BLASTP 2.2.21 [Jun-14-2009]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0013.0179.p         (198 letters)

Database: All non-redundant GenBank CDS
translations+PDB+SwissProt+PIR+PRF excluding environmental samples
from WGS projects 
           15,459,386 sequences; 5,307,515,862 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_003981312.1| NADP-dependent malic enzyme 3 [Achromobacter...   357   8e-97
gb|EFV84320.1| NADP-dependent malic enzyme [Achromobacter xyloso...   356   1e-96
ref|YP_787916.1| malic enzyme [Bordetella avium 197N] >gi|115424...   356   1e-96
ref|ZP_06689614.1| NADP-dependent malate dehydrogenase (oxaloace...   355   2e-96
ref|YP_004349027.1| Malate dehydrogenase [Burkholderia gladioli ...   353   6e-96

>ref|YP_003981312.1| NADP-dependent malic enzyme 3 [Achromobacter xylosoxidans A8]
 gb|ADP18597.1| NADP-dependent malic enzyme 3 [Achromobacter xylosoxidans A8]
          Length = 766

 Score =  357 bits (915), Expect = 8e-97,   Method: Compositional matrix adjust.
 Identities = 174/194 (89%), Positives = 183/194 (94%), Gaps = 1/194 (0%)

Query: 1   MNT-TDRQAALDYHEFPTPGKITVNASKPLVTQRDLTLAYTPGVAAACEEIVADPLNAFR 59
           MNT +DRQAALDYHEFPTPGKI+V ASKPLV QRDL LAY+PGVAAACEEIVADP N +R
Sbjct: 1   MNTQSDRQAALDYHEFPTPGKISVVASKPLVNQRDLALAYSPGVAAACEEIVADPANVYR 60

Query: 60  YTARGNLVGVITNGTAVLGLGNIGALASKPVMEGKAVLFKKFAGIDVFDIEINETDPDKL 119
           YT RGNLVGVITNGTAVLGLGNIGALASKPVMEGKAVLFKKFAG+DV+DIEINETDPDKL
Sbjct: 61  YTGRGNLVGVITNGTAVLGLGNIGALASKPVMEGKAVLFKKFAGLDVYDIEINETDPDKL 120

Query: 120 VTIIAGLEATFGGINLEDIKAPECFTVERQLRDRMKIPVFHDDQHGTAITVSAAFINGLK 179
           V IIAGLEATFGGINLEDIKAPECFTVER+LR+RMKIPVFHDDQHGTAITVSAAFINGLK
Sbjct: 121 VEIIAGLEATFGGINLEDIKAPECFTVERKLRERMKIPVFHDDQHGTAITVSAAFINGLK 180

Query: 180 VVKKDITEVKVVVS 193
           VV KDI +VKVV S
Sbjct: 181 VVGKDIKQVKVVTS 194


>gb|EFV84320.1| NADP-dependent malic enzyme [Achromobacter xylosoxidans C54]
          Length = 764

 Score =  356 bits (913), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 175/194 (90%), Positives = 183/194 (94%), Gaps = 1/194 (0%)

Query: 1   MNT-TDRQAALDYHEFPTPGKITVNASKPLVTQRDLTLAYTPGVAAACEEIVADPLNAFR 59
           MN+ +DRQAALDYHEFPTPGKI+V ASKPLV QRDL LAY+PGVAAACEEIVADP N FR
Sbjct: 1   MNSQSDRQAALDYHEFPTPGKISVVASKPLVNQRDLALAYSPGVAAACEEIVADPANVFR 60

Query: 60  YTARGNLVGVITNGTAVLGLGNIGALASKPVMEGKAVLFKKFAGIDVFDIEINETDPDKL 119
           YT RGNLVGVITNGTAVLGLGNIGALASKPVMEGKAVLFKKFAG+DVFDIEINETDPDKL
Sbjct: 61  YTGRGNLVGVITNGTAVLGLGNIGALASKPVMEGKAVLFKKFAGLDVFDIEINETDPDKL 120

Query: 120 VTIIAGLEATFGGINLEDIKAPECFTVERQLRDRMKIPVFHDDQHGTAITVSAAFINGLK 179
           V IIAGLEATFGGINLEDIKAPECFTVER+LR+RMKIPVFHDDQHGTAITVSAAFINGLK
Sbjct: 121 VEIIAGLEATFGGINLEDIKAPECFTVERKLRERMKIPVFHDDQHGTAITVSAAFINGLK 180

Query: 180 VVKKDITEVKVVVS 193
           VV KDI +VKVV S
Sbjct: 181 VVGKDIDKVKVVTS 194


>ref|YP_787916.1| malic enzyme [Bordetella avium 197N]
 emb|CAJ51032.1| NADP-dependent malic enzyme [Bordetella avium 197N]
          Length = 764

 Score =  356 bits (913), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 173/192 (90%), Positives = 179/192 (93%)

Query: 2   NTTDRQAALDYHEFPTPGKITVNASKPLVTQRDLTLAYTPGVAAACEEIVADPLNAFRYT 61
           N  DRQAALDYHEFPTPGKI V ASKPLVTQRDL LAY+PGVAAACEEIV DP NAFRYT
Sbjct: 4   NPNDRQAALDYHEFPTPGKIAVTASKPLVTQRDLALAYSPGVAAACEEIVDDPANAFRYT 63

Query: 62  ARGNLVGVITNGTAVLGLGNIGALASKPVMEGKAVLFKKFAGIDVFDIEINETDPDKLVT 121
            RGNLVGVI+NGTAVLGLGNIGALASKPVMEGKAVLFKKFAG+DVFDIEINETDPDKLV 
Sbjct: 64  GRGNLVGVISNGTAVLGLGNIGALASKPVMEGKAVLFKKFAGLDVFDIEINETDPDKLVE 123

Query: 122 IIAGLEATFGGINLEDIKAPECFTVERQLRDRMKIPVFHDDQHGTAITVSAAFINGLKVV 181
           IIAGLE TFGGINLEDIKAPECFTVER+LR+RMKIPVFHDDQHGTAITVSAAFINGLKVV
Sbjct: 124 IIAGLEPTFGGINLEDIKAPECFTVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKVV 183

Query: 182 KKDITEVKVVVS 193
            KDI +VKVV S
Sbjct: 184 GKDIKQVKVVTS 195


>ref|ZP_06689614.1| NADP-dependent malate dehydrogenase (oxaloacetate-decarboxylating)
           [Achromobacter piechaudii ATCC 43553]
 gb|EFF73505.1| NADP-dependent malate dehydrogenase (oxaloacetate-decarboxylating)
           [Achromobacter piechaudii ATCC 43553]
          Length = 766

 Score =  355 bits (912), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 175/194 (90%), Positives = 183/194 (94%), Gaps = 1/194 (0%)

Query: 1   MNT-TDRQAALDYHEFPTPGKITVNASKPLVTQRDLTLAYTPGVAAACEEIVADPLNAFR 59
           MN+ +DRQAALDYHEFPTPGKI+V ASKPLV QRDL LAY+PGVAAACEEIVADP N +R
Sbjct: 1   MNSPSDRQAALDYHEFPTPGKISVVASKPLVNQRDLALAYSPGVAAACEEIVADPSNVYR 60

Query: 60  YTARGNLVGVITNGTAVLGLGNIGALASKPVMEGKAVLFKKFAGIDVFDIEINETDPDKL 119
           YTARGNLVGVITNGTAVLGLGNIGALASKPVMEGKAVLFKKFAG+DVFDIEINETDPDKL
Sbjct: 61  YTARGNLVGVITNGTAVLGLGNIGALASKPVMEGKAVLFKKFAGLDVFDIEINETDPDKL 120

Query: 120 VTIIAGLEATFGGINLEDIKAPECFTVERQLRDRMKIPVFHDDQHGTAITVSAAFINGLK 179
           V IIAGLEATFGGINLEDIKAPECFTVER+LR+RMKIPVFHDDQHGTAITVSAAFINGLK
Sbjct: 121 VEIIAGLEATFGGINLEDIKAPECFTVERKLRERMKIPVFHDDQHGTAITVSAAFINGLK 180

Query: 180 VVKKDITEVKVVVS 193
           VV KDI  VKVV S
Sbjct: 181 VVGKDIKTVKVVTS 194


>ref|YP_004349027.1| Malate dehydrogenase [Burkholderia gladioli BSR3]
 gb|AEA63515.1| Malate dehydrogenase [Burkholderia gladioli BSR3]
          Length = 761

 Score =  353 bits (907), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 171/193 (88%), Positives = 180/193 (93%)

Query: 1   MNTTDRQAALDYHEFPTPGKITVNASKPLVTQRDLTLAYTPGVAAACEEIVADPLNAFRY 60
           MN TDRQAAL+YH+FPTPGKI+V ASKPLVTQRDL LAYTPGVA ACEEI ADP NAF Y
Sbjct: 1   MNKTDRQAALEYHQFPTPGKISVTASKPLVTQRDLALAYTPGVAVACEEIAADPANAFNY 60

Query: 61  TARGNLVGVITNGTAVLGLGNIGALASKPVMEGKAVLFKKFAGIDVFDIEINETDPDKLV 120
           T+RGNLVGVITNG+AVLGLGNIGALASKPVMEGKAVLFKKFAGIDVFDIEI E+DPDKLV
Sbjct: 61  TSRGNLVGVITNGSAVLGLGNIGALASKPVMEGKAVLFKKFAGIDVFDIEITESDPDKLV 120

Query: 121 TIIAGLEATFGGINLEDIKAPECFTVERQLRDRMKIPVFHDDQHGTAITVSAAFINGLKV 180
            IIA LEATFGGINLEDIKAPECFTVER+LR+RMKIPVFHDDQHGTAITVSAAFINGLKV
Sbjct: 121 DIIASLEATFGGINLEDIKAPECFTVERKLRERMKIPVFHDDQHGTAITVSAAFINGLKV 180

Query: 181 VKKDITEVKVVVS 193
           V KDI +VKVV S
Sbjct: 181 VGKDIKQVKVVTS 193