BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0195.p (269 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_004753267.1| glutamine transport system permease [Collimo... 338 4e-91 ref|ZP_06192373.1| transporter [Serratia odorifera 4Rx13] >gi|27... 296 2e-78 ref|YP_072430.1| ABC amino acid transporter, permease subunit [Y... 295 6e-78 ref|ZP_04641351.1| ABC-type amino acid transport system permease... 295 6e-78 ref|YP_001403105.1| polar amino acid ABC transporter permease [Y... 294 8e-78 >ref|YP_004753267.1| glutamine transport system permease [Collimonas fungivorans Ter331] gb|AEK62444.1| Glutamine transport system permease protein [Collimonas fungivorans Ter331] Length = 237 Score = 338 bits (868), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 173/223 (77%), Positives = 197/223 (88%) Query: 1 MEFAVLLDNLPYLLWGSYPDGPLGGAALTLLLSIGSALLSALLGVVFGVVLAMSSGAVRK 60 M+ +VL DNLPYLLWG+YPDGPLGGAALT+LLS+GSAL+SALLG+V G+ L+++ G + Sbjct: 3 MQLSVLTDNLPYLLWGAYPDGPLGGAALTVLLSVGSALVSALLGLVLGIALSLARGWPQL 62 Query: 61 LLTLALGFFRAIPVLMLIFWTYFLLPIAFGIDVPGVLSVMFALSLVSAAYLAHSVAAGIA 120 LLT+ LGFFRAIPVLMLIFWTYFLLPI F IDVPGVLSVM AL+L+ AYLAHSV AGI+ Sbjct: 63 LLTMVLGFFRAIPVLMLIFWTYFLLPIVFHIDVPGVLSVMCALALIGGAYLAHSVHAGIS 122 Query: 121 GIRSGQWDAGLSLGLPRLHVLRWIVLPQALQMMLPSFVNQWVTLIKDSSLAYIVGVGELS 180 GI++GQWDAGLSLG+PR+ VLR IVLPQALQMMLPSFVNQWVTLIKDSSLAYIVGVGELS Sbjct: 123 GIKAGQWDAGLSLGMPRVTVLRHIVLPQALQMMLPSFVNQWVTLIKDSSLAYIVGVGELS 182 Query: 181 FVASQVNSRLMIYPMEIFMFVGAIYFVLCSALEQFAAWVGRYF 223 FVA+QVNSR+MIYP EIFMF+G IYFVLCS L FA V +F Sbjct: 183 FVAAQVNSRVMIYPAEIFMFIGLIYFVLCSGLGLFANRVAAHF 225 >ref|ZP_06192373.1| transporter [Serratia odorifera 4Rx13] gb|EFA14852.1| transporter [Serratia odorifera 4Rx13] Length = 246 Score = 296 bits (758), Expect = 2e-78, Method: Compositional matrix adjust. Identities = 145/241 (60%), Positives = 187/241 (77%) Query: 1 MEFAVLLDNLPYLLWGSYPDGPLGGAALTLLLSIGSALLSALLGVVFGVVLAMSSGAVRK 60 M+F+V+ DNL YLLWG++PDGPLGGAALTL +S+ + + SA+LG + GV LAMS G Sbjct: 1 MDFSVIYDNLGYLLWGTWPDGPLGGAALTLAISLMAGVASAVLGTLLGVALAMSRGVAAG 60 Query: 61 LLTLALGFFRAIPVLMLIFWTYFLLPIAFGIDVPGVLSVMFALSLVSAAYLAHSVAAGIA 120 LL LGFFRAIPV+MLIFWTYFLLPI FG+D+P + +V+ AL+L+++AYLAH+V AGI Sbjct: 61 LLAAVLGFFRAIPVIMLIFWTYFLLPILFGVDIPEITTVVCALALIASAYLAHAVKAGIV 120 Query: 121 GIRSGQWDAGLSLGLPRLHVLRWIVLPQALQMMLPSFVNQWVTLIKDSSLAYIVGVGELS 180 I GQW AGLSLGL R LR IVLPQAL+MM+PSF+NQW++LIKD+SLAYIVGV EL+ Sbjct: 121 AIGPGQWQAGLSLGLTRWQTLRMIVLPQALRMMVPSFINQWISLIKDTSLAYIVGVSELT 180 Query: 181 FVASQVNSRLMIYPMEIFMFVGAIYFVLCSALEQFAAWVGRYFHPEAIAARHATHTLKKE 240 F+A+QVN+R M+YPME+F+FV +YFV C AL+ A V R P+A A + + + + Sbjct: 181 FLATQVNNRSMVYPMEVFLFVALVYFVFCLALDLLANAVNRRLSPQARALKRSWRWWRNK 240 Query: 241 P 241 P Sbjct: 241 P 241 >ref|YP_072430.1| ABC amino acid transporter, permease subunit [Yersinia pseudotuberculosis IP 32953] ref|YP_001722948.1| polar amino acid ABC transporter inner membrane subunit [Yersinia pseudotuberculosis YPIII] ref|YP_001874594.1| polar amino acid ABC transporter inner membrane subunit [Yersinia pseudotuberculosis PB1/+] emb|CAH23193.1| ABC amino acid transporter, permease subunit [Yersinia pseudotuberculosis IP 32953] gb|ACA70495.1| polar amino acid ABC transporter, inner membrane subunit [Yersinia pseudotuberculosis YPIII] gb|ACC91137.1| polar amino acid ABC transporter, inner membrane subunit [Yersinia pseudotuberculosis PB1/+] Length = 251 Score = 295 bits (754), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 143/252 (56%), Positives = 190/252 (75%), Gaps = 8/252 (3%) Query: 1 MEFAVLLDNLPYLLWGSYPDGPLGGAALTLLLSIGSALLSALLGVVFGVVLAMSSGAVRK 60 M+F +++DN YLLWG++PDGPLGGAALT+++SI + + SA+LG V GV LAMS G Sbjct: 1 MDFTIIVDNWRYLLWGTFPDGPLGGAALTVVISIMAGVTSAVLGTVLGVALAMSRGVWAG 60 Query: 61 LLTLALGFFRAIPVLMLIFWTYFLLPIAFGIDVPGVLSVMFALSLVSAAYLAHSVAAGIA 120 +L LGFFRAIPV+MLIFWTYFLLPI FG+D+P + +V+ AL+L+++AYLAH+V AGI Sbjct: 61 ILAAVLGFFRAIPVIMLIFWTYFLLPIVFGVDIPEITTVVCALALIASAYLAHAVKAGIM 120 Query: 121 GIRSGQWDAGLSLGLPRLHVLRWIVLPQALQMMLPSFVNQWVTLIKDSSLAYIVGVGELS 180 I +GQW AGLSLG R L +IVLPQAL+MM+PSF+NQW++LIKD+SLAYIVGV EL+ Sbjct: 121 AIGAGQWQAGLSLGFNRWQTLWFIVLPQALRMMVPSFINQWISLIKDTSLAYIVGVNELT 180 Query: 181 FVASQVNSRLMIYPMEIFMFVGAIYFVLCSALEQFAAWVGRYFHPEAIAARHATHTLKKE 240 F+A+QVN+R M+YPME+F+FV +YFVLC AL+ A + R F P+ H +KK+ Sbjct: 181 FLATQVNNRSMVYPMEVFLFVALVYFVLCLALDLLANGLNRRFSPQ--------HAIKKQ 232 Query: 241 PENXKDASGKCD 252 + C+ Sbjct: 233 SAMARSWRWWCN 244 >ref|ZP_04641351.1| ABC-type amino acid transport system permease component [Yersinia mollaretii ATCC 43969] gb|EEQ10099.1| ABC-type amino acid transport system permease component [Yersinia mollaretii ATCC 43969] Length = 254 Score = 295 bits (754), Expect = 6e-78, Method: Compositional matrix adjust. Identities = 143/240 (59%), Positives = 187/240 (77%), Gaps = 8/240 (3%) Query: 1 MEFAVLLDNLPYLLWGSYPDGPLGGAALTLLLSIGSALLSALLGVVFGVVLAMSSGAVRK 60 M+F ++ DN YLLWG+YPDGPLGGAALT+L+S+ + + SA+LG + GV LAMS G Sbjct: 1 MDFTIIADNWSYLLWGTYPDGPLGGAALTVLISLMAGVASAILGTILGVALAMSRGVWAG 60 Query: 61 LLTLALGFFRAIPVLMLIFWTYFLLPIAFGIDVPGVLSVMFALSLVSAAYLAHSVAAGIA 120 +L LGFFRAIPV+MLIFWTYFLLPI FG+D+P + +V+ AL+L+S+AYLAH+V AGI Sbjct: 61 ILAAVLGFFRAIPVIMLIFWTYFLLPIVFGVDIPEITTVVCALALISSAYLAHAVKAGIV 120 Query: 121 GIRSGQWDAGLSLGLPRLHVLRWIVLPQALQMMLPSFVNQWVTLIKDSSLAYIVGVGELS 180 I +GQW AGLSLG R VL ++VLPQAL+MM+PSF+NQW++LIKD+SLAYIVGV EL+ Sbjct: 121 AIGAGQWQAGLSLGFNRWQVLWFVVLPQALRMMVPSFINQWISLIKDTSLAYIVGVNELT 180 Query: 181 FVASQVNSRLMIYPMEIFMFVGAIYFVLCSALEQFAAWVGRYFHPEAIAARHATHTLKKE 240 F+A+QVN+R M+YPME+F+FV +YFVLC AL+ A + R F P+ H +KK+ Sbjct: 181 FLATQVNNRSMVYPMEVFLFVALVYFVLCLALDLLANGLNRRFSPQ--------HAIKKQ 232 >ref|YP_001403105.1| polar amino acid ABC transporter permease [Yersinia pseudotuberculosis IP 31758] gb|ABS47284.1| polar amino amino acid ABC transporter, PAAT family, permease protein [Yersinia pseudotuberculosis IP 31758] Length = 251 Score = 294 bits (753), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 143/252 (56%), Positives = 190/252 (75%), Gaps = 8/252 (3%) Query: 1 MEFAVLLDNLPYLLWGSYPDGPLGGAALTLLLSIGSALLSALLGVVFGVVLAMSSGAVRK 60 M+F +++DN YLLWG++PDGPLGGAALT+++SI + + SA+LG V GV LAMS G Sbjct: 1 MDFTIIVDNWRYLLWGTFPDGPLGGAALTVVISIMAGVASAVLGTVLGVALAMSRGVWAG 60 Query: 61 LLTLALGFFRAIPVLMLIFWTYFLLPIAFGIDVPGVLSVMFALSLVSAAYLAHSVAAGIA 120 +L LGFFRAIPV+MLIFWTYFLLPI FG+D+P + +V+ AL+L+++AYLAH+V AGI Sbjct: 61 ILAAVLGFFRAIPVIMLIFWTYFLLPIVFGVDIPEITTVVCALALIASAYLAHAVKAGIM 120 Query: 121 GIRSGQWDAGLSLGLPRLHVLRWIVLPQALQMMLPSFVNQWVTLIKDSSLAYIVGVGELS 180 I +GQW AGLSLG R L +IVLPQAL+MM+PSF+NQW++LIKD+SLAYIVGV EL+ Sbjct: 121 AIGAGQWQAGLSLGFNRWQTLWFIVLPQALRMMVPSFINQWISLIKDTSLAYIVGVNELT 180 Query: 181 FVASQVNSRLMIYPMEIFMFVGAIYFVLCSALEQFAAWVGRYFHPEAIAARHATHTLKKE 240 F+A+QVN+R M+YPME+F+FV +YFVLC AL+ A + R F P+ H +KK+ Sbjct: 181 FLATQVNNRSMVYPMEVFLFVALVYFVLCLALDLLANGLNRRFSPQ--------HAIKKQ 232 Query: 241 PENXKDASGKCD 252 + C+ Sbjct: 233 SAMARSWRWWCN 244