAPNFPGADQS 241 L V+ QV +LIQ GAE K A A +++HPL P ++ +YGTIID+AP PG+ Q+ Sbjct: 181 APFGLDVREPQVDRLIQFGAEVKRAANAAFEVRHPLIPEIDHIYGTIIDNAPRHPGSTQA 240 Query: 242 NVCIFADREVDRSPTGTGTSGRAAQLFLRGKLDLNQDYVNGSIVGSNFSVRVTGATKVGE 301 N C+FADREVDRSPTG+GT+GR AQL+LRG+L ++ VN SI+G+ F RV TK+ Sbjct: 241 NCCVFADREVDRSPTGSGTAGRVAQLYLRGQLGKDETLVNESIIGTVFRGRVLSETKLDR 300 Query: 302 LDAAFTEVTGSAHIMSTNQWVLEESDPFPTGFFLR 336 DA E+ G AHI W+++E DP GF +R Sbjct: 301 FDAVIPEIEGDAHICGFANWIVDERDPLTYGFLVR 335 >ref|YP_372418.1| proline racemase [Burkholderia sp. 383] gb|ABB11774.1| proline racemase [Burkholderia sp. 383] Length = 335 Score = 407 bits (1047), Expect = e-112, Method: Compositional matrix adjust. Identities = 191/335 (57%), Positives = 242/335 (72%) Query: 2 LSYTRTVQTIDAHTGGEPLRILVSGLPQVPGATILEKRTWLKENCDDLRQFLMNEPRGHA 61 + TR++ T++ HTGGE RI+ SGLP++PG TI+++R WLKEN D++R+ LM EPRGHA Sbjct: 1 MKITRSLSTVEVHTGGEAFRIVTSGLPRLPGDTIVQRRAWLKENADEIRRALMFEPRGHA 60 Query: 62 DMYGAYLFPPLTPNADFGVIFIHNEGYSDMCGHGIIALGKVLVEMGYVERTSPVTRICFD 121 DMYG YL P++PNADFGVIF+HNEGYSD CGHG+IAL VE+G+V+RT P TR+ D Sbjct: 61 DMYGGYLTEPVSPNADFGVIFLHNEGYSDHCGHGVIALSTAAVELGWVQRTVPETRVGID 120 Query: 122 APAGFIDASVEWDGQRAGKVTFKNVPSFIYQRDVEVDTPGFGKITGDIVFGGAFYYYINA 181 AP GFI+A V+WDG+ AG V F NVPSFI+QRDV V+TP FG +TGDI +GGAFY+Y++ Sbjct: 121 APCGFIEAFVKWDGEHAGPVRFVNVPSFIWQRDVSVETPSFGTVTGDIAYGGAFYFYVDG 180 Query: 182 DQAKLTVKPEQVRQLIQLGAETKAAVKAKVKIQHPLEPGLNTLYGTIIDSAPNFPGADQS 241 L V+ V +LI+ GAE KAA AK + HP P +N +YGTII +AP PG+ Q+ Sbjct: 181 APFDLPVREAAVEKLIRFGAEVKAAANAKYPVVHPEIPEINHIYGTIIANAPRHPGSTQA 240 Query: 242 NVCIFADREVDRSPTGTGTSGRAAQLFLRGKLDLNQDYVNGSIVGSNFSVRVTGATKVGE 301 N C+FADREVDRSPTG+GT GR AQL+ RG L VN SIVG+ F RV T VG+ Sbjct: 241 NCCVFADREVDRSPTGSGTGGRVAQLYQRGLLAAGDTLVNESIVGTVFKGRVLRETTVGD 300 Query: 302 LDAAFTEVTGSAHIMSTNQWVLEESDPFPTGFFLR 336 + A EV GSAHI W+++E DP GF +R Sbjct: 301 IPAVIPEVEGSAHICGFANWIVDERDPLTYGFLVR 335