BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0242.p         (78 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_001355296.1| primosomal protein N' [Janthinobacterium sp....    94   8e-18
ref|YP_004755015.1| helicase PriA [Collimonas fungivorans Ter331...    92   3e-17
ref|YP_001101607.1| primosomal protein N' [Herminiimonas arsenic...    91   8e-17
ref|ZP_08275586.1| Helicase PriA essential for oriC/DnaA-indepen...    87   1e-15
ref|YP_003777732.1| primosomal protein N' [Herbaspirillum serope...    82   3e-14

>ref|YP_001355296.1| primosomal protein N' [Janthinobacterium sp. Marseille]
 gb|ABR88885.1| primosomal protein N' [Janthinobacterium sp. Marseille]
          Length = 683

 Score = 93.6 bits (231), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 44/58 (75%), Positives = 50/58 (86%)

Query: 1   LYGVTGSGKTEVYLQAAARILAQHEAAGEVAQVLVLVPEINLTPQLESNIRARFPGVW 58
           LYGVTGSGKTEVYLQAAA+ILA  +     AQ+L+LVPEINLTPQLE+N+RARFPGV 
Sbjct: 163 LYGVTGSGKTEVYLQAAAQILAHSKEDDNPAQILILVPEINLTPQLEANVRARFPGVM 220


>ref|YP_004755015.1| helicase PriA [Collimonas fungivorans Ter331]
 gb|AEK64192.1| Helicase PriA essential for oriC/DnaA-independent DNA replication
           [Collimonas fungivorans Ter331]
          Length = 680

 Score = 92.0 bits (227), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 46/59 (77%), Positives = 51/59 (86%), Gaps = 1/59 (1%)

Query: 1   LYGVTGSGKTEVYLQAAARILAQHE-AAGEVAQVLVLVPEINLTPQLESNIRARFPGVW 58
           LYGVTGSGKTEVYLQAAA+ILA+ E  A   +Q+L+LVPEINLTPQLE NIRARFPGV 
Sbjct: 163 LYGVTGSGKTEVYLQAAAQILARSENGADNPSQILILVPEINLTPQLEGNIRARFPGVM 221


>ref|YP_001101607.1| primosomal protein N' [Herminiimonas arsenicoxydans]
 emb|CAL63486.1| Primosomal protein N' [Herminiimonas arsenicoxydans]
          Length = 682

 Score = 90.5 bits (223), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 43/57 (75%), Positives = 48/57 (84%)

Query: 1   LYGVTGSGKTEVYLQAAARILAQHEAAGEVAQVLVLVPEINLTPQLESNIRARFPGV 57
           LYGVTGSGKTEVYLQAAA+ILA        AQ+L+LVPEINLTPQLE+N+RARFP V
Sbjct: 162 LYGVTGSGKTEVYLQAAAQILAHSSDEHNPAQILILVPEINLTPQLEANVRARFPDV 218


>ref|ZP_08275586.1| Helicase PriA essential for oriC/DnaA-independent DNA replication
           [Oxalobacteraceae bacterium IMCC9480]
 gb|EGF30946.1| Helicase PriA essential for oriC/DnaA-independent DNA replication
           [Oxalobacteraceae bacterium IMCC9480]
          Length = 650

 Score = 86.7 bits (213), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 41/58 (70%), Positives = 46/58 (79%)

Query: 1   LYGVTGSGKTEVYLQAAARILAQHEAAGEVAQVLVLVPEINLTPQLESNIRARFPGVW 58
           LYGVTGSGKTEVYL AAA +L+Q       AQ+L++VPEINLTPQLE NIRARFP V 
Sbjct: 134 LYGVTGSGKTEVYLHAAATVLSQANNLDNPAQILIMVPEINLTPQLEGNIRARFPTVM 191


>ref|YP_003777732.1| primosomal protein N' [Herbaspirillum seropedicae SmR1]
 gb|ADJ65824.1| primosomal protein N' (replication factor Y)- superfamily II
           helicase protein [Herbaspirillum seropedicae SmR1]
          Length = 708

 Score = 82.0 bits (201), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 45/55 (81%), Positives = 48/55 (87%)

Query: 1   LYGVTGSGKTEVYLQAAARILAQHEAAGEVAQVLVLVPEINLTPQLESNIRARFP 55
           LYGVTGSGKTEVYLQAAA IL +   +GE AQ+LVLVPEINLTPQLE NIRARFP
Sbjct: 192 LYGVTGSGKTEVYLQAAAAILRRAAESGERAQILVLVPEINLTPQLEGNIRARFP 246