BLASTP 2.2.21 [Jun-14-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0013.0183.p (275 letters) Database: All non-redundant GenBank CDS translations+PDB+SwissProt+PIR+PRF excluding environmental samples from WGS projects 15,459,386 sequences; 5,307,515,862 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|YP_002872902.1| hypothetical protein PFLU3331 [Pseudomonas f... 424 e-117 ref|YP_004353479.1| hypothetical protein PSEBR_a2203 [Pseudomona... 422 e-116 ref|ZP_07775264.1| protein of unknown function DUF6, transmembra... 418 e-115 ref|YP_004215353.1| hypothetical protein Rahaq_4646 [Rahnella sp... 373 e-101 ref|ZP_06639721.1| integral membrane protein [Serratia odorifera... 364 1e-98 >ref|YP_002872902.1| hypothetical protein PFLU3331 [Pseudomonas fluorescens SBW25] emb|CAY49557.1| putative membrane protein [Pseudomonas fluorescens SBW25] Length = 275 Score = 424 bits (1090), Expect = e-117, Method: Compositional matrix adjust. Identities = 218/275 (79%), Positives = 236/275 (85%) Query: 1 MPFHIVALILFAALLHASWNALLRGGADRLWSMTVMCLAVALASLAIALFLAPPAQASWM 60 MPF IV LILFAALLHASWNALLR G DRLWSMTVMCLAVA+AS IALFL PPA ASW Sbjct: 1 MPFPIVLLILFAALLHASWNALLRAGTDRLWSMTVMCLAVAVASTVIALFLTPPAAASWP 60 Query: 61 YAVLSAVLHVGYNLFLVRSYRAGDLGQTYPISRGSSPLLITIAASAFAGERVAMSALLGI 120 YAVLS VLHVGYNLFLVRSY+ GDLGQTYPI+RGSSP+LIT+ A AFA E V AL+GI Sbjct: 61 YAVLSGVLHVGYNLFLVRSYKVGDLGQTYPIARGSSPILITLFAFAFAEETVNAGALIGI 120 Query: 121 ALVAGGIISLAFNGRKLAVPSLPYALGTGCFIAAYSVVDGIGVRLSGAPMAYTVWMCALW 180 LV+ GIISL F R+LAVPSLPYALGTG FIAAYSV DGIG RLS AP+AYT WMCALW Sbjct: 121 VLVSAGIISLTFKQRRLAVPSLPYALGTGVFIAAYSVTDGIGARLSDAPLAYTAWMCALW 180 Query: 181 GVLMPAVYIGLRGANHLFTMRPGFSTAFMGGLVSLLAYGIVIYAMSGAPMGAVSALRETS 240 G++MP VY+GLRG L T RPG TAF+GGLVSLLAYGIVIYAMS APMGAVSALRETS Sbjct: 181 GIMMPLVYVGLRGTRSLLTPRPGCITAFLGGLVSLLAYGIVIYAMSEAPMGAVSALRETS 240 Query: 241 VLFAALIGYFFLGETLTVRKMLACAVIAAGTIIIG 275 V+FAALIGY+FLGE+LTVRK+LAC VIA GTI+IG Sbjct: 241 VVFAALIGYYFLGESLTVRKVLACVVIATGTILIG 275 >ref|YP_004353479.1| hypothetical protein PSEBR_a2203 [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gb|AEA68475.1| Conserved hypothetical protein; putative membrane protein [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 275 Score = 422 bits (1086), Expect = e-116, Method: Compositional matrix adjust. Identities = 211/275 (76%), Positives = 241/275 (87%) Query: 1 MPFHIVALILFAALLHASWNALLRGGADRLWSMTVMCLAVALASLAIALFLAPPAQASWM 60 MP HI+ L+LFAALLHASWNA+LRGGADRLWSMT+MC+A+ALASL +A L PPA+ASW Sbjct: 1 MPLHIICLVLFAALLHASWNAMLRGGADRLWSMTIMCMAIALASLIVATLLPPPARASWF 60 Query: 61 YAVLSAVLHVGYNLFLVRSYRAGDLGQTYPISRGSSPLLITIAASAFAGERVAMSALLGI 120 LSAVLHVGYNLFLVRSY++GDLGQTYPI+RG SP+LI +AAS FAGERV+ S LLG+ Sbjct: 61 CVGLSAVLHVGYNLFLVRSYKSGDLGQTYPIARGVSPILIVLAASVFAGERVSPSGLLGV 120 Query: 121 ALVAGGIISLAFNGRKLAVPSLPYALGTGCFIAAYSVVDGIGVRLSGAPMAYTVWMCALW 180 ALV+ GIISLA+ GR+ A+P LPYALGTGCFIAAYSVVDGIGVRLSGAP+AYT WMC LW Sbjct: 121 ALVSTGIISLAYTGRRRALPDLPYALGTGCFIAAYSVVDGIGVRLSGAPLAYTAWMCLLW 180 Query: 181 GVLMPAVYIGLRGANHLFTMRPGFSTAFMGGLVSLLAYGIVIYAMSGAPMGAVSALRETS 240 GV+MP VYIGLR A LF +RPG + A GGLVSLLAYG+VIYAM+ APMGAVSALRETS Sbjct: 181 GVMMPVVYIGLRDAKSLFALRPGIAVASAGGLVSLLAYGVVIYAMAHAPMGAVSALRETS 240 Query: 241 VLFAALIGYFFLGETLTVRKMLACAVIAAGTIIIG 275 V+FAALIGY FLGE LT+RK+LACAVIA GT++IG Sbjct: 241 VMFAALIGYAFLGEALTLRKLLACAVIALGTLVIG 275 >ref|ZP_07775264.1| protein of unknown function DUF6, transmembrane [Pseudomonas fluorescens WH6] gb|EFQ62993.1| protein of unknown function DUF6, transmembrane [Pseudomonas fluorescens WH6] Length = 275 Score = 418 bits (1074), Expect = e-115, Method: Compositional matrix adjust. Identities = 211/275 (76%), Positives = 239/275 (86%) Query: 1 MPFHIVALILFAALLHASWNALLRGGADRLWSMTVMCLAVALASLAIALFLAPPAQASWM 60 MP H+V L+LFAALLHASWNALLRGGADRLWSMTVMC+A+A+ + A F+ PA SW Sbjct: 1 MPIHLVVLVLFAALLHASWNALLRGGADRLWSMTVMCIAIAVTCVLAATFMVRPAPESWG 60 Query: 61 YAVLSAVLHVGYNLFLVRSYRAGDLGQTYPISRGSSPLLITIAASAFAGERVAMSALLGI 120 YA+LS +LHVGYNLFLVRSYR GDLGQ YPISRGSSP+LIT+ A+AFAGER+A LLGI Sbjct: 61 YALLSGLLHVGYNLFLVRSYRVGDLGQIYPISRGSSPVLITLGAAAFAGERIAPGELLGI 120 Query: 121 ALVAGGIISLAFNGRKLAVPSLPYALGTGCFIAAYSVVDGIGVRLSGAPMAYTVWMCALW 180 ALV+GGIISLAF GR L+VPSLP+ALGTG FIAAYSVVDGIG RLSGAP+AYTVWMCALW Sbjct: 121 ALVSGGIISLAFRGRSLSVPSLPFALGTGVFIAAYSVVDGIGARLSGAPLAYTVWMCALW 180 Query: 181 GVLMPAVYIGLRGANHLFTMRPGFSTAFMGGLVSLLAYGIVIYAMSGAPMGAVSALRETS 240 GVLMP VYIGLR A LF +RPG +A +GGLVSLLAYG+VIYAM+ AP+GAVSALRETS Sbjct: 181 GVLMPVVYIGLRDARSLFCVRPGAVSAVVGGLVSLLAYGVVIYAMNEAPLGAVSALRETS 240 Query: 241 VLFAALIGYFFLGETLTVRKMLACAVIAAGTIIIG 275 VLFA LIGY FLGETLTVR++LAC VI +GT++IG Sbjct: 241 VLFAVLIGYLFLGETLTVRRILACVVIVSGTLLIG 275 >ref|YP_004215353.1| hypothetical protein Rahaq_4646 [Rahnella sp. Y9602] gb|ADW76226.1| protein of unknown function DUF6 transmembrane [Rahnella sp. Y9602] Length = 275 Score = 373 bits (957), Expect = e-101, Method: Compositional matrix adjust. Identities = 190/275 (69%), Positives = 223/275 (81%) Query: 1 MPFHIVALILFAALLHASWNALLRGGADRLWSMTVMCLAVALASLAIALFLAPPAQASWM 60 MP HI+ L LFAALLHASWNALLR G DRLWSMT+MC+ +A+ IALFL P AS Sbjct: 1 MPAHIIFLTLFAALLHASWNALLRSGTDRLWSMTIMCVTIAVTCGVIALFLPLPDFASAK 60 Query: 61 YAVLSAVLHVGYNLFLVRSYRAGDLGQTYPISRGSSPLLITIAASAFAGERVAMSALLGI 120 YAVLSA+LHVGYNL L+RSY++GDLGQTYPI+RGSSPL++T A+ FAGE++A + L+GI Sbjct: 61 YAVLSALLHVGYNLCLIRSYQSGDLGQTYPIARGSSPLMVTCGAALFAGEKIAFNTLVGI 120 Query: 121 ALVAGGIISLAFNGRKLAVPSLPYALGTGCFIAAYSVVDGIGVRLSGAPMAYTVWMCALW 180 AL++GGI+ LA RKLA+P L Y L TG FIAAYSVVDGIGVR+SG +YTVWM LW Sbjct: 121 ALISGGILMLAMRSRKLAIPGLKYPLATGAFIAAYSVVDGIGVRVSGNSFSYTVWMSMLW 180 Query: 181 GVLMPAVYIGLRGANHLFTMRPGFSTAFMGGLVSLLAYGIVIYAMSGAPMGAVSALRETS 240 GVLMPA+YI LR L RPG +A GG+VSLLAYG++IYAM APMGAVSALRETS Sbjct: 181 GVLMPALYIALRDTKSLLRWRPGLLSAAAGGVVSLLAYGMIIYAMVAAPMGAVSALRETS 240 Query: 241 VLFAALIGYFFLGETLTVRKMLACAVIAAGTIIIG 275 VLFAA++GY FLGETLT+RKMLACAVIA GT++IG Sbjct: 241 VLFAAVLGYLFLGETLTLRKMLACAVIATGTLLIG 275 >ref|ZP_06639721.1| integral membrane protein [Serratia odorifera DSM 4582] gb|EFE95366.1| integral membrane protein [Serratia odorifera DSM 4582] Length = 275 Score = 364 bits (934), Expect = 1e-98, Method: Compositional matrix adjust. Identities = 190/276 (68%), Positives = 224/276 (81%), Gaps = 2/276 (0%) Query: 1 MPFHIVALILFAALLHASWNALLRGGADRLWSMTVMCLAVALASLAIAL-FLAPPAQASW 59 MP HI+ L LFAALLHASWN LLRGG DRLWSMT+MCLA+A+ S A+A+ FL PA ASW Sbjct: 1 MPNHIILLTLFAALLHASWNTLLRGGTDRLWSMTIMCLAIAV-SCALAMPFLPLPASASW 59 Query: 60 MYAVLSAVLHVGYNLFLVRSYRAGDLGQTYPISRGSSPLLITIAASAFAGERVAMSALLG 119 YA+LSA+LHVGYNL L+RSY +G+LGQTYPI+RGS+PLL+T AA+ AGE++ ++ L G Sbjct: 60 RYALLSALLHVGYNLCLIRSYHSGELGQTYPIARGSAPLLVTCAAALLAGEQIELNTLGG 119 Query: 120 IALVAGGIISLAFNGRKLAVPSLPYALGTGCFIAAYSVVDGIGVRLSGAPMAYTVWMCAL 179 IALV GI+ LAF GRKL P++ YAL TG FIAAYSVVDGIGVRLSG ++YTVWM AL Sbjct: 120 IALVCVGILLLAFRGRKLTRPTVQYALATGVFIAAYSVVDGIGVRLSGNALSYTVWMSAL 179 Query: 180 WGVLMPAVYIGLRGANHLFTMRPGFSTAFMGGLVSLLAYGIVIYAMSGAPMGAVSALRET 239 WG+LMPA+YI LR L R G A GG+VSLLAYGI+IYAM+ APMGAVSALRET Sbjct: 180 WGILMPALYIALRDGKSLLRWRAGVGRAATGGVVSLLAYGIIIYAMAAAPMGAVSALRET 239 Query: 240 SVLFAALIGYFFLGETLTVRKMLACAVIAAGTIIIG 275 SVLFAAL+GY FLGETLT+ KMLAC VI +G +I+G Sbjct: 240 SVLFAALLGYLFLGETLTLGKMLACTVIVSGIVIMG 275