BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0249.p         (117 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003773742.1| hypothetical protein Hsero_0308 [Herbaspiril...    97   7e-19
ref|YP_984228.1| hypothetical protein Pnap_4015 [Polaromonas nap...    65   4e-09

>ref|YP_003773742.1| hypothetical protein Hsero_0308 [Herbaspirillum seropedicae SmR1]
 gb|ADJ61834.1| conserved hypothetical protein [Herbaspirillum seropedicae SmR1]
          Length = 254

 Score = 97.4 bits (241), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 51/92 (55%), Positives = 62/92 (67%)

Query: 26  AXCGGVPTPSGSTPANGLHVDVAQGAIVVANPAGQQVFQSGQFGYVASGTTPPVVVPPVR 85
           A CGG+PTPSG  PA+GLHVDVA GAI+V+N  G Q+F +GQFGYV+    PPVVVP   
Sbjct: 163 ADCGGIPTPSGQAPADGLHVDVASGAILVSNAGGAQLFNAGQFGYVSGPLQPPVVVPANI 222

Query: 86  GVPLLIPLSISRNAPPAAQQSAAGKEVDCVVQ 117
           GVP+ +P +IS N     Q+  A    DCVV 
Sbjct: 223 GVPVTMPPAISSNTNNGMQKLGAASAPDCVVH 254


>ref|YP_984228.1| hypothetical protein Pnap_4015 [Polaromonas naphthalenivorans CJ2]
 gb|ABM39307.1| hypothetical protein Pnap_4015 [Polaromonas naphthalenivorans CJ2]
          Length = 283

 Score = 65.1 bits (157), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 43/98 (43%), Positives = 54/98 (55%), Gaps = 6/98 (6%)

Query: 26  AXCGGVPT------PSGSTPANGLHVDVAQGAIVVANPAGQQVFQSGQFGYVASGTTPPV 79
           A   GVPT      P+  T A GLHV V  G I V+N  G Q F SGQFGY+ S TTPPV
Sbjct: 186 APTAGVPTSVTPSSPTSGTRAPGLHVFVTDGLISVSNAGGLQNFSSGQFGYIRSFTTPPV 245

Query: 80  VVPPVRGVPLLIPLSISRNAPPAAQQSAAGKEVDCVVQ 117
           V+P   G+P   P + + +   +A   A    +DCVV+
Sbjct: 246 VLPNNPGIPFSPPPAFTSSPSASAGTPANSNVIDCVVR 283