BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0224.p (232 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004753275.1| winged helix family two component transcript... 324 8e-87 ref|YP_004491115.1| winged helix family two component transcript... 280 1e-73 ref|YP_001561777.1| two component transcriptional regulator [Del... 280 1e-73 ref|YP_559283.1| two component transcriptional regulator [Burkho... 271 7e-71 ref|ZP_03266225.1| two component transcriptional regulator, wing... 270 1e-70 >ref|YP_004753275.1| winged helix family two component transcriptional regulator [Collimonas fungivorans Ter331] gb|AEK62452.1| Two component Transcriptional regulator, winged helix family [Collimonas fungivorans Ter331] Length = 228 Score = 324 bits (830), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 161/221 (72%), Positives = 187/221 (84%) Query: 1 MNRIALLEDHERMAALIAKALAAAGIETDVYATIAHAAAGCTQMAYPVLVLDRSLPDGDG 60 MNRI LLEDHERMA LI +A+AA GIE DVY I HAA G ++ Y LV+DR LPDGDG Sbjct: 1 MNRIGLLEDHERMAQLIRQAMAAVGIEVDVYGRIDHAADGFARIPYAALVIDRGLPDGDG 60 Query: 61 LDLVRQLRARGVLTPCLMLTARDALHDRVAGLEAGADDYLPKPFSMEEMVARVRALMRRP 120 LDLVR+LRA+GVL PCLMLTA DALHDRVAGLEAGADDYLPKPFSMEE+VARVRALMRRP Sbjct: 61 LDLVRKLRAKGVLAPCLMLTALDALHDRVAGLEAGADDYLPKPFSMEELVARVRALMRRP 120 Query: 121 VQLQSLSPEFAGLRVEPEAACMRQGDESVSLAAAELQLMLALVRAAGKSVRRTALEAAAW 180 QLQ+ + GL+V PE++CMR GD+SVSLA +ELQLML+LVRA G+ VRRTALE AAW Sbjct: 121 PQLQNPVSVYLGLQVLPESSCMRNGDDSVSLAPSELQLMLSLVRAGGQPVRRTALEMAAW 180 Query: 181 GLSEPVTPNALDVALHRLRRKLAAIESPLQISNIRGHGYAL 221 G+ + VTPNALDVALHRLRRKL AI+S ++I+N+R +G+AL Sbjct: 181 GVGDAVTPNALDVALHRLRRKLLAIDSAIEIANVRAYGFAL 221 >ref|YP_004491115.1| winged helix family two component transcriptional regulator [Delftia sp. Cs1-4] gb|AEF92760.1| two component transcriptional regulator, winged helix family [Delftia sp. Cs1-4] Length = 228 Score = 280 bits (717), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 139/221 (62%), Positives = 172/221 (77%) Query: 1 MNRIALLEDHERMAALIAKALAAAGIETDVYATIAHAAAGCTQMAYPVLVLDRSLPDGDG 60 MNRIAL+EDH R+A L++++LA +GIETDV+ I+ A + Y V+V+DR LPDGDG Sbjct: 1 MNRIALIEDHARLATLVSRSLANSGIETDVFHQISTAWLALQDIDYGVIVIDRGLPDGDG 60 Query: 61 LDLVRQLRARGVLTPCLMLTARDALHDRVAGLEAGADDYLPKPFSMEEMVARVRALMRRP 120 L LV++LRA G TPCLMLTARDAL DRV GLEAGADDYL KPF MEE++ARVRAL+RRP Sbjct: 61 LQLVQRLRAAGRSTPCLMLTARDALSDRVGGLEAGADDYLTKPFPMEELIARVRALLRRP 120 Query: 121 VQLQSLSPEFAGLRVEPEAACMRQGDESVSLAAAELQLMLALVRAAGKSVRRTALEAAAW 180 +Q L+P+ + + P+ ACM +++L AELQ+ML+LVR AG +VRR+ LEAAAW Sbjct: 121 ALVQELAPQLGDISISPQQACMHCAGSAIALPPAELQIMLSLVRKAGATVRRSTLEAAAW 180 Query: 181 GLSEPVTPNALDVALHRLRRKLAAIESPLQISNIRGHGYAL 221 G+S VTPNALDVALHRLRRKLAA S ++I NIRG GYAL Sbjct: 181 GMSSVVTPNALDVALHRLRRKLAAAGSCMEIVNIRGQGYAL 221 >ref|YP_001561777.1| two component transcriptional regulator [Delftia acidovorans SPH-1] gb|ABX33392.1| two component transcriptional regulator, winged helix family [Delftia acidovorans SPH-1] Length = 256 Score = 280 bits (717), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 139/221 (62%), Positives = 172/221 (77%) Query: 1 MNRIALLEDHERMAALIAKALAAAGIETDVYATIAHAAAGCTQMAYPVLVLDRSLPDGDG 60 MNRIAL+EDH R+A L++++LA +GIETDV+ I+ A + Y V+V+DR LPDGDG Sbjct: 29 MNRIALIEDHARLATLVSRSLANSGIETDVFHQISTAWLALQDIDYGVIVIDRGLPDGDG 88 Query: 61 LDLVRQLRARGVLTPCLMLTARDALHDRVAGLEAGADDYLPKPFSMEEMVARVRALMRRP 120 L LV++LRA G TPCLMLTARDAL DRV GLEAGADDYL KPF MEE++ARVRAL+RRP Sbjct: 89 LQLVQRLRAAGRSTPCLMLTARDALSDRVGGLEAGADDYLTKPFPMEELIARVRALLRRP 148 Query: 121 VQLQSLSPEFAGLRVEPEAACMRQGDESVSLAAAELQLMLALVRAAGKSVRRTALEAAAW 180 +Q L+P+ + + P+ ACM +++L AELQ+ML+LVR AG +VRR+ LEAAAW Sbjct: 149 ALVQELAPQLGDISISPQQACMHCAGSAIALPPAELQIMLSLVRKAGATVRRSTLEAAAW 208 Query: 181 GLSEPVTPNALDVALHRLRRKLAAIESPLQISNIRGHGYAL 221 G+S VTPNALDVALHRLRRKLAA S ++I NIRG GYAL Sbjct: 209 GMSSVVTPNALDVALHRLRRKLAAAGSCMEIVNIRGQGYAL 249 >ref|YP_559283.1| two component transcriptional regulator [Burkholderia xenovorans LB400] gb|ABE31231.1| two component transcriptional regulator, winged helix family [Burkholderia xenovorans LB400] Length = 237 Score = 271 bits (692), Expect = 7e-71, Method: Compositional matrix adjust. Identities = 135/232 (58%), Positives = 173/232 (74%) Query: 1 MNRIALLEDHERMAALIAKALAAAGIETDVYATIAHAAAGCTQMAYPVLVLDRSLPDGDG 60 M+R+A++EDHER+A ++ +ALA G+E DV+ I+ A G ++ Y VL++DR LPDGDG Sbjct: 1 MSRVAIVEDHERLADMVGQALAGVGVEADVFRNISEATYGVSRADYAVLIVDRGLPDGDG 60 Query: 61 LDLVRQLRARGVLTPCLMLTARDALHDRVAGLEAGADDYLPKPFSMEEMVARVRALMRRP 120 L +R+LRA G +TPCLMLTARDALHDRV GLE+GADDY+ KPF+M E+VARVR LMRRP Sbjct: 61 LTFLRELRAAGRMTPCLMLTARDALHDRVDGLESGADDYVTKPFAMSELVARVRTLMRRP 120 Query: 121 VQLQSLSPEFAGLRVEPEAACMRQGDESVSLAAAELQLMLALVRAAGKSVRRTALEAAAW 180 V L +L +A + V+P MR G SV LA AELQ+ML LV A G++VR ALE AAW Sbjct: 121 VTLTTLVASYADVVVDPRQREMRCGVLSVLLAPAELQIMLCLVEAGGRTVRHLALEHAAW 180 Query: 181 GLSEPVTPNALDVALHRLRRKLAAIESPLQISNIRGHGYALLDNSKQEQLQS 232 GL E VTPNALDV +HRLR+KL AI + +++N+RG G+AL D + Q Q S Sbjct: 181 GLGEAVTPNALDVTVHRLRKKLLAINARARLTNLRGAGFALEDATAQRQQPS 232 >ref|ZP_03266225.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] gb|EEA02164.1| two component transcriptional regulator, winged helix family [Burkholderia sp. H160] Length = 243 Score = 270 bits (689), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 132/221 (59%), Positives = 172/221 (77%) Query: 1 MNRIALLEDHERMAALIAKALAAAGIETDVYATIAHAAAGCTQMAYPVLVLDRSLPDGDG 60 M+R+AL+EDH+R+AA++ +AL+ AGIETD+++T++ A G T+ Y VL++DR LPDGDG Sbjct: 1 MSRVALIEDHQRLAAMVRQALSVAGIETDLFSTVSEARYGVTRGDYAVLIIDRGLPDGDG 60 Query: 61 LDLVRQLRARGVLTPCLMLTARDALHDRVAGLEAGADDYLPKPFSMEEMVARVRALMRRP 120 L +R LRA G + PCLMLTARDALHDRV GLE+GADDY+ KPF+M E+VARVR LMRRP Sbjct: 61 LTFLRGLRAAGQMIPCLMLTARDALHDRVDGLESGADDYVTKPFAMNELVARVRTLMRRP 120 Query: 121 VQLQSLSPEFAGLRVEPEAACMRQGDESVSLAAAELQLMLALVRAAGKSVRRTALEAAAW 180 L L FA + V+P+ M G +V+LA AELQ+ML LV+AAG++VR ALE AAW Sbjct: 121 PVLAELVLSFADITVDPQQRAMHCGAGTVTLAQAELQIMLCLVKAAGRTVRHAALEHAAW 180 Query: 181 GLSEPVTPNALDVALHRLRRKLAAIESPLQISNIRGHGYAL 221 G+ E VTPNAL+V LHRLR+KL A+ S +++NIRG G+AL Sbjct: 181 GVGEAVTPNALEVTLHRLRKKLTALGSTTRLANIRGAGFAL 221