BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0268.p (339 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773752.1| LysR family transcription regulator protein ... 598 e-169 ref|YP_545898.1| LysR family transcriptional regulator [Methylob... 520 e-145 gb|EGW60779.1| transcriptional regulator, LysR family [Dechloros... 498 e-139 ref|YP_934071.1| LysR family transcriptional regulator [Azoarcus... 485 e-135 ref|ZP_08504430.1| Uncharacterized HTH-type transcriptional regu... 462 e-128 >ref|YP_003773752.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] gb|ADJ61844.1| LysR family transcription regulator protein [Herbaspirillum seropedicae SmR1] Length = 337 Score = 598 bits (1543), Expect = e-169, Method: Compositional matrix adjust. Identities = 277/339 (81%), Positives = 309/339 (91%), Gaps = 2/339 (0%) Query: 1 MDRFQAMQVFSAVVDANSFTRAADNLNLPRTTVTTIVQGLESLLQVRLLNRTTRRISLTP 60 MDRFQAMQVF+AVVDANSFTRAADNLNLPRTTVTT+VQGLES+LQVRLLNRTTRRISLTP Sbjct: 1 MDRFQAMQVFTAVVDANSFTRAADNLNLPRTTVTTLVQGLESMLQVRLLNRTTRRISLTP 60 Query: 61 DGAAYYERCVRILAEVDETEASFRNVTRGPQGRLRIDVPASIGRLLLLPNLCDFYAKYPD 120 DGAAYYERCVRILA++DETE SFRNVTRGPQGRLRIDVPAS+GRL+LLPNLCDFY +YPD Sbjct: 61 DGAAYYERCVRILADLDETEQSFRNVTRGPQGRLRIDVPASVGRLMLLPNLCDFYTRYPD 120 Query: 121 IELVMGMSDRPVDMVQEAVDCVIRVGDLQDSSMVARRIGTFQAVTCGSPTYFERHGMPHT 180 IEL+MGM DRPVD+VQEAVDCVIR+G+LQDSSMVARRIGTFQ VTC +P Y ERHG+PHT Sbjct: 121 IELMMGMGDRPVDLVQEAVDCVIRIGELQDSSMVARRIGTFQTVTCAAPAYLERHGVPHT 180 Query: 181 IEDLQNHKSVHYFSSRTGRTIDWDFMVDGVAREVKMAGKLSVNDGDAYVACALQGFGLVQ 240 IEDLQ HK+VHYFSSRTGRTIDWDF+V+GV REVKM GKL+VN+ DAYV CALQGFG+VQ Sbjct: 181 IEDLQQHKAVHYFSSRTGRTIDWDFVVEGVTREVKMNGKLAVNEADAYVECALQGFGMVQ 240 Query: 241 APLYMIQPFLEDGRLVEILSQWKPVPMAISVVYLHNRHLSPKVRAFVDWVAELFATCPLQ 300 APLYM+ +++GRLVE+LSQWKP PM ISVVYLHNRHLSPKVRAFVDWVAELFATCPL Sbjct: 241 APLYMVTRHIDEGRLVEVLSQWKPAPMPISVVYLHNRHLSPKVRAFVDWVAELFATCPLH 300 Query: 301 KGCQMGIAADAKESHFTSKPESNTIRAVIEQHNIAESVF 339 K C MG+ + E F K E++T+R V+EQ+NIAESVF Sbjct: 301 KACTMGM--EESECRFVDKAETSTVRNVVEQYNIAESVF 337 >ref|YP_545898.1| LysR family transcriptional regulator [Methylobacillus flagellatus KT] gb|ABE50057.1| transcriptional regulator, LysR family [Methylobacillus flagellatus KT] Length = 338 Score = 520 bits (1339), Expect = e-145, Method: Compositional matrix adjust. Identities = 241/339 (71%), Positives = 284/339 (83%), Gaps = 2/339 (0%) Query: 1 MDRFQAMQVFSAVVDANSFTRAADNLNLPRTTVTTIVQGLESLLQVRLLNRTTRRISLTP 60 MDR QAMQVF+ VVDANSFTRAAD+L LPRTTVTT +Q LE LL VRLLNRTTRR+SLTP Sbjct: 2 MDRLQAMQVFTRVVDANSFTRAADSLGLPRTTVTTTIQALEGLLNVRLLNRTTRRLSLTP 61 Query: 61 DGAAYYERCVRILAEVDETEASFRNVTRGPQGRLRIDVPASIGRLLLLPNLCDFYAKYPD 120 DGAAYYERC+RILAEVDETEA FR+VTRGP GRLRIDVP SIGRL+++P LCDFY +YPD Sbjct: 62 DGAAYYERCMRILAEVDETEALFRDVTRGPSGRLRIDVPPSIGRLIIIPKLCDFYTRYPD 121 Query: 121 IELVMGMSDRPVDMVQEAVDCVIRVGDLQDSSMVARRIGTFQAVTCGSPTYFERHGMPHT 180 +ELV+GMSDRPVDMVQEAVDCV+RVGDLQDSSMVARRIGTF VTC +P Y +GMP T Sbjct: 122 VELVIGMSDRPVDMVQEAVDCVVRVGDLQDSSMVARRIGTFHIVTCAAPRYLAEYGMPGT 181 Query: 181 IEDLQNHKSVHYFSSRTGRTIDWDFMVDGVAREVKMAGKLSVNDGDAYVACALQGFGLVQ 240 ++DLQ+H +VHYFSSRTGR +DWDF+++G EVKMAG+++VND + YVACALQGFGL+Q Sbjct: 182 LDDLQHHHAVHYFSSRTGRNMDWDFVIEGKVTEVKMAGRVAVNDSEVYVACALQGFGLIQ 241 Query: 241 APLYMIQPFLEDGRLVEILSQWKPVPMAISVVYLHNRHLSPKVRAFVDWVAELFATCPLQ 300 AP YM+ P LE G LVE+L QW+P ISVVYLHNRHLSPKVRAFVDW+AELF +CPL Sbjct: 242 APRYMVLPQLESGELVEVLPQWQPSSHPISVVYLHNRHLSPKVRAFVDWIAELFGSCPLL 301 Query: 301 KGCQMGIAADAKESHFTSKPESNTIRAVIEQHNIAESVF 339 GC + + E F + NT+R +I+++N+AE+VF Sbjct: 302 GGCSSDMVEN--ECRFAQCEQGNTMRGIIDRNNVAEAVF 338 >gb|EGW60779.1| transcriptional regulator, LysR family [Dechlorosoma suillum PS] Length = 335 Score = 498 bits (1281), Expect = e-139, Method: Compositional matrix adjust. Identities = 235/339 (69%), Positives = 278/339 (82%), Gaps = 4/339 (1%) Query: 1 MDRFQAMQVFSAVVDANSFTRAADNLNLPRTTVTTIVQGLESLLQVRLLNRTTRRISLTP 60 MDRFQAMQVF+ VVDANSFTRAA+ L LPR TVTTI+Q LE+LLQVRLLNRTTRRISLTP Sbjct: 1 MDRFQAMQVFTRVVDANSFTRAAETLGLPRATVTTIIQNLEALLQVRLLNRTTRRISLTP 60 Query: 61 DGAAYYERCVRILAEVDETEASFRNVTRGPQGRLRIDVPASIGRLLLLPNLCDFYAKYPD 120 DGAAYYE C RILAEV+ETEASFR+ RGP+GRLRIDVP IGRL+L+P+LCDF ++YPD Sbjct: 61 DGAAYYEHCARILAEVEETEASFRDAARGPKGRLRIDVPPPIGRLILIPHLCDFSSRYPD 120 Query: 121 IELVMGMSDRPVDMVQEAVDCVIRVGDLQDSSMVARRIGTFQAVTCGSPTYFERHGMPHT 180 +ELV+GM DR VD+V+EAVDCVIRVG+LQDSS+VARRIGTFQ++TCG+P Y ER+G PH+ Sbjct: 121 VELVIGMGDRAVDLVREAVDCVIRVGELQDSSLVARRIGTFQSITCGAPDYLERYGTPHS 180 Query: 181 IEDLQNHKSVHYFSSRTGRTIDWDFMVDGVAREVKMAGKLSVNDGDAYVACALQGFGLVQ 240 I+DLQ H++VHYFS+RTGRTIDWDF+VDGV VKMAGK+SVND +AY+ CALQGFGL+Q Sbjct: 181 IDDLQQHQAVHYFSTRTGRTIDWDFIVDGVFTPVKMAGKVSVNDAEAYLDCALQGFGLIQ 240 Query: 241 APLYMIQPFLEDGRLVEILSQWKPVPMAISVVYLHNRHLSPKVRAFVDWVAELFATCPLQ 300 PL M P LE G L E+L P PM ISV YL NRHLSPKVRAFVDWVA+LF TCPL Sbjct: 241 LPLLMALPHLESGALKEVLPHLTPSPMPISVAYLQNRHLSPKVRAFVDWVADLFGTCPLL 300 Query: 301 KGCQMGIAADAKESHFTSKPESNTIRAVIEQHNIAESVF 339 G + + + F + P++ T+R ++EQ N AE Sbjct: 301 GGQR----ESSPQCSFPTHPDTLTLRDMLEQQNRAECTL 335 >ref|YP_934071.1| LysR family transcriptional regulator [Azoarcus sp. BH72] emb|CAL95184.1| putative LysR-family transcriptional regulator protein [Azoarcus sp. BH72] Length = 335 Score = 485 bits (1248), Expect = e-135, Method: Compositional matrix adjust. Identities = 230/339 (67%), Positives = 271/339 (79%), Gaps = 4/339 (1%) Query: 1 MDRFQAMQVFSAVVDANSFTRAADNLNLPRTTVTTIVQGLESLLQVRLLNRTTRRISLTP 60 MDRFQAMQVF+ VVDANSF+RAAD+L LPR TVT I+Q LE LLQVRLLNR+TRR+SLT Sbjct: 1 MDRFQAMQVFTRVVDANSFSRAADSLGLPRATVTNIIQNLERLLQVRLLNRSTRRLSLTQ 60 Query: 61 DGAAYYERCVRILAEVDETEASFRNVTRGPQGRLRIDVPASIGRLLLLPNLCDFYAKYPD 120 DGAAYYERCV ILA+V+ETE+SFR+ GP+GRLRIDVPAS+GRL+L+P LCDF+ +YP+ Sbjct: 61 DGAAYYERCVAILADVEETESSFRDAASGPRGRLRIDVPASLGRLVLIPRLCDFHTRYPE 120 Query: 121 IELVMGMSDRPVDMVQEAVDCVIRVGDLQDSSMVARRIGTFQAVTCGSPTYFERHGMPHT 180 +E+ +GM+DRPVDMV+EAVDC +RVG L DSS+VARRIGTF VTC +P+Y ERHG P T Sbjct: 121 LEIAIGMTDRPVDMVREAVDCALRVGHLPDSSLVARRIGTFFLVTCAAPSYLERHGEPRT 180 Query: 181 IEDLQNHKSVHYFSSRTGRTIDWDFMVDGVAREVKMAGKLSVNDGDAYVACALQGFGLVQ 240 I +L NH +V+YFSS GRT+DWDF+VDG EVKM G +SVNDGDAY+ACALQGFG+VQ Sbjct: 181 IAELANHSAVNYFSSLNGRTLDWDFVVDGHVTEVKMKGVVSVNDGDAYLACALQGFGMVQ 240 Query: 241 APLYMIQPFLEDGRLVEILSQWKPVPMAISVVYLHNRHLSPKVRAFVDWVAELFATCPLQ 300 P +M P LE G L E+L QW P PM IS VY NRHLSPKVRAFVDWVAELFA CPL Sbjct: 241 MPRFMALPHLESGALREVLPQWSPAPMPISAVYPANRHLSPKVRAFVDWVAELFAACPLL 300 Query: 301 KGCQMGIAADAKESHFTSKPESNTIRAVIEQHNIAESVF 339 G AA + KP NT+R+V+EQHN+AES Sbjct: 301 G----GTAAVDYCCSYEGKPAGNTLRSVVEQHNLAESAL 335 >ref|ZP_08504430.1| Uncharacterized HTH-type transcriptional regulator yhjC [Methyloversatilis universalis FAM5] gb|EGK72347.1| Uncharacterized HTH-type transcriptional regulator yhjC [Methyloversatilis universalis FAM5] Length = 332 Score = 462 bits (1189), Expect = e-128, Method: Compositional matrix adjust. Identities = 218/329 (66%), Positives = 261/329 (79%), Gaps = 4/329 (1%) Query: 1 MDRFQAMQVFSAVVDANSFTRAADNLNLPRTTVTTIVQGLESLLQVRLLNRTTRRISLTP 60 MDRFQAMQVF VVD+NSFTRAAD+L LPR TVTT VQ LE+LLQVRLLNRTTRRISLTP Sbjct: 1 MDRFQAMQVFVRVVDSNSFTRAADSLGLPRATVTTAVQQLENLLQVRLLNRTTRRISLTP 60 Query: 61 DGAAYYERCVRILAEVDETEASFRNVTRGPQGRLRIDVPASIGRLLLLPNLCDFYAKYPD 120 DGAAYYERC RILA+V+E E SFR V+RGP+G+LRIDVP IGRL+L+P +C+F+++YPD Sbjct: 61 DGAAYYERCARILADVEEAETSFREVSRGPRGKLRIDVPPPIGRLVLIPRMCEFHSRYPD 120 Query: 121 IELVMGMSDRPVDMVQEAVDCVIRVGDLQDSSMVARRIGTFQAVTCGSPTYFERHGMPHT 180 IEL +GM DRPVD+V+E+VDCVIRVG+LQDSS+V RRIGT + VTC SP Y +RHG P Sbjct: 121 IELAIGMGDRPVDLVRESVDCVIRVGELQDSSLVGRRIGTMETVTCASPDYIDRHGEPRV 180 Query: 181 IEDLQNHKSVHYFSSRTGRTIDWDFMVDGVAREVKMAGKLSVNDGDAYVACALQGFGLVQ 240 + DLQ+H++VHYFSSRTGR D DF+V+G EVK+ GK+SVND DAYVA LQGFGL+Q Sbjct: 181 LADLQHHRAVHYFSSRTGRIYDLDFVVEGEVTEVKVPGKVSVNDSDAYVASGLQGFGLIQ 240 Query: 241 APLYMIQPFLEDGRLVEILSQWKPVPMAISVVYLHNRHLSPKVRAFVDWVAELFATCPLQ 300 P +M+Q L+ G L E+L QW+P M ISVVY HNRHLSPKVRAFVDW AELF CP+ Sbjct: 241 PPRFMVQAHLQSGALREVLPQWRPSSMPISVVYPHNRHLSPKVRAFVDWAAELFGRCPIL 300 Query: 301 KGCQMGIAADAKESHFTSKPESNTIRAVI 329 GC+ + E F E + +AV+ Sbjct: 301 GGCE----GASTECSFVPGSEGHVRQAVL 325