BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0269.p (342 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773753.1| AraC family transcription regulator protein ... 466 e-129 gb|EFV87711.1| AraC family Transcriptional regulator [Achromobac... 427 e-117 ref|YP_003980895.1| AraC family transcriptional regulator [Achro... 426 e-117 gb|EGP47992.1| AraC family regulatory helix-turn-helix protein 3... 423 e-116 ref|YP_002944700.1| AraC family transcriptional regulator [Vario... 386 e-105 >ref|YP_003773753.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ61845.1| AraC family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 338 Score = 466 bits (1198), Expect = e-129, Method: Compositional matrix adjust. Identities = 224/301 (74%), Positives = 261/301 (86%), Gaps = 2/301 (0%) Query: 44 RAAQRELVALIARLTEGAEGSLETGIEGFFLHRITNPQGPKHAVQKPVFAVIAQGAKRLF 103 +A Q+EL+ L+ T G EG LET I ++RIT P GPKHAVQKPVFAVIAQG+KR+F Sbjct: 38 QAMQQELLQLLEHYTTGVEGMLETAIPNMEIYRITCPSGPKHAVQKPVFAVIAQGSKRIF 97 Query: 104 VGDDIYDYDPMHYLVSSVDLPMVGKVTMSSPETPYLGLRIDLDTREIGSLIGDEHLPQG- 162 VGD+IY+YDPMHYLV+SVDLP+VGKV ++SP+ PYLGLR++LDT+EIG LIGDE+LP Sbjct: 98 VGDEIYEYDPMHYLVASVDLPVVGKVMVTSPDEPYLGLRLELDTQEIGELIGDENLPAAA 157 Query: 163 -IPSDASRGLFVNRLDITLLDAVLRLLRLLDTPRDIPILAPMVKREILYRLLMNGQGALL 221 + A+RGL+VNRLD+ LLDAVLRLLRL + P D+PILAPM++REILYRLLMNGQGALL Sbjct: 158 QVSEGAARGLYVNRLDVDLLDAVLRLLRLQERPADVPILAPMIRREILYRLLMNGQGALL 217 Query: 222 RQTVLQDSQMNRIAKAIRMMKESFAQPLRVDDIARDVHMSVSSLHHHFKVVTAMSPLQYQ 281 RQTVLQDSQMNR+AKAIR++KE + Q LR+DDIARDVHMSVSSLHHHFK+VTAMSPLQYQ Sbjct: 218 RQTVLQDSQMNRVAKAIRLIKEGYDQALRIDDIARDVHMSVSSLHHHFKLVTAMSPLQYQ 277 Query: 282 KNLRLQEARRLMLADDVSVATASQTVGYESPSQFSREYSRMFGAPPLRDKRRWLEEEAPA 341 KNLRLQEAR+L+L D SVATA+ VGYES SQFSREYSR+FGAPPLRDKRRW EEEAP Sbjct: 278 KNLRLQEARKLILTADASVATAAHRVGYESSSQFSREYSRLFGAPPLRDKRRWQEEEAPV 337 Query: 342 L 342 L Sbjct: 338 L 338 >gb|EFV87711.1| AraC family Transcriptional regulator [Achromobacter xylosoxidans C54] Length = 315 Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust. Identities = 204/292 (69%), Positives = 247/292 (84%) Query: 46 AQRELVALIARLTEGAEGSLETGIEGFFLHRITNPQGPKHAVQKPVFAVIAQGAKRLFVG 105 A+ EL+ L+ R+T EGSL+T IEG FLHRI+ P GPK A+QK AVIAQG+KR+ +G Sbjct: 19 ARHELLCLLERMTGTLEGSLDTPIEGLFLHRISQPTGPKPALQKAALAVIAQGSKRVLIG 78 Query: 106 DDIYDYDPMHYLVSSVDLPMVGKVTMSSPETPYLGLRIDLDTREIGSLIGDEHLPQGIPS 165 D+ Y+YDP HYL+SSVDLP+V KV+++SP PYLGLR+DL+ EI +LI DE+LP +P+ Sbjct: 79 DEAYEYDPFHYLISSVDLPVVAKVSVASPTLPYLGLRLDLNPEEITALISDENLPPLVPA 138 Query: 166 DASRGLFVNRLDITLLDAVLRLLRLLDTPRDIPILAPMVKREILYRLLMNGQGALLRQTV 225 +ASR + VN L TLLD +LRLLRLLDTPRDIPILAPMVKRE+LYRLLMNGQG +LRQTV Sbjct: 139 EASRAMCVNPLGGTLLDVMLRLLRLLDTPRDIPILAPMVKRELLYRLLMNGQGVVLRQTV 198 Query: 226 LQDSQMNRIAKAIRMMKESFAQPLRVDDIARDVHMSVSSLHHHFKVVTAMSPLQYQKNLR 285 LQDSQ+NR+AKAIR++++++A PLRV++IARDVHMSVSSLHHHFK TAMSPLQYQK+LR Sbjct: 199 LQDSQLNRVAKAIRILRDNYALPLRVEEIARDVHMSVSSLHHHFKQATAMSPLQYQKHLR 258 Query: 286 LQEARRLMLADDVSVATASQTVGYESPSQFSREYSRMFGAPPLRDKRRWLEE 337 LQEARRLML DD VA A+ VGYES SQFSREYSR+FG PPLRDK+RW +E Sbjct: 259 LQEARRLMLTDDAGVALAAHAVGYESSSQFSREYSRLFGTPPLRDKQRWKDE 310 >ref|YP_003980895.1| AraC family transcriptional regulator [Achromobacter xylosoxidans A8] gb|ADP18180.1| bacterial regulatory helix-turn-helix protein, AraC family protein 31 [Achromobacter xylosoxidans A8] Length = 320 Score = 426 bits (1096), Expect = e-117, Method: Compositional matrix adjust. Identities = 204/296 (68%), Positives = 248/296 (83%) Query: 46 AQRELVALIARLTEGAEGSLETGIEGFFLHRITNPQGPKHAVQKPVFAVIAQGAKRLFVG 105 A+REL+ + R+T EGSL+T IEG FLHR++ P G K +QK FAVIAQG+KRL +G Sbjct: 23 ARRELLCTLERMTGDLEGSLDTPIEGLFLHRLSQPTGAKPGLQKAAFAVIAQGSKRLLIG 82 Query: 106 DDIYDYDPMHYLVSSVDLPMVGKVTMSSPETPYLGLRIDLDTREIGSLIGDEHLPQGIPS 165 D+ Y+YDP HYL+SSV+LP+V KV+++SP PYLGLR+DL+ EI +LI DE+LP P+ Sbjct: 83 DEAYEYDPFHYLISSVELPVVAKVSVASPTLPYLGLRLDLNVEEITALISDENLPAQPPA 142 Query: 166 DASRGLFVNRLDITLLDAVLRLLRLLDTPRDIPILAPMVKREILYRLLMNGQGALLRQTV 225 +A R L VN L LLDAVLRLLRLLDTPRDIPILAP+VKRE+LYRLLMNGQG +LRQ+V Sbjct: 143 EAGRALCVNPLGSVLLDAVLRLLRLLDTPRDIPILAPLVKRELLYRLLMNGQGTVLRQSV 202 Query: 226 LQDSQMNRIAKAIRMMKESFAQPLRVDDIARDVHMSVSSLHHHFKVVTAMSPLQYQKNLR 285 LQDSQ+NR+AKAIR++++++AQPLRV++IARDVHMSVSSLHHHFK TAMSPLQYQK+LR Sbjct: 203 LQDSQLNRVAKAIRILRDNYAQPLRVEEIARDVHMSVSSLHHHFKQATAMSPLQYQKHLR 262 Query: 286 LQEARRLMLADDVSVATASQTVGYESPSQFSREYSRMFGAPPLRDKRRWLEEEAPA 341 LQEARRLML DD VA A+ VGYES SQFSREYSR+FG+PPLRDK+RW +E A A Sbjct: 263 LQEARRLMLTDDAGVALAAHAVGYESSSQFSREYSRLFGSPPLRDKQRWKDETALA 318 >gb|EGP47992.1| AraC family regulatory helix-turn-helix protein 31 [Achromobacter xylosoxidans AXX-A] Length = 311 Score = 423 bits (1088), Expect = e-116, Method: Compositional matrix adjust. Identities = 199/292 (68%), Positives = 246/292 (84%) Query: 46 AQRELVALIARLTEGAEGSLETGIEGFFLHRITNPQGPKHAVQKPVFAVIAQGAKRLFVG 105 A+ EL+ L+ R+T EGSL+T +EG +LHR++ P GPK +QK AVIAQG+KRL +G Sbjct: 15 ARHELLCLLERMTGTLEGSLDTPVEGLYLHRLSQPTGPKPGLQKAALAVIAQGSKRLLIG 74 Query: 106 DDIYDYDPMHYLVSSVDLPMVGKVTMSSPETPYLGLRIDLDTREIGSLIGDEHLPQGIPS 165 ++ Y+YDP HYL+SSVDLP+V KV+++SP PYLGLR+DL+ EI LI DE+LP +P+ Sbjct: 75 EETYEYDPFHYLISSVDLPVVAKVSVASPTLPYLGLRLDLNPEEITELISDENLPPLVPA 134 Query: 166 DASRGLFVNRLDITLLDAVLRLLRLLDTPRDIPILAPMVKREILYRLLMNGQGALLRQTV 225 ++SR L +N L TLLD +LRLLRLLDTPRDIPILAPM+KRE+LYRLLMNGQG +LRQTV Sbjct: 135 ESSRALCINPLGGTLLDVMLRLLRLLDTPRDIPILAPMIKRELLYRLLMNGQGVVLRQTV 194 Query: 226 LQDSQMNRIAKAIRMMKESFAQPLRVDDIARDVHMSVSSLHHHFKVVTAMSPLQYQKNLR 285 LQDSQ+NR+AKAIR++++++AQPLRV++IARDVHMSVSSLHHHFK TAMSPLQYQK+LR Sbjct: 195 LQDSQLNRVAKAIRILRDNYAQPLRVEEIARDVHMSVSSLHHHFKQATAMSPLQYQKHLR 254 Query: 286 LQEARRLMLADDVSVATASQTVGYESPSQFSREYSRMFGAPPLRDKRRWLEE 337 LQEARRLML DD VA A+ VGYES SQFSREYSR+FG PPLRDK+RW +E Sbjct: 255 LQEARRLMLTDDAGVALAAHAVGYESSSQFSREYSRLFGTPPLRDKQRWKDE 306 >ref|YP_002944700.1| AraC family transcriptional regulator [Variovorax paradoxus S110] gb|ACS19434.1| transcriptional regulator, AraC family [Variovorax paradoxus S110] Length = 330 Score = 386 bits (992), Expect = e-105, Method: Compositional matrix adjust. Identities = 181/292 (61%), Positives = 232/292 (79%) Query: 46 AQRELVALIARLTEGAEGSLETGIEGFFLHRITNPQGPKHAVQKPVFAVIAQGAKRLFVG 105 A++ELVALI R+T G +G++ET + G + I+ P GPKHA P +IAQG+KR+ VG Sbjct: 25 ARKELVALINRITRGQDGTVETPVAGLQVFCISKPDGPKHAFATPALGLIAQGSKRIIVG 84 Query: 106 DDIYDYDPMHYLVSSVDLPMVGKVTMSSPETPYLGLRIDLDTREIGSLIGDEHLPQGIPS 165 DDIY YDPMHYLV+SVDLP+ G+V ++S PYLG+R++L EIG LIGDE LP + Sbjct: 85 DDIYVYDPMHYLVTSVDLPVCGQVRLTSDNEPYLGVRLELAIDEIGKLIGDEKLPAKANA 144 Query: 166 DASRGLFVNRLDITLLDAVLRLLRLLDTPRDIPILAPMVKREILYRLLMNGQGALLRQTV 225 ASRG++VNR+ + +L+ VLRLLRL+++P D+PI+AP++KREI+YRLL+NG+GA LRQ Sbjct: 145 PASRGMYVNRIGMPVLEPVLRLLRLVESPEDVPIMAPLIKREIMYRLLVNGEGARLRQIA 204 Query: 226 LQDSQMNRIAKAIRMMKESFAQPLRVDDIARDVHMSVSSLHHHFKVVTAMSPLQYQKNLR 285 LQDS RIAKAI ++ +++Q LR++D+AR VHMSVSS HHHFK VTAMSPLQYQK LR Sbjct: 205 LQDSHTQRIAKAISALRINYSQSLRIEDMARAVHMSVSSFHHHFKAVTAMSPLQYQKQLR 264 Query: 286 LQEARRLMLADDVSVATASQTVGYESPSQFSREYSRMFGAPPLRDKRRWLEE 337 LQEARR ML V++A+ +VGYESPSQF+REYSRMFGAPPLRDKRRWL + Sbjct: 265 LQEARRQMLMAGADVSSAAHSVGYESPSQFAREYSRMFGAPPLRDKRRWLSD 316