BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0252.p (555 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003773744.1| HD-GYP domain-containing protein [Herbaspiri... 869 0.0 ref|ZP_04762665.1| metal dependent phosphohydrolase [Acidovorax ... 634 e-179 ref|ZP_08505395.1| hypothetical protein METUNv1_02457 [Methylove... 634 e-179 ref|YP_001475352.1| GAF containing protein [Shewanella sediminis... 633 e-179 ref|YP_003558248.1| GAF domain-containing protein [Shewanella vi... 625 e-177 >ref|YP_003773744.1| HD-GYP domain-containing protein [Herbaspirillum seropedicae SmR1] gb|ADJ61836.1| HD-GYP domain containing protein [Herbaspirillum seropedicae SmR1] Length = 552 Score = 869 bits (2245), Expect = 0.0, Method: Compositional matrix adjust. Identities = 415/539 (76%), Positives = 475/539 (88%), Gaps = 1/539 (0%) Query: 16 QHLDISHRLEKLTELSVELSTNRNIPLLLERILQTARSITLADGGTLYRTVEDEDSLAFY 75 +H +I++RLE+LTEL EL ++R+IPLLLERIL TA+ IT ADGGTLYR E DSL FY Sbjct: 12 RHRNIAYRLERLTELCRELGSSRDIPLLLERILLTAKDITQADGGTLYRINEGGDSLRFY 71 Query: 76 ISINDTLGMHQGGSSAQKISIPNIQLTSPDGSKNLSAVAAYAANTRKSVNIPDVYQ-AEG 134 IS+NDTL MHQGGSS + ISIP+I L PDG NLSAVAAYAANTRKSVNI DVYQ + G Sbjct: 72 ISVNDTLKMHQGGSSGKAISIPDIALRLPDGQPNLSAVAAYAANTRKSVNIADVYQVSSG 131 Query: 135 FNFSGMRMFDEKFGYHSQSFLTVPMQDHEGELVGVLQLVNAIDPATGKPHPFSETDQYFI 194 FNF+GMR+FDEK+GY S+SFLTVPM+DHEGELVGVLQL+NAIDPATG P PFSETDQ+FI Sbjct: 132 FNFNGMRLFDEKYGYQSKSFLTVPMEDHEGELVGVLQLINAIDPATGAPLPFSETDQHFI 191 Query: 195 EALASQAAIAITNQQLIYRLENLFEHFIKLINMGIDEKSPHTGRHCEHVPELAMMLAEAS 254 EALASQAA+A+TNQQLI RLE LFE I+LIN+GI EKSPHTGRHCE VPELAMMLAEA+ Sbjct: 192 EALASQAAMAMTNQQLIQRLEQLFESLIRLINIGIGEKSPHTGRHCEQVPELAMMLAEAA 251 Query: 255 HQATEGPLADFQMTERDRRELWVAGLLHDCGKITTPDHIVEKSTKLQTIYDRIHLVDTRY 314 H ATEGPLADF M+E DRRELW+A LLHDCGKI+TP HIVEK+TKL+TI+DRIHLV+TR Sbjct: 252 HNATEGPLADFHMSEADRRELWLAALLHDCGKISTPTHIVEKATKLETIFDRIHLVETRI 311 Query: 315 EVLKRDAEIRVLKEKCALGAALTAQKSAELDAALQGECEALDAERNFLRKSNVGGEGMKP 374 EVLKRDAEIRVL+EK ALGAAL AQ++AELDA L E LD ER FLRK NVG EGM+P Sbjct: 312 EVLKRDAEIRVLQEKLALGAALDAQRAAELDAGLAAELAQLDLERAFLRKINVGTEGMRP 371 Query: 375 DDQQRVLEIAKRQWRGPDGQMQDLLNADESGNLRIRAGTLNDAERQIINNHIVVTIKMLE 434 +DQQRVL+IA+R WRGPDGQ++ LL+ +ES NLRIRAGTLNDAERQIINNHIV+TIKMLE Sbjct: 372 EDQQRVLDIAQRSWRGPDGQLRPLLDEEESANLRIRAGTLNDAERQIINNHIVITIKMLE 431 Query: 435 SLPWPKQLRNVTEYAGGHHERMDGKGYPKGLTRDQMSPQARMMAIADIFEALTAADRPYK 494 SLPWPKQL VTE+AGGHHERMDGKGYPKGLTR+QMS QAR+MA+ADIFEA+TAADRPYK Sbjct: 432 SLPWPKQLARVTEFAGGHHERMDGKGYPKGLTREQMSVQARIMAVADIFEAVTAADRPYK 491 Query: 495 KGNTLSEALEILGGFRLRDHIDPDLFDVFVRSKVYQQYADKFMPASQIDVVDHSKIPGF 553 +GNTL+EA+EIL GF+ RDHIDPDLFD+FVR ++Y++YA+KFM SQID VD S+IPGF Sbjct: 492 RGNTLNEAVEILAGFKARDHIDPDLFDLFVRERIYEKYAEKFMHPSQIDEVDLSRIPGF 550 >ref|ZP_04762665.1| metal dependent phosphohydrolase [Acidovorax delafieldii 2AN] gb|EER60515.1| metal dependent phosphohydrolase [Acidovorax delafieldii 2AN] Length = 546 Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust. Identities = 315/535 (58%), Positives = 392/535 (73%), Gaps = 1/535 (0%) Query: 18 LDISHRLEKLTELSVELSTNRNIPLLLERILQTARSITLADGGTLYRTVEDEDSLAFYIS 77 L++ RLE+L + LS R+I LLE IL+ A++IT ADGGTLYR ED +L F I Sbjct: 7 LNLFRRLEQLNGIGAALSRERDIDRLLESILEAAKTITGADGGTLYRVTEDHSALRFEIV 66 Query: 78 INDTLGMHQGGSSAQKISIPNIQLTSPDGSKNLSAVAAYAANTRKSVNIPDVYQAEGFNF 137 D+LG+ GG++ + P++ L DG+ N S VAAYAA ++VNI D Y A+GF+F Sbjct: 67 RTDSLGIRLGGTAGRPTDFPDLPLRHADGTPNDSLVAAYAAIHDRTVNIADAYSAQGFDF 126 Query: 138 SGMRMFDEKFGYHSQSFLTVPMQDHEGELVGVLQLVNAIDPATGKPHPFSETDQYFIEAL 197 SG R FD++ GY SQSFLTVPM++H+ EL+GVLQL+NA D TG+ FSE DQ E+L Sbjct: 127 SGTRAFDQRTGYRSQSFLTVPMRNHDHELIGVLQLINATDGLTGQVCEFSEADQSLAESL 186 Query: 198 ASQAAIAITNQQLIYRLENLFEHFIKLINMGIDEKSPHTGRHCEHVPELAMMLAEASHQA 257 ASQAAIA++N+ LI +LE LFE F+ LIN+ IDEKSP+TG HC+ VP L MMLAEA+ Sbjct: 187 ASQAAIALSNRLLITQLERLFESFVNLINLAIDEKSPYTGGHCQRVPALTMMLAEAADAT 246 Query: 258 TEGPLADFQMTERDRRELWVAGLLHDCGKITTPDHIVEKSTKLQTIYDRIHLVDTRYEVL 317 T+GPLADF+MTERDR EL +AGLLHDCGKITTP H+V+K+TKLQT+YDRI L+DTR+EVL Sbjct: 247 TDGPLADFRMTERDRYELKMAGLLHDCGKITTPVHVVDKATKLQTLYDRIGLIDTRFEVL 306 Query: 318 KRDAEIRVLKEKCALGAALTAQKSAELDAALQGECEALDAERNFLRKSNVGGEGMKPDDQ 377 KRDAE+ L+ + AL A+ ALQ E AL+++R FLR+ N G E M+P+DQ Sbjct: 307 KRDAELAALRRQLALRPVADARAEMRELQALQHEMRALESDREFLRRCNTGSEAMQPEDQ 366 Query: 378 QRVLEIA-KRQWRGPDGQMQDLLNADESGNLRIRAGTLNDAERQIINNHIVVTIKMLESL 436 QRV +I +R+WR DG L A+E NL IR+GTL AER IN HIV TIKMLE+L Sbjct: 367 QRVRDIGTRREWRNVDGVQTHFLTAEELENLTIRSGTLTQAERDTINCHIVATIKMLETL 426 Query: 437 PWPKQLRNVTEYAGGHHERMDGKGYPKGLTRDQMSPQARMMAIADIFEALTAADRPYKKG 496 PWP+ L+NV EYAGGHHERMDGKGYP+GLTR+QMS QARMM IADIFEALTAADRPYK+G Sbjct: 427 PWPRHLKNVPEYAGGHHERMDGKGYPRGLTREQMSVQARMMGIADIFEALTAADRPYKRG 486 Query: 497 NTLSEALEILGGFRLRDHIDPDLFDVFVRSKVYQQYADKFMPASQIDVVDHSKIP 551 TLS+AL I+ R H+DPDLFDVFVR VY +YA +F+ Q+D V + P Sbjct: 487 MTLSQALAIMARMRDGGHVDPDLFDVFVREGVYLRYAREFLDPGQVDEVPVPRQP 541 >ref|ZP_08505395.1| hypothetical protein METUNv1_02457 [Methyloversatilis universalis FAM5] gb|EGK71071.1| hypothetical protein METUNv1_02457 [Methyloversatilis universalis FAM5] Length = 544 Score = 634 bits (1635), Expect = e-179, Method: Compositional matrix adjust. Identities = 315/537 (58%), Positives = 390/537 (72%), Gaps = 1/537 (0%) Query: 19 DISHRLEKLTELSVELSTNRNIPLLLERILQTARSITLADGGTLYRTVEDEDSLAFYISI 78 D+ RLE L E+ LS RNI LLE+IL A++IT ADGGTLYRT + L F I Sbjct: 6 DLLRRLEDLNEIGAALSNERNIDALLEKILLAAKAITHADGGTLYRTDDSGTHLRFEIMR 65 Query: 79 NDTLGMHQGGSSAQKISIPNIQLTSPDGSKNLSAVAAYAANTRKSVNIPDVYQAEGFNFS 138 D++G+ GG+S ++I P + L DG+ NLS VAAYAA R++VNI D Y AEGF+FS Sbjct: 66 TDSIGIAMGGTSGKRIVFPPLPLHLADGAPNLSMVAAYAALKRQTVNIADAYTAEGFDFS 125 Query: 139 GMRMFDEKFGYHSQSFLTVPMQDHEGELVGVLQLVNAIDPATGKPHPFSETDQYFIEALA 198 G R FD + GY S SFLTVPM +HEG ++GVLQL+NA+DP TG FS++D+ E+LA Sbjct: 126 GTRAFDARTGYRSTSFLTVPMMNHEGRVIGVLQLINALDPVTGAVGVFSDSDRKLAESLA 185 Query: 199 SQAAIAITNQQLIYRLENLFEHFIKLINMGIDEKSPHTGRHCEHVPELAMMLAEASHQAT 258 SQAAIA+TN+ L+ +LE LFE FI LIN IDEKSP+TG HC+ VP L MMLAEA + T Sbjct: 186 SQAAIALTNRLLVSQLEALFESFITLINNAIDEKSPYTGGHCQRVPTLTMMLAEAVNDTT 245 Query: 259 EGPLADFQMTERDRRELWVAGLLHDCGKITTPDHIVEKSTKLQTIYDRIHLVDTRYEVLK 318 EGPLADF M++ DR EL +AGLLHDCGK+TTP H+V+K+TKLQTI+DRI LVDTR+E+++ Sbjct: 246 EGPLADFTMSDADRYELKIAGLLHDCGKVTTPVHVVDKATKLQTIFDRIALVDTRFELIR 305 Query: 319 RDAEIRVLKEKCALGAALTAQKSAELDAALQGECEALDAERNFLRKSNVGGEGMKPDDQQ 378 RD E+ L+ + + G + A+++ + LDA+R FL +N+G E M D + Sbjct: 306 RDVELSALRSRVSAGPDASPVVLAQIERHGEDRLRELDADRAFLHHANIGSERMNDADVE 365 Query: 379 RVLEIAKR-QWRGPDGQMQDLLNADESGNLRIRAGTLNDAERQIINNHIVVTIKMLESLP 437 RV IA+R W GQ L+ DE NL IRAGTL AER++INNHIV TI+MLESLP Sbjct: 366 RVHAIARRWSWSDTLGQTHACLSDDEIENLTIRAGTLTGAEREVINNHIVSTIRMLESLP 425 Query: 438 WPKQLRNVTEYAGGHHERMDGKGYPKGLTRDQMSPQARMMAIADIFEALTAADRPYKKGN 497 WP+ L NV EYAGGHHERMDGKGYP+GLTRDQMS QAR+M IADIFEALTA DRPYK+ Sbjct: 426 WPRHLSNVPEYAGGHHERMDGKGYPRGLTRDQMSVQARVMGIADIFEALTAKDRPYKRPM 485 Query: 498 TLSEALEILGGFRLRDHIDPDLFDVFVRSKVYQQYADKFMPASQIDVVDHSKIPGFV 554 LSEAL ILG FRL HIDPDLFDVFVR +VY +YA+ F+ QID+VD S IPG++ Sbjct: 486 KLSEALHILGKFRLNGHIDPDLFDVFVRKQVYLRYAETFLDPEQIDMVDLSAIPGYL 542 >ref|YP_001475352.1| GAF containing protein [Shewanella sediminis HAW-EB3] gb|ABV38224.1| GAF containing protein [Shewanella sediminis HAW-EB3] Length = 540 Score = 633 bits (1633), Expect = e-179, Method: Compositional matrix adjust. Identities = 312/545 (57%), Positives = 397/545 (72%), Gaps = 8/545 (1%) Query: 10 MNNMKNQHLDISHRLEKLTELSVELSTNRNIPLLLERILQTARSITLADGGTLYRTVEDE 69 M+ + N+ I+ RL+ LT LS+ L+ +NI +LLERILQTA++IT ADGGTLYR D+ Sbjct: 1 MSELSNKQ--IAERLQHLTTLSIALNDIKNIEVLLERILQTAKNITHADGGTLYRVSADK 58 Query: 70 DSLAFYISINDTLGMHQGGSSAQKISIPNIQLTSPDGSKNLSAVAAYAANTRKSVNIPDV 129 L F I ND+L +H GG+ + + +I L+ + NL AV AYAAN ++SVNI V Sbjct: 59 KYLEFDILFNDSLDLHFGGTLEKSEQMRSIPLSLDNAEPNLEAVVAYAANRKESVNIEHV 118 Query: 130 YQAEGFNFSGMRMFDEKFGYHSQSFLTVPMQDHEGELVGVLQLVNAIDPATGKPHPFSET 189 Y FNF GMR FDE +GYH QS LTVPM DH ELVGVLQLVN+ P + + PFS T Sbjct: 119 YDTPLFNFLGMRKFDEFYGYHCQSLLTVPMLDHNSELVGVLQLVNSKAPFSHQVQPFSMT 178 Query: 190 DQYFIEALASQAAIAITNQQLIYRLENLFEHFIKLINMGIDEKSPHTGRHCEHVPELAMM 249 DQ FIEAL SQAAIAITNQ+LI +LE+L E + LIN+GIDEKSP+TGRHC+ VP+L MM Sbjct: 179 DQVFIEALTSQAAIAITNQELILQLEDLLESLVNLINIGIDEKSPNTGRHCQQVPKLTMM 238 Query: 250 LAEASHQATEGPLADFQMTERDRRELWVAGLLHDCGKITTPDHIVEKSTKLQTIYDRIHL 309 LA+A+ + EG L DF M+ +R ELW+AG+LHDCGKITTP H++EK+TKLQTI+DRIHL Sbjct: 239 LADAAQKTDEGALKDFAMSMSERYELWLAGMLHDCGKITTPVHVIEKATKLQTIFDRIHL 298 Query: 310 VDTRYEVLKRDAEIRVLKEKCALGAALTAQKSAELDAALQGECEALDAERNFLRKSNVGG 369 +D R+E+L+RD EI LK++ A G S L L+ + E + +R FL +N+G Sbjct: 299 IDARFEILRRDVEIHYLKQQAAQGP------SNRLSRELECKLERFEDDRTFLAYANIGS 352 Query: 370 EGMKPDDQQRVLEIAKRQWRGPDGQMQDLLNADESGNLRIRAGTLNDAERQIINNHIVVT 429 E MK +D QRV IA W G Q LLN +E NL I AGTL + ER+IINNHI +T Sbjct: 353 ERMKDEDLQRVASIANYTWVDQQGNTQTLLNEEEVENLMIPAGTLTNEERKIINNHISLT 412 Query: 430 IKMLESLPWPKQLRNVTEYAGGHHERMDGKGYPKGLTRDQMSPQARMMAIADIFEALTAA 489 I+MLE+LPWPK L+++ E+AGGHHERMDGKGYP+GL ++MS QAR+MAIADIFEALTA Sbjct: 413 IRMLETLPWPKHLQHIPEFAGGHHERMDGKGYPRGLRGEEMSVQARIMAIADIFEALTAK 472 Query: 490 DRPYKKGNTLSEALEILGGFRLRDHIDPDLFDVFVRSKVYQQYADKFMPASQIDVVDHSK 549 DRPYK G TLSE+L ILG F L HIDP+LF +FV+ KVY +YA++FM ++QID VD ++ Sbjct: 473 DRPYKTGKTLSESLRILGKFSLNGHIDPELFHIFVKQKVYLEYANQFMDSAQIDEVDETQ 532 Query: 550 IPGFV 554 IPG++ Sbjct: 533 IPGYL 537 >ref|YP_003558248.1| GAF domain-containing protein [Shewanella violacea DSS12] dbj|BAJ03470.1| GAF domain protein [Shewanella violacea DSS12] Length = 544 Score = 625 bits (1611), Expect = e-177, Method: Compositional matrix adjust. Identities = 318/547 (58%), Positives = 388/547 (70%), Gaps = 12/547 (2%) Query: 10 MNNMKNQHLDISHRLEKLTELSVELSTNRNIPLLLERILQTARSITLADGGTLYRTVEDE 69 M+ + N+ I RL+ LT LS+ L+ +NI LLERIL TAR+IT ADGGTLYR D+ Sbjct: 7 MSELSNKQ--IKERLQHLTTLSIALNDIKNIKFLLERILHTARTITNADGGTLYRVSSDK 64 Query: 70 DSLAFYISINDTLGMHQGGSSAQKISIPNIQLTSPDGSKNLSAVAAYAANTRKSVNIPDV 129 L F I IN +L +H GGS + + +I L +G NL AV AYAAN ++SVNI V Sbjct: 65 KYLEFDILINASLDLHFGGSREKSDKMRSIPLALDNGEPNLEAVVAYAANRKESVNIEHV 124 Query: 130 YQAEGFNFSGMRMFDEKFGYHSQSFLTVPMQDHEGELVGVLQLVNAIDPATGKPHPFSET 189 Y FNFSGMR FDE + YH QS L VPM DH ELVGVLQLVN++D ++G+ FS T Sbjct: 125 YDTPIFNFSGMRRFDEVYDYHCQSLLAVPMLDHNSELVGVLQLVNSMDNSSGEIQAFSTT 184 Query: 190 DQYFIEALASQAAIAITNQQLIYRLENLFEHFIKLINMGIDEKSPHTGRHCEHVPELAMM 249 DQ FIEAL+SQAAIAITNQ+LI +LE+L E + LIN+GIDEKS +TGRHC+ VP+L MM Sbjct: 185 DQLFIEALSSQAAIAITNQELILQLEDLLESLVNLINIGIDEKSANTGRHCQQVPKLTMM 244 Query: 250 LAEASHQATEGPLADFQMTERDRRELWVAGLLHDCGKITTPDHIVEKSTKLQTIYDRIHL 309 LA+A EGPL DF M+ +R ELW+AG+LHDCGKITTP H++EK+TKLQTI+DRI L Sbjct: 245 LADAVQSMEEGPLKDFSMSANERHELWLAGMLHDCGKITTPVHVIEKATKLQTIFDRIDL 304 Query: 310 VDTRYEVLKRDAEIRVLKEKCALGAALTAQKSA--ELDAALQGECEALDAERNFLRKSNV 367 +D R+E+L RDAEIR LK+ AQ S +L L E E+L ++R+FL +N+ Sbjct: 305 IDARFEILGRDAEIRYLKQ--------LAQDSISPQLTQELHLELESLRSDRDFLAHANI 356 Query: 368 GGEGMKPDDQQRVLEIAKRQWRGPDGQMQDLLNADESGNLRIRAGTLNDAERQIINNHIV 427 G E MK +D RV+ IA W G Q L +E NL+IR GTL ER+IINNHI Sbjct: 357 GCERMKDEDLDRVMSIASGTWVDYKGVTQAFLTDNEVENLQIRGGTLTGDERKIINNHIS 416 Query: 428 VTIKMLESLPWPKQLRNVTEYAGGHHERMDGKGYPKGLTRDQMSPQARMMAIADIFEALT 487 VTI+MLE+LPWP L+++ EYAGGHHERMDGKGYP+GL + MS QAR+MAIADIFEALT Sbjct: 417 VTIRMLETLPWPAHLQDIPEYAGGHHERMDGKGYPRGLRGEDMSVQARIMAIADIFEALT 476 Query: 488 AADRPYKKGNTLSEALEILGGFRLRDHIDPDLFDVFVRSKVYQQYADKFMPASQIDVVDH 547 A DRPYK G TLSE+L ILG F L HIDPDLF +FV KVY QYA K+M QID VD Sbjct: 477 ARDRPYKTGKTLSESLFILGKFSLNGHIDPDLFRIFVGKKVYLQYAHKYMHGVQIDEVDE 536 Query: 548 SKIPGFV 554 SKIPG++ Sbjct: 537 SKIPGYL 543