BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0205.p (305 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_003776038.1| branched-chain amino acid ABC transporter pe... 557 e-157 ref|YP_004753578.1| urea ABC transporter permease UrtB [Collimon... 550 e-154 ref|ZP_08276252.1| Urea ABC transporter, permease protein UrtB [... 541 e-152 gb|AEA83418.1| branched-chain amino acid ABC transporter, permea... 496 e-138 ref|YP_004355044.1| High-affinity branched-chain amino acid ABC ... 491 e-137 >ref|YP_003776038.1| branched-chain amino acid ABC transporter permease [Herbaspirillum seropedicae SmR1] gb|ADJ64130.1| ABC-type branched-chain amino acid transport system, permease component protein [Herbaspirillum seropedicae SmR1] Length = 293 Score = 557 bits (1436), Expect = e-157, Method: Compositional matrix adjust. Identities = 279/293 (95%), Positives = 288/293 (98%) Query: 13 MQGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYITYLLSHLTTTYAPSLQ 72 MQGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYITYLLSHLTTTYAP+LQ Sbjct: 1 MQGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYITYLLSHLTTTYAPALQ 60 Query: 73 PFYFFGAVVLSFIVAYGFGYLTELLLISRLYKRPLDTLLATWGLSLAMQQTFRSIFGAKE 132 PFYFF A+VLSF VAYG GYLTELLLISRLYKRPLDTLLATWGLSLAMQQTFRSIFGAKE Sbjct: 61 PFYFFVAIVLSFAVAYGVGYLTELLLISRLYKRPLDTLLATWGLSLAMQQTFRSIFGAKE 120 Query: 133 VSATLPDWLLGSFKPTENIDIPINGLFMMVLTLLLTGTIFILLFRSRWGLQVRATMQNRV 192 VSATLPDWL+GSFKPT++IDIP+NGLFMM LT+LLTG IF+LLFRSRWGLQVRATMQNRV Sbjct: 121 VSATLPDWLMGSFKPTDDIDIPLNGLFMMGLTVLLTGAIFVLLFRSRWGLQVRATMQNRV 180 Query: 193 MSGAVGINTRKVDRTTFALGCGVAGVAGAAFTTIGSTGPTSGSLYIVDTFLVVVFGGAQS 252 MSGAVGINTRKVDRTTFALGCGVAGVAGAAFTTIGSTGPTSGSLYIVDTFLVVVFGGAQS Sbjct: 181 MSGAVGINTRKVDRTTFALGCGVAGVAGAAFTTIGSTGPTSGSLYIVDTFLVVVFGGAQS 240 Query: 253 LIGTIASAFSIAQTQSTAEFFLTGSMAKVLTLSAVILILMLRPQGLFSVRVRK 305 LIGTIASAFSIAQTQSTAEFFLTGSMAKVLTLSAVILILMLRPQGLFSV+VRK Sbjct: 241 LIGTIASAFSIAQTQSTAEFFLTGSMAKVLTLSAVILILMLRPQGLFSVKVRK 293 >ref|YP_004753578.1| urea ABC transporter permease UrtB [Collimonas fungivorans Ter331] gb|AEK62755.1| Urea ABC transporter, permease protein UrtB [Collimonas fungivorans Ter331] Length = 310 Score = 550 bits (1416), Expect = e-154, Method: Compositional matrix adjust. Identities = 272/305 (89%), Positives = 292/305 (95%) Query: 1 MVSLSEFFAIFAMQGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYITYLL 60 +VSLSEF AIFAMQGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYITYLL Sbjct: 6 VVSLSEFGAIFAMQGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYITYLL 65 Query: 61 SHLTTTYAPSLQPFYFFGAVVLSFIVAYGFGYLTELLLISRLYKRPLDTLLATWGLSLAM 120 S LTT YAPSLQP+YFF A+ LSF+ AY GY+TE L+ISRLYKRPLDTLLATWGLSLAM Sbjct: 66 SKLTTLYAPSLQPYYFFAAIALSFVTAYIVGYITEWLMISRLYKRPLDTLLATWGLSLAM 125 Query: 121 QQTFRSIFGAKEVSATLPDWLLGSFKPTENIDIPINGLFMMVLTLLLTGTIFILLFRSRW 180 QQTFRSIFGAKEVSATLPDWL+GSFKPT++IDIPING+FMM LT +LTG IF+LLFRSRW Sbjct: 126 QQTFRSIFGAKEVSATLPDWLMGSFKPTDSIDIPINGVFMMALTAVLTGVIFLLLFRSRW 185 Query: 181 GLQVRATMQNRVMSGAVGINTRKVDRTTFALGCGVAGVAGAAFTTIGSTGPTSGSLYIVD 240 GLQVRATMQNR+MSGAVGINTRKVDR+TFALGCGVAG+AGAAFTTIGSTGPTSGSLYIVD Sbjct: 186 GLQVRATMQNRLMSGAVGINTRKVDRSTFALGCGVAGIAGAAFTTIGSTGPTSGSLYIVD 245 Query: 241 TFLVVVFGGAQSLIGTIASAFSIAQTQSTAEFFLTGSMAKVLTLSAVILILMLRPQGLFS 300 TFLVVVFGGAQSL+GTIASAFSIAQTQSTAEFFLTGSMAKVLTLSAVILIL+LRPQGLF+ Sbjct: 246 TFLVVVFGGAQSLLGTIASAFSIAQTQSTAEFFLTGSMAKVLTLSAVILILLLRPQGLFA 305 Query: 301 VRVRK 305 ++RK Sbjct: 306 AKIRK 310 >ref|ZP_08276252.1| Urea ABC transporter, permease protein UrtB [Oxalobacteraceae bacterium IMCC9480] gb|EGF30280.1| Urea ABC transporter, permease protein UrtB [Oxalobacteraceae bacterium IMCC9480] Length = 305 Score = 541 bits (1394), Expect = e-152, Method: Compositional matrix adjust. Identities = 271/305 (88%), Positives = 290/305 (95%) Query: 1 MVSLSEFFAIFAMQGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYITYLL 60 M LSEF AIFAMQGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAY+TYLL Sbjct: 1 MEWLSEFGAIFAMQGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYMTYLL 60 Query: 61 SHLTTTYAPSLQPFYFFGAVVLSFIVAYGFGYLTELLLISRLYKRPLDTLLATWGLSLAM 120 S LTT YAP+ QP+YFF A+VLSF+ AYG GYLTE L+ISRLYKRPLDTLLATWGLSL M Sbjct: 61 STLTTKYAPAFQPYYFFLAIVLSFLAAYGVGYLTERLMISRLYKRPLDTLLATWGLSLLM 120 Query: 121 QQTFRSIFGAKEVSATLPDWLLGSFKPTENIDIPINGLFMMVLTLLLTGTIFILLFRSRW 180 QQTFRSIFGAKEVSATLPDWL+GSFKPT++IDIPING FMM LT+++TG IF+LLFRSRW Sbjct: 121 QQTFRSIFGAKEVSATLPDWLMGSFKPTDSIDIPINGAFMMGLTVVMTGGIFLLLFRSRW 180 Query: 181 GLQVRATMQNRVMSGAVGINTRKVDRTTFALGCGVAGVAGAAFTTIGSTGPTSGSLYIVD 240 GLQVRATMQNR+MSGAVGINTRKVDRTTFALGCGVAGVAG+AFTTIGSTGPTSGSLYIVD Sbjct: 181 GLQVRATMQNRLMSGAVGINTRKVDRTTFALGCGVAGVAGSAFTTIGSTGPTSGSLYIVD 240 Query: 241 TFLVVVFGGAQSLIGTIASAFSIAQTQSTAEFFLTGSMAKVLTLSAVILILMLRPQGLFS 300 TFLVVVFGGAQSLIGTIASAFSIAQTQSTAEFFL+GSMAKVLTLSAVI+ILM+RPQGLFS Sbjct: 241 TFLVVVFGGAQSLIGTIASAFSIAQTQSTAEFFLSGSMAKVLTLSAVIVILMMRPQGLFS 300 Query: 301 VRVRK 305 +VRK Sbjct: 301 SKVRK 305 >gb|AEA83418.1| branched-chain amino acid ABC transporter, permease protein [Pseudomonas stutzeri DSM 4166] Length = 305 Score = 496 bits (1276), Expect = e-138, Method: Compositional matrix adjust. Identities = 248/305 (81%), Positives = 274/305 (89%) Query: 1 MVSLSEFFAIFAMQGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYITYLL 60 M LSEF AI AMQGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLT+GAY T+L+ Sbjct: 1 MEWLSEFGAIAAMQGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTVGAYTTFLV 60 Query: 61 SHLTTTYAPSLQPFYFFGAVVLSFIVAYGFGYLTELLLISRLYKRPLDTLLATWGLSLAM 120 S LT Y P+LQP+YFF A+VLSF++A G+L E LIS+LY RPLDTLLATWGLSL M Sbjct: 61 STLTLKYVPALQPYYFFVAIVLSFLIAGALGWLAEWALISKLYHRPLDTLLATWGLSLVM 120 Query: 121 QQTFRSIFGAKEVSATLPDWLLGSFKPTENIDIPINGLFMMVLTLLLTGTIFILLFRSRW 180 QQ FRSIFGA+EVSA++PDWL+GSF PT+ IDIP NGLF+M +TLLLT IF LL+RSRW Sbjct: 121 QQAFRSIFGAREVSASMPDWLMGSFNPTDAIDIPRNGLFVMAVTLLLTLAIFFLLYRSRW 180 Query: 181 GLQVRATMQNRVMSGAVGINTRKVDRTTFALGCGVAGVAGAAFTTIGSTGPTSGSLYIVD 240 GLQVRAT+QNRVM+ +VGINT+KVDR TFALGCGVAGVAGAAFTTIGSTGPTSGSLYIVD Sbjct: 181 GLQVRATVQNRVMARSVGINTKKVDRMTFALGCGVAGVAGAAFTTIGSTGPTSGSLYIVD 240 Query: 241 TFLVVVFGGAQSLIGTIASAFSIAQTQSTAEFFLTGSMAKVLTLSAVILILMLRPQGLFS 300 TFLVVVFGGA SL GTIASAFSIAQTQS AEFF++GSMAKVLTLSAVILILMLRPQGLFS Sbjct: 241 TFLVVVFGGAASLFGTIASAFSIAQTQSIAEFFISGSMAKVLTLSAVILILMLRPQGLFS 300 Query: 301 VRVRK 305 ++VRK Sbjct: 301 IKVRK 305 >ref|YP_004355044.1| High-affinity branched-chain amino acid ABC transporter permease [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA70040.1| putative High-affinity branched-chain amino acid ABC transporter, permease component [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 305 Score = 491 bits (1265), Expect = e-137, Method: Compositional matrix adjust. Identities = 249/305 (81%), Positives = 272/305 (89%) Query: 1 MVSLSEFFAIFAMQGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYITYLL 60 M LSEF AI AMQGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAY TY+ Sbjct: 1 MEWLSEFGAIAAMQGFNGLSVFCVLLLMALGLAIIFGQMGVINMAHGEFLTIGAYTTYVC 60 Query: 61 SHLTTTYAPSLQPFYFFGAVVLSFIVAYGFGYLTELLLISRLYKRPLDTLLATWGLSLAM 120 S LT+ + P QP+YFF A+ LSF+VA G+L E +ISRLYKRPLDTLLATWGLSL M Sbjct: 61 SSLTSHFTPWFQPYYFFIAIALSFLVAGAIGWLVEWAMISRLYKRPLDTLLATWGLSLVM 120 Query: 121 QQTFRSIFGAKEVSATLPDWLLGSFKPTENIDIPINGLFMMVLTLLLTGTIFILLFRSRW 180 QQTFRS+FGA+EVSAT P+WL+GSF TE+I+IP NGLFMM LTLLLTG IF+LL+RSRW Sbjct: 121 QQTFRSVFGAREVSATPPEWLMGSFNFTESIEIPRNGLFMMALTLLLTGAIFLLLYRSRW 180 Query: 181 GLQVRATMQNRVMSGAVGINTRKVDRTTFALGCGVAGVAGAAFTTIGSTGPTSGSLYIVD 240 GLQVRAT+QNR+MS AVGINTRKVDR TFALGCGVAGVAGAAFTTIGSTGPT+GS YIVD Sbjct: 181 GLQVRATVQNRLMSRAVGINTRKVDRMTFALGCGVAGVAGAAFTTIGSTGPTAGSQYIVD 240 Query: 241 TFLVVVFGGAQSLIGTIASAFSIAQTQSTAEFFLTGSMAKVLTLSAVILILMLRPQGLFS 300 TFLVVVFGGAQSL GTIASAF IAQTQS +EFFL+GSMAKVLTLS VILILMLRPQGLFS Sbjct: 241 TFLVVVFGGAQSLFGTIASAFVIAQTQSISEFFLSGSMAKVLTLSGVILILMLRPQGLFS 300 Query: 301 VRVRK 305 ++VRK Sbjct: 301 IKVRK 305