BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0181.p         (212 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_002872901.1| LysR family regulatory protein [Pseudomonas ...   215   4e-54
ref|ZP_06639720.1| glycine cleavage system transcriptional activ...   207   7e-52
ref|YP_001177011.1| LysR family transcriptional regulator [Enter...   202   2e-50
ref|YP_004215352.1| LysR family transcriptional regulator [Rahne...   195   3e-48
ref|YP_004353478.1| LysR family transcriptional regulator [Pseud...   191   5e-47

>ref|YP_002872901.1| LysR family regulatory protein [Pseudomonas fluorescens SBW25]
 emb|CAY49556.1| LysR family regulatory protein [Pseudomonas fluorescens SBW25]
          Length = 301

 Score =  215 bits (547), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 104/123 (84%), Positives = 111/123 (90%)

Query: 1   MNLEATLTDLREQKGRVRLKVSTTYSFALKWLLPRLPGLSRLHPEILVTLETTDKAIHFS 60
           MNLEATL+DLREQKGRVRLKVS TYSFALKWLLPRLP LS+ HPEIL+TLET+DKAI FS
Sbjct: 76  MNLEATLSDLREQKGRVRLKVSATYSFALKWLLPRLPSLSQQHPEILITLETSDKAITFS 135

Query: 61  STEPDVAIRFGNGNYPGLHSEFMFREQIFPVASPDLLARLGTPRKPAELLCYPLLTRAGA 120
           S + DVAIR GNGNYPGLHSEFM REQIFPVASPDLL R GTP++PAELL YPLLTR GA
Sbjct: 136 SADSDVAIRLGNGNYPGLHSEFMLREQIFPVASPDLLNRFGTPQEPAELLRYPLLTRDGA 195

Query: 121 DLV 123
           DLV
Sbjct: 196 DLV 198


>ref|ZP_06639720.1| glycine cleavage system transcriptional activator [Serratia
           odorifera DSM 4582]
 gb|EFE95365.1| glycine cleavage system transcriptional activator [Serratia
           odorifera DSM 4582]
          Length = 301

 Score =  207 bits (528), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 99/122 (81%), Positives = 111/122 (90%)

Query: 2   NLEATLTDLREQKGRVRLKVSTTYSFALKWLLPRLPGLSRLHPEILVTLETTDKAIHFSS 61
            LE TL DLREQKGRVRL+V+TTYSFALKWLLPRLP L+RLHPEILVTLE+TD+AI+F+S
Sbjct: 77  KLETTLADLREQKGRVRLRVNTTYSFALKWLLPRLPELARLHPEILVTLESTDQAINFAS 136

Query: 62  TEPDVAIRFGNGNYPGLHSEFMFREQIFPVASPDLLARLGTPRKPAELLCYPLLTRAGAD 121
           T+ DVAIRFG+GNYP LH+EFMFREQ+FPVASP LL R GTPR+PAELL YPLLTR GAD
Sbjct: 137 TDADVAIRFGHGNYPALHTEFMFREQLFPVASPALLQRFGTPREPAELLRYPLLTRDGAD 196

Query: 122 LV 123
           LV
Sbjct: 197 LV 198


>ref|YP_001177011.1| LysR family transcriptional regulator [Enterobacter sp. 638]
 gb|ABP60960.1| transcriptional regulator, LysR family [Enterobacter sp. 638]
          Length = 301

 Score =  202 bits (515), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 96/122 (78%), Positives = 108/122 (88%)

Query: 2   NLEATLTDLREQKGRVRLKVSTTYSFALKWLLPRLPGLSRLHPEILVTLETTDKAIHFSS 61
            LE +L DLREQK RVRL+VSTTYSFALKWLLPRLP L+RLHPEILVTLE+TD+AIHF++
Sbjct: 77  KLETSLADLREQKSRVRLRVSTTYSFALKWLLPRLPELTRLHPEILVTLESTDRAIHFTN 136

Query: 62  TEPDVAIRFGNGNYPGLHSEFMFREQIFPVASPDLLARLGTPRKPAELLCYPLLTRAGAD 121
           ++ +VAIRFG+GNYP LHSEFMFREQ+FPVASP LL R GTP  PAELL YPLLTR GAD
Sbjct: 137 SDSNVAIRFGHGNYPALHSEFMFREQLFPVASPALLQRFGTPHDPAELLRYPLLTRDGAD 196

Query: 122 LV 123
           LV
Sbjct: 197 LV 198


>ref|YP_004215352.1| LysR family transcriptional regulator [Rahnella sp. Y9602]
 gb|ADW76225.1| transcriptional regulator, LysR family [Rahnella sp. Y9602]
          Length = 301

 Score =  195 bits (496), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 94/122 (77%), Positives = 106/122 (86%)

Query: 2   NLEATLTDLREQKGRVRLKVSTTYSFALKWLLPRLPGLSRLHPEILVTLETTDKAIHFSS 61
            LE TL DLREQKGRVRL+VSTTYSFALKWLLPRLP L+RLHPEILV+LE+TDKAI+F+S
Sbjct: 77  KLETTLADLREQKGRVRLRVSTTYSFALKWLLPRLPELARLHPEILVSLESTDKAINFAS 136

Query: 62  TEPDVAIRFGNGNYPGLHSEFMFREQIFPVASPDLLARLGTPRKPAELLCYPLLTRAGAD 121
            + DVAIRFG+GNY  LH+EFMFREQ+FPVASP  LA  G P +PAELL +PLLTR GAD
Sbjct: 137 ADSDVAIRFGHGNYAALHTEFMFREQLFPVASPAFLAGFGIPAEPAELLRFPLLTRDGAD 196

Query: 122 LV 123
           LV
Sbjct: 197 LV 198


>ref|YP_004353478.1| LysR family transcriptional regulator [Pseudomonas brassicacearum
           subsp. brassicacearum NFM421]
 gb|AEA68474.1| putative transcription factor, LysR family [Pseudomonas
           brassicacearum subsp. brassicacearum NFM421]
          Length = 301

 Score =  191 bits (486), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 97/144 (67%), Positives = 114/144 (79%), Gaps = 2/144 (1%)

Query: 1   MNLEATLTDLREQKGRVRLKVSTTYSFALKWLLPRLPGLSRLHPEILVTLETTDKAIHFS 60
           M LEATL DLREQ GR RL VSTTYSFALKWLLPRLP L++ HPEIL+TL++TD AI+FS
Sbjct: 76  MKLEATLADLREQNGRQRLSVSTTYSFALKWLLPRLPDLAQAHPEILLTLDSTDSAINFS 135

Query: 61  STEPDVAIRFGNGNYPGLHSEFMFREQIFPVASPDLLARLGTPRKPAELLCYPLLTRAGA 120
           +T+PDVAIR G+G++P L SEF+FREQIFPVASP LLAR GTP+  AELL YPLLTR GA
Sbjct: 136 TTDPDVAIRLGSGHFPSLFSEFLFREQIFPVASPALLARFGTPQTAAELLRYPLLTRDGA 195

Query: 121 DLVRPPVVESYSAKLIGEMIVSNE 144
            LV  P  E + A++  E+    E
Sbjct: 196 ALV--PKWEQWFAQMGVEVTTLKE 217